PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371421	[[140500105, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509452], [140509525, 140509810]]	[[140500169, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509452], [140509525, 140509590]]
ENST00000491911	[[140505902, 140507458], [140507911, 140507962], [140508066, 140508666], [140508750, 140508927], [140509010, 140509811]]	None
ENST00000475658	[[140508616, 140508666], [140508750, 140508927], [140509010, 140509350], [140509525, 140509812]]	None
ENST00000483563	[[140500136, 140500287], [140507347, 140507458], [140507874, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508766]]	None
ENST00000431925	[[140500145, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508432, 140508528]]	[[140500169, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508432, 140508528]]
ENST00000461627	[[140500147, 140500287], [140507347, 140507962], [140508066, 140508193]]	[[140500169, 140500287], [140507347, 140507601]]
ENST00000419386	[[140500154, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508591, 140508666], [140508750, 140508927], [140509010, 140509137]]	[[140500169, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508591, 140508666], [140508750, 140508927], [140509010, 140509137]]
ENST00000466367	[[140500180, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508663]]	None
ENST00000471125	[[140500192, 140500287], [140507347, 140507458], [140508066, 140508221], [140508483, 140508666], [140508750, 140508818]]	None
ENST00000495220	[[140500192, 140500287], [140507347, 140507458], [140507864, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508855]]	None
ENST00000497877	[[140506903, 140507025], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509042]]	None
ENST00000468983	[[140507732, 140507962], [140508066, 140508222]]	None
NM_152285	[[140500091, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509452], [140509525, 140509812]]	[[140500169, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509452], [140509525, 140509590]]
NM_001317968	[[140500091, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509812]]	[[140500169, 140500287], [140507347, 140507458], [140507911, 140507962], [140508066, 140508221], [140508483, 140508666], [140508750, 140508927], [140509010, 140509544]]

Promoter

Chrom	Start	End	Description
chr9	140500087	140500123	CAGE_peak_2_at_ARRDC1_5end
chr9	140500126	140500149	CAGE_peak_1_at_ARRDC1_5end
chr9	140500175	140500192	CAGE_peak_4_at_ARRDC1_5end
chr9	140506839	140506847	CAGE_peak_9_at_ARRDC1_5end
chr9	140506865	140506902	CAGE_peak_5_at_ARRDC1_5end
chr9	140506925	140506963	CAGE_peak_3_at_ARRDC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I137686	137685629	137685878	0.49	[{'connected_gene': 'DPH7', 'score': 26.24}, {'connected_gene': 'EHMT1', 'score': 24.55}, {'connected_gene': 'EXD3', 'score': 22.7}, {'connected_gene': 'ANAPC2', 'score': 16.93}, {'connected_gene': 'MAN1B1', 'score': 13.58}, {'connected_gene': 'SNHG7', 'score': 12.78}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.57}, {'connected_gene': 'ARRDC1', 'score': 11.54}, {'connected_gene': 'ZMYND19', 'score': 11.18}, {'connected_gene': 'CCDC183-AS1', 'score': 9.78}, {'connected_gene': 'NOXA1', 'score': 9.55}, {'connected_gene': 'SETP5', 'score': 0.26}, {'connected_gene': 'GC09P137764', 'score': 0.18}, {'connected_gene': 'ENSG00000283411', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.12}]
chr9	GH09I137604	137604599	137609309	2.16	[{'connected_gene': 'ARRDC1', 'score': 550.77}, {'connected_gene': 'ENSG00000283411', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 16.59}, {'connected_gene': 'ZMYND19', 'score': 7.83}, {'connected_gene': 'MRPL41', 'score': 5.26}, {'connected_gene': 'ARRDC1-AS1', 'score': 0.39}, {'connected_gene': 'GC09M137538', 'score': 0.08}]
chr9	GH09I137605	137604429	137604578	0.58	[{'connected_gene': 'ARRDC1', 'score': 550.77}, {'connected_gene': 'ENSG00000283411', 'score': 550.77}, {'connected_gene': 'ZMYND19', 'score': 0.39}, {'connected_gene': 'GC09M137538', 'score': 0.08}]
chr9	GH09I137627	137627546	137631377	1.43	[{'connected_gene': 'EHMT1', 'score': 35.1}, {'connected_gene': 'ARRDC1', 'score': 12.36}, {'connected_gene': 'DPH7', 'score': 11.9}, {'connected_gene': 'ZMYND19', 'score': 11.64}, {'connected_gene': 'LOC651337', 'score': 4.55}, {'connected_gene': 'ANAPC2', 'score': 2.03}, {'connected_gene': 'NDOR1', 'score': 1.83}, {'connected_gene': 'ENSG00000274841', 'score': 0.44}, {'connected_gene': 'ENSG00000283411', 'score': 0.34}, {'connected_gene': 'GC09M137538', 'score': 0.09}]
chr9	GH09I137694	137694628	137695989	1.11	[{'connected_gene': 'EHMT1', 'score': 41.09}, {'connected_gene': 'ARRDC1', 'score': 16.89}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.83}, {'connected_gene': 'SETP5', 'score': 0.23}, {'connected_gene': 'GC09P137764', 'score': 0.2}, {'connected_gene': 'ENSG00000283411', 'score': 0.17}, {'connected_gene': 'GC09M137538', 'score': 0.13}]
chr9	GH09I137737	137737351	137739129	0.93	[{'connected_gene': 'EHMT1', 'score': 8.48}, {'connected_gene': 'ARRDC1', 'score': 6.04}, {'connected_gene': 'GC09P137764', 'score': 0.34}, {'connected_gene': 'GC09M137538', 'score': 0.18}, {'connected_gene': 'SETP5', 'score': 0.15}]
chr9	GH09I137685	137685189	137685338	0.7	[{'connected_gene': 'EHMT1', 'score': 11.57}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.57}, {'connected_gene': 'ARRDC1', 'score': 11.55}, {'connected_gene': 'ZMYND19', 'score': 11.18}, {'connected_gene': 'EXD3', 'score': 9.55}, {'connected_gene': 'NOXA1', 'score': 9.55}, {'connected_gene': 'SETP5', 'score': 0.26}, {'connected_gene': 'GC09P137764', 'score': 0.18}, {'connected_gene': 'ENSG00000283411', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.12}]
chr9	GH09I137687	137686189	137686296	0.31	[{'connected_gene': 'EHMT1', 'score': 11.57}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.57}, {'connected_gene': 'ARRDC1', 'score': 11.54}, {'connected_gene': 'ZMYND19', 'score': 11.18}, {'connected_gene': 'EXD3', 'score': 9.55}, {'connected_gene': 'NOXA1', 'score': 9.55}, {'connected_gene': 'SETP5', 'score': 0.26}, {'connected_gene': 'GC09P137764', 'score': 0.18}, {'connected_gene': 'ENSG00000283411', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.12}]
chr9	GH09I137725	137725962	137727013	0.31	[{'connected_gene': 'EHMT1', 'score': 11.18}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.18}, {'connected_gene': 'ARRDC1', 'score': 11.16}, {'connected_gene': 'LOC101928932', 'score': 4.22}, {'connected_gene': 'GC09P137764', 'score': 0.28}, {'connected_gene': 'SETP5', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.16}]
chr9	GH09I137698	137697178	137697515	0.43	[{'connected_gene': 'EHMT1', 'score': 11.83}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.83}, {'connected_gene': 'ARRDC1', 'score': 11.8}, {'connected_gene': 'SETP5', 'score': 0.22}, {'connected_gene': 'GC09P137764', 'score': 0.2}, {'connected_gene': 'ENSG00000283411', 'score': 0.16}, {'connected_gene': 'GC09M137538', 'score': 0.13}]
chr9	GH09I137756	137756446	137764461	1.48	[{'connected_gene': 'EHMT1', 'score': 17.86}, {'connected_gene': 'LOC651337', 'score': 9.07}, {'connected_gene': 'PNPLA7', 'score': 6.32}, {'connected_gene': 'ARRDC1', 'score': 6.18}, {'connected_gene': 'MRPL41', 'score': 4.29}, {'connected_gene': 'GC09P137764', 'score': 0.77}, {'connected_gene': 'GC09M137538', 'score': 0.22}, {'connected_gene': 'SETP5', 'score': 0.13}]
chr9	GH09I137592	137592300	137594296	1.24	[{'connected_gene': 'EHMT1', 'score': 18.6}, {'connected_gene': 'PNPLA7', 'score': 16.31}, {'connected_gene': 'GRIN1', 'score': 2.72}, {'connected_gene': 'RNF208', 'score': 1.81}, {'connected_gene': 'CACNA1B', 'score': 1.72}, {'connected_gene': 'TPRN', 'score': 1.33}, {'connected_gene': 'ZMYND19', 'score': 0.77}, {'connected_gene': 'ARRDC1', 'score': 0.39}, {'connected_gene': 'GC09M137538', 'score': 0.07}]
chr9	GH09I137610	137610296	137620832	2.48	[{'connected_gene': 'EHMT1', 'score': 611.95}, {'connected_gene': 'ANAPC2', 'score': 33.66}, {'connected_gene': 'DPH7', 'score': 30.34}, {'connected_gene': 'SNHG7', 'score': 26.75}, {'connected_gene': 'LOC651337', 'score': 18.35}, {'connected_gene': 'EXD3', 'score': 11.49}, {'connected_gene': 'MAN1B1', 'score': 10.37}, {'connected_gene': 'ZMYND19', 'score': 7.57}, {'connected_gene': 'ARRDC1-AS1', 'score': 0.77}, {'connected_gene': 'ARRDC1', 'score': 0.44}, {'connected_gene': 'ENSG00000283411', 'score': 0.44}, {'connected_gene': 'GC09M137538', 'score': 0.08}]
chr9	GH09I137678	137678234	137681918	1.12	[{'connected_gene': 'EHMT1', 'score': 42.52}, {'connected_gene': 'ZMYND19', 'score': 16.68}, {'connected_gene': 'ARRDC1-AS1', 'score': 12.09}, {'connected_gene': 'ARRDC1', 'score': 12.07}, {'connected_gene': 'EXD3', 'score': 9.56}, {'connected_gene': 'NOXA1', 'score': 9.56}, {'connected_gene': 'SETP5', 'score': 0.28}, {'connected_gene': 'ENSG00000283411', 'score': 0.19}, {'connected_gene': 'GC09P137764', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.12}]
chr9	GH09I137682	137682437	137683000	1.05	[{'connected_gene': 'PNPLA7', 'score': 14.64}, {'connected_gene': 'EHMT1', 'score': 11.58}, {'connected_gene': 'ARRDC1-AS1', 'score': 11.58}, {'connected_gene': 'ARRDC1', 'score': 11.55}, {'connected_gene': 'ZMYND19', 'score': 11.18}, {'connected_gene': 'EXD3', 'score': 9.56}, {'connected_gene': 'NOXA1', 'score': 9.56}, {'connected_gene': 'SETP5', 'score': 0.26}, {'connected_gene': 'ENSG00000283411', 'score': 0.18}, {'connected_gene': 'GC09P137764', 'score': 0.18}, {'connected_gene': 'GC09M137538', 'score': 0.12}]
chr9	GH09I137632	137632000	137633782	1.22	[{'connected_gene': 'ZMYND19', 'score': 18.89}, {'connected_gene': 'ARRDC1', 'score': 12.33}, {'connected_gene': 'DPH7', 'score': 11.9}, {'connected_gene': 'EHMT1', 'score': 4.73}, {'connected_gene': 'ENSG00000274841', 'score': 0.44}, {'connected_gene': 'ENSG00000283411', 'score': 0.31}, {'connected_gene': 'GC09M137538', 'score': 0.09}]
chr9	GH09I137638	137638681	137640199	0.77	[{'connected_gene': 'ENSG00000274841', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 60.66}, {'connected_gene': 'SNHG7', 'score': 12.69}, {'connected_gene': 'ARRDC1-AS1', 'score': 12.5}, {'connected_gene': 'ARRDC1', 'score': 12.46}, {'connected_gene': 'DPH7', 'score': 11.41}, {'connected_gene': 'ANAPC2', 'score': 10.03}, {'connected_gene': 'SETP5', 'score': 0.77}, {'connected_gene': 'ENSG00000283411', 'score': 0.29}, {'connected_gene': 'GC09M137538', 'score': 0.1}]