PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361717	[[113195697, 113199590], [113206795, 113207059]]	[[113199017, 113199572]]
ENST00000500655	[[113198914, 113199590], [113202836, 113202929]]	[[113199017, 113199572]]
NM_052864	[[113196781, 113199590], [113206795, 113207059]]	[[113199017, 113199572]]

Promoter

Chrom	Start	End	Description
chr4	113206913	113206931	CAGE_peak_3_at_TIFA_5end
chr4	113207001	113207043	CAGE_peak_2_at_TIFA_5end
chr4	113207048	113207076	CAGE_peak_1_at_TIFA_5end
chr4	113207277	113207292	CAGE_peak_10_at_TIFA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I112282	112282560	112290146	2.5	[{'connected_gene': 'TIFA', 'score': 576.63}, {'connected_gene': 'ALPK1', 'score': 552.4}, {'connected_gene': 'FAM241A', 'score': 14.45}, {'connected_gene': 'AP1AR', 'score': 14.02}, {'connected_gene': 'LOC109864269', 'score': 13.4}, {'connected_gene': 'ENSG00000250966', 'score': 11.17}, {'connected_gene': 'RTEL1P1', 'score': 5.38}, {'connected_gene': 'LARP7', 'score': 2.98}, {'connected_gene': 'ZGRF1', 'score': 1.4}, {'connected_gene': 'GC04P112321', 'score': 0.28}]
chr4	GH04I112302	112301222	112301750	0.4	[{'connected_gene': 'TIFA', 'score': 0.37}, {'connected_gene': 'ALPK1', 'score': 0.37}, {'connected_gene': 'GC04P112321', 'score': 0.34}]
chr4	GH04I112311	112311929	112313782	1.44	[{'connected_gene': 'TIFA', 'score': 12.72}, {'connected_gene': 'AP1AR', 'score': 6.38}, {'connected_gene': 'ALPK1', 'score': 4.04}, {'connected_gene': 'LARP7', 'score': 2.31}, {'connected_gene': 'GC04P112321', 'score': 0.44}]
chr4	GH04I112279	112279111	112280600	1.46	[{'connected_gene': 'TIFA', 'score': 20.7}, {'connected_gene': 'FAM241A', 'score': 10.52}, {'connected_gene': 'ENSG00000272567', 'score': 0.44}, {'connected_gene': 'ALPK1', 'score': 0.44}]
chr4	GH04I112276	112276642	112278687	0.77	[{'connected_gene': 'TIFA', 'score': 20.0}, {'connected_gene': 'FAM241A', 'score': 10.52}, {'connected_gene': 'ENSG00000272567', 'score': 0.77}, {'connected_gene': 'ALPK1', 'score': 0.44}]
chr4	GH04I112259	112259862	112260150	0.22	[{'connected_gene': 'TIFA', 'score': 17.58}, {'connected_gene': 'FAM241A', 'score': 10.56}, {'connected_gene': 'LOC105377372', 'score': 9.89}, {'connected_gene': 'NEUROG2', 'score': 9.89}, {'connected_gene': 'ZGRF1', 'score': 5.02}, {'connected_gene': 'AP1AR', 'score': 4.71}, {'connected_gene': 'ENSG00000272567', 'score': 0.39}]
chr4	GH04I111678	111678159	111679692	0.31	[{'connected_gene': 'TIFA', 'score': 4.84}, {'connected_gene': 'GC04M111667', 'score': 0.44}, {'connected_gene': 'GC04M111676', 'score': 0.39}]
chr4	GH04I112296	112296524	112298672	2.08	[{'connected_gene': 'ALPK1', 'score': 550.39}, {'connected_gene': 'TIFA', 'score': 0.39}, {'connected_gene': 'GC04P112321', 'score': 0.34}]
chr4	GH04I112230	112230178	112233893	2.29	[{'connected_gene': 'AP1AR', 'score': 550.77}, {'connected_gene': 'ENSG00000260526', 'score': 550.77}, {'connected_gene': 'TIFA', 'score': 17.09}, {'connected_gene': 'LOC109864269', 'score': 13.39}, {'connected_gene': 'ZGRF1', 'score': 11.59}, {'connected_gene': 'LARP7', 'score': 11.08}, {'connected_gene': 'ENSG00000272567', 'score': 0.26}]
chr4	GH04I112082	112082416	112085863	1.27	[{'connected_gene': 'FAM241A', 'score': 16.69}, {'connected_gene': 'TIFA', 'score': 2.01}, {'connected_gene': 'TUBB8P3', 'score': 0.44}, {'connected_gene': 'RPS12P8', 'score': 0.29}]
chr4	GH04I112213	112213708	112215000	0.84	[{'connected_gene': 'FAM241A', 'score': 19.03}, {'connected_gene': 'TIFA', 'score': 4.47}, {'connected_gene': 'ENSG00000260526', 'score': 0.37}, {'connected_gene': 'GC04P112172', 'score': 0.26}]
chr4	GH04I111990	111990991	111992517	1.22	[{'connected_gene': 'FAM241A', 'score': 14.58}, {'connected_gene': 'AP1AR', 'score': 2.61}, {'connected_gene': 'TIFA', 'score': 1.61}, {'connected_gene': 'PIR60785', 'score': 0.39}, {'connected_gene': 'ENSG00000249815', 'score': 0.18}, {'connected_gene': 'LOC105377369', 'score': 0.11}]
chr4	GH04I112144	112144807	112148138	2.19	[{'connected_gene': 'FAM241A', 'score': 578.8}, {'connected_gene': 'ZGRF1', 'score': 5.53}, {'connected_gene': 'TIFA', 'score': 4.23}, {'connected_gene': 'LARP7', 'score': 3.26}, {'connected_gene': 'AP1AR', 'score': 3.23}, {'connected_gene': 'RPL36AP19', 'score': 0.34}]
chr4	GH04I112315	112315401	112317000	0.2	[{'connected_gene': 'LOC105377372', 'score': 11.49}, {'connected_gene': 'NEUROG2', 'score': 11.49}, {'connected_gene': 'GC04P112321', 'score': 0.44}, {'connected_gene': 'TIFA', 'score': 0.29}, {'connected_gene': 'ALPK1', 'score': 0.29}]
chr4	GH04I112317	112317760	112319787	0.71	[{'connected_gene': 'LOC105377372', 'score': 11.49}, {'connected_gene': 'NEUROG2', 'score': 11.49}, {'connected_gene': 'GC04P112321', 'score': 0.77}, {'connected_gene': 'TIFA', 'score': 0.29}, {'connected_gene': 'ALPK1', 'score': 0.29}]
chr4	GH04I112301	112301881	112303425	0.86	[{'connected_gene': 'GC04P112321', 'score': 0.37}, {'connected_gene': 'TIFA', 'score': 0.37}, {'connected_gene': 'ALPK1', 'score': 0.37}]
chr4	GH04I112309	112309075	112309850	0.77	[{'connected_gene': 'GC04P112321', 'score': 0.39}, {'connected_gene': 'TIFA', 'score': 0.34}, {'connected_gene': 'ALPK1', 'score': 0.34}]
chr4	GH04I112272	112272865	112274442	0.89	[{'connected_gene': 'ENSG00000272567', 'score': 550.77}, {'connected_gene': 'TIFA', 'score': 18.9}, {'connected_gene': 'FAM241A', 'score': 10.41}, {'connected_gene': 'ALPK1', 'score': 0.39}]
chr4	GH04I112168	112168865	112171695	1.12	[{'connected_gene': 'GC04P112172', 'score': 550.77}, {'connected_gene': 'RPL36AP19', 'score': 550.77}, {'connected_gene': 'FAM241A', 'score': 26.62}, {'connected_gene': 'TIFA', 'score': 4.15}]