PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000056233	[[26191859, 26192688], [26217562, 26217742], [26223320, 26223404], [26224152, 26226745]]	[[26192118, 26192688], [26217562, 26217742], [26223320, 26223404], [26224152, 26225403]]
ENST00000607375	[[26217622, 26217742], [26223320, 26223494]]	[[26217622, 26217742], [26223320, 26223452]]
ENST00000606261	[[26223679, 26225937]]	None
NM_004289	[[26191846, 26192688], [26217562, 26217742], [26223320, 26223404], [26224152, 26226757]]	[[26192118, 26192688], [26217562, 26217742], [26223320, 26223404], [26224152, 26225403]]

Promoter

Chrom	Start	End	Description
chr7	26191809	26191890	CAGE_peak_1_at_NFE2L3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I026151	26151195	26160925	2.66	[{'connected_gene': 'NFE2L3', 'score': 550.77}, {'connected_gene': 'HNRNPA2B1', 'score': 13.65}, {'connected_gene': 'SNX10', 'score': 13.2}, {'connected_gene': 'CBX3', 'score': 11.88}, {'connected_gene': 'LOC105375304', 'score': 9.82}, {'connected_gene': 'ENSG00000273237', 'score': 9.11}]
chr7	GH07I026078	26078893	26079400	0.98	[{'connected_gene': 'NFE2L3', 'score': 11.3}, {'connected_gene': 'CBX3', 'score': 10.49}, {'connected_gene': 'HNRNPA2B1', 'score': 10.49}, {'connected_gene': 'LOC105375304', 'score': 9.62}, {'connected_gene': 'GC07P026071', 'score': 0.44}, {'connected_gene': 'LOC105375198', 'score': 0.34}, {'connected_gene': 'LOC105375199', 'score': 0.23}]
chr7	GH07I026081	26081091	26082869	0.72	[{'connected_gene': 'NFE2L3', 'score': 11.3}, {'connected_gene': 'CBX3', 'score': 10.49}, {'connected_gene': 'HNRNPA2B1', 'score': 10.49}, {'connected_gene': 'LOC105375304', 'score': 9.62}, {'connected_gene': 'GC07P026071', 'score': 0.39}, {'connected_gene': 'LOC105375198', 'score': 0.37}, {'connected_gene': 'LOC105375199', 'score': 0.25}]
chr7	GH07I026083	26083261	26083570	0.72	[{'connected_gene': 'NFE2L3', 'score': 11.31}, {'connected_gene': 'CBX3', 'score': 10.49}, {'connected_gene': 'HNRNPA2B1', 'score': 10.49}, {'connected_gene': 'LOC105375304', 'score': 9.62}, {'connected_gene': 'GC07P026071', 'score': 0.39}, {'connected_gene': 'LOC105375198', 'score': 0.37}, {'connected_gene': 'LOC105375199', 'score': 0.25}]
chr7	GH07I026086	26086744	26088915	0.31	[{'connected_gene': 'NFE2L3', 'score': 12.21}, {'connected_gene': 'CBX3', 'score': 11.41}, {'connected_gene': 'HNRNPA2B1', 'score': 11.41}, {'connected_gene': 'LOC105375198', 'score': 0.39}, {'connected_gene': 'GC07P026071', 'score': 0.37}, {'connected_gene': 'LOC105375199', 'score': 0.26}]
chr7	GH07I026096	26096770	26098267	0.97	[{'connected_gene': 'NFE2L3', 'score': 11.85}, {'connected_gene': 'CBX3', 'score': 11.41}, {'connected_gene': 'HNRNPA2B1', 'score': 11.41}, {'connected_gene': 'LOC105375198', 'score': 0.77}, {'connected_gene': 'GC07P026071', 'score': 0.31}, {'connected_gene': 'LOC105375199', 'score': 0.29}]
chr7	GH07I026090	26090601	26091471	0.91	[{'connected_gene': 'NFE2L3', 'score': 12.27}, {'connected_gene': 'CBX3', 'score': 11.41}, {'connected_gene': 'HNRNPA2B1', 'score': 11.41}, {'connected_gene': 'LOC105375198', 'score': 0.39}, {'connected_gene': 'GC07P026071', 'score': 0.37}, {'connected_gene': 'LOC105375199', 'score': 0.28}]
chr7	GH07I026180	26180641	26181400	1.52	[{'connected_gene': 'NFE2L3', 'score': 12.16}, {'connected_gene': 'CBX3', 'score': 1.51}, {'connected_gene': 'GC07M026184', 'score': 0.77}, {'connected_gene': 'GC07P026176', 'score': 0.77}]
chr7	GH07I026182	26182285	26183000	0.77	[{'connected_gene': 'NFE2L3', 'score': 12.14}, {'connected_gene': 'GC07M026184', 'score': 0.77}, {'connected_gene': 'GC07P026176', 'score': 0.44}]
chr7	GH07I025892	25892461	25896030	1.19	[{'connected_gene': 'MIR148A', 'score': 11.98}, {'connected_gene': 'NFE2L3', 'score': 10.74}, {'connected_gene': 'LOC100506236', 'score': 0.29}, {'connected_gene': 'LOC105375200', 'score': 0.25}]
chr7	GH07I026005	26005265	26008422	0.63	[{'connected_gene': 'MIR148A', 'score': 11.77}, {'connected_gene': 'CBX3', 'score': 9.57}, {'connected_gene': 'HNRNPA2B1', 'score': 9.57}, {'connected_gene': 'NFE2L3', 'score': 4.33}, {'connected_gene': 'PIR39133', 'score': 0.37}, {'connected_gene': 'GC07P025973', 'score': 0.29}, {'connected_gene': 'LOC105375199', 'score': 0.13}]
chr7	GH07I026089	26089133	26089996	0.84	[{'connected_gene': 'HNRNPA2B1', 'score': 12.56}, {'connected_gene': 'NFE2L3', 'score': 12.21}, {'connected_gene': 'SNX10', 'score': 11.81}, {'connected_gene': 'CBX3', 'score': 11.41}, {'connected_gene': 'LOC105375198', 'score': 0.39}, {'connected_gene': 'GC07P026071', 'score': 0.37}, {'connected_gene': 'LOC105375199', 'score': 0.26}]
chr7	GH07I026186	26186401	26189490	1.31	[{'connected_gene': 'HNRNPA2B1', 'score': 12.2}, {'connected_gene': 'HOXA3', 'score': 10.28}, {'connected_gene': 'ENSG00000273237', 'score': 5.38}, {'connected_gene': 'CBX3', 'score': 4.68}, {'connected_gene': 'GC07M026184', 'score': 0.77}, {'connected_gene': 'NFE2L3', 'score': 0.28}]
chr7	GH07I026166	26166179	26168297	0.89	[{'connected_gene': 'CBX3', 'score': 11.42}, {'connected_gene': 'HNRNPA2B1', 'score': 11.42}, {'connected_gene': 'ENSG00000273237', 'score': 8.57}, {'connected_gene': 'NFE2L3', 'score': 0.37}]
chr7	GH07I026185	26185421	26186000	0.88	[{'connected_gene': 'GC07M026184', 'score': 550.77}, {'connected_gene': 'NFE2L3', 'score': 11.97}, {'connected_gene': 'CBX3', 'score': 0.37}]
chr7	GH07I026187	26185181	26185330	0.59	[{'connected_gene': 'GC07M026184', 'score': 550.77}, {'connected_gene': 'NFE2L3', 'score': 11.88}, {'connected_gene': 'CBX3', 'score': 0.37}]
chr7	GH07I026183	26183718	26184630	0.68	[{'connected_gene': 'GC07M026184', 'score': 550.77}, {'connected_gene': 'NFE2L3', 'score': 12.14}, {'connected_gene': 'ENSG00000273237', 'score': 4.85}, {'connected_gene': 'GC07P026176', 'score': 0.44}]