PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000456996	[[87011728, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87018218], [87028633, 87028780], [87034569, 87034905], [87035241, 87035519]]	[[87013042, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
ENST00000409511	[[87011733, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018218], [87028633, 87028780], [87034569, 87034905], [87035241, 87035519]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
ENST00000352580	[[87011732, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87018018]]	[[87013042, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
ENST00000283635	[[87011732, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018803]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
ENST00000538832	[[87012961, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018218], [87018632, 87018803]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018071]]
ENST00000409781	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87017450, 87017804], [87017899, 87017948]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87017450, 87017804], [87017899, 87017948]]
NM_001145873	[[87011727, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018218], [87028633, 87028780], [87034569, 87034905], [87035241, 87035519]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
NM_001768	[[87011727, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018837]]	[[87013042, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
NM_171827	[[87011727, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87018837]]	[[87013042, 87013094], [87015652, 87015683], [87016762, 87016873], [87017450, 87017804], [87017899, 87017948]]
NR_027353	[[87011727, 87013094], [87015652, 87015683], [87016445, 87016556], [87016762, 87016873], [87017450, 87017804], [87017899, 87018218], [87018632, 87018837]]	None

Promoter

Chrom	Start	End	Description
chr2	87017971	87017982	CAGE_peak_4_at_CD8A_5end
chr2	87017985	87018050	CAGE_peak_1_at_CD8A_5end
chr2	87018060	87018074	CAGE_peak_2_at_CD8A_5end
chr2	87018281	87018294	CAGE_peak_5_at_CD8A_5end
chr2	87018380	87018390	CAGE_peak_6_at_CD8A_5end
chr2	87018470	87018477	CAGE_peak_7_at_CD8A_5end
chr2	87018784	87018809	CAGE_peak_3_at_CD8A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I086828	86828443	86829123	0.2	[{'connected_gene': 'CD8B', 'score': 5.11}, {'connected_gene': 'CD8A', 'score': 0.34}, {'connected_gene': 'ANAPC1P1', 'score': 0.29}]
chr2	GH02I086829	86829266	86830089	0.31	[{'connected_gene': 'CD8B', 'score': 5.11}, {'connected_gene': 'PLGLB1', 'score': 4.98}, {'connected_gene': 'CD8A', 'score': 4.79}, {'connected_gene': 'ENSG00000231259', 'score': 4.14}, {'connected_gene': 'ANAPC1P1', 'score': 0.29}]
chr2	GH02I086854	86854015	86854922	0.2	[{'connected_gene': 'CD8B', 'score': 0.44}, {'connected_gene': 'ANAPC1P1', 'score': 0.44}, {'connected_gene': 'CD8A', 'score': 0.25}]
chr2	GH02I086844	86844715	86845455	0.2	[{'connected_gene': 'CD8B', 'score': 0.37}, {'connected_gene': 'ANAPC1P1', 'score': 0.37}, {'connected_gene': 'CD8A', 'score': 0.28}]
chr2	GH02I086848	86848881	86849867	0.2	[{'connected_gene': 'CD8B', 'score': 0.39}, {'connected_gene': 'ANAPC1P1', 'score': 0.39}, {'connected_gene': 'CD8A', 'score': 0.26}]
chr2	GH02I086842	86842378	86843109	0.4	[{'connected_gene': 'CD8B', 'score': 0.37}, {'connected_gene': 'ANAPC1P1', 'score': 0.37}, {'connected_gene': 'CD8A', 'score': 0.29}]
chr2	GH02I086856	86856001	86856400	0.69	[{'connected_gene': 'CD8B', 'score': 0.44}, {'connected_gene': 'ANAPC1P1', 'score': 0.44}, {'connected_gene': 'CD8A', 'score': 0.25}]
chr2	GH02I086805	86805212	86810495	2.51	[{'connected_gene': 'CD8A', 'score': 584.78}, {'connected_gene': 'CD8B', 'score': 18.85}, {'connected_gene': 'SNORD94', 'score': 9.83}, {'connected_gene': 'CHMP3', 'score': 9.68}, {'connected_gene': 'RNU6-640P', 'score': 9.68}, {'connected_gene': 'REEP1', 'score': 5.72}, {'connected_gene': 'PLGLB1', 'score': 4.07}, {'connected_gene': 'LOC105374846', 'score': 0.39}]
chr2	GH02I086783	86783119	86795755	1.98	[{'connected_gene': 'CD8A', 'score': 591.87}, {'connected_gene': 'CD8B', 'score': 21.15}, {'connected_gene': 'CHMP3', 'score': 20.0}, {'connected_gene': 'RNU6-640P', 'score': 10.07}, {'connected_gene': 'REEP1', 'score': 6.93}, {'connected_gene': 'ENSG00000231259', 'score': 6.74}, {'connected_gene': 'RMND5A', 'score': 4.65}, {'connected_gene': 'KDM3A', 'score': 2.11}, {'connected_gene': 'RNF103', 'score': 1.51}, {'connected_gene': 'LOC105374846', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.23}]
chr2	GH02I086648	86648656	86650165	0.79	[{'connected_gene': 'CD8A', 'score': 4.48}, {'connected_gene': 'RNF103', 'score': 0.31}, {'connected_gene': 'GC02P086686', 'score': 0.28}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.19}]
chr2	GH02I086769	86769130	86772348	0.31	[{'connected_gene': 'CD8A', 'score': 7.3}, {'connected_gene': 'RMND5A', 'score': 6.5}, {'connected_gene': 'ENSG00000231259', 'score': 5.63}, {'connected_gene': 'PLGLB1', 'score': 5.39}, {'connected_gene': 'CHMP3', 'score': 4.18}, {'connected_gene': 'LOC105374846', 'score': 0.34}, {'connected_gene': 'GC02M086689', 'score': 0.28}]
chr2	GH02I086772	86772365	86776328	0.2	[{'connected_gene': 'CD8A', 'score': 7.56}, {'connected_gene': 'RMND5A', 'score': 6.5}, {'connected_gene': 'LOC105374846', 'score': 0.34}, {'connected_gene': 'GC02M086689', 'score': 0.28}]
chr2	GH02I086741	86741368	86743305	0.31	[{'connected_gene': 'CD8A', 'score': 7.76}, {'connected_gene': 'GC02M086689', 'score': 0.44}, {'connected_gene': 'RMND5A', 'score': 0.34}, {'connected_gene': 'LOC105374846', 'score': 0.23}]
chr2	GH02I086776	86776341	86778386	0.2	[{'connected_gene': 'CD8A', 'score': 12.13}, {'connected_gene': 'CHMP3', 'score': 9.95}, {'connected_gene': 'RNU6-640P', 'score': 9.94}, {'connected_gene': 'ENSG00000202537', 'score': 9.45}, {'connected_gene': 'RMND5A', 'score': 7.39}, {'connected_gene': 'LOC105374846', 'score': 0.37}, {'connected_gene': 'GC02M086689', 'score': 0.26}]
chr2	GH02I086821	86821394	86822255	0.4	[{'connected_gene': 'CD8A', 'score': 4.4}, {'connected_gene': 'LOC105374846', 'score': 0.31}, {'connected_gene': 'CD8B', 'score': 0.26}, {'connected_gene': 'ANAPC1P1', 'score': 0.26}]
chr2	GH02I086814	86814621	86816692	0.4	[{'connected_gene': 'CD8A', 'score': 0.44}, {'connected_gene': 'LOC105374846', 'score': 0.34}, {'connected_gene': 'CD8B', 'score': 0.25}, {'connected_gene': 'ANAPC1P1', 'score': 0.25}]
chr2	GH02I086819	86819826	86820368	0.4	[{'connected_gene': 'CD8A', 'score': 6.01}, {'connected_gene': 'LOC105374846', 'score': 0.34}, {'connected_gene': 'CD8B', 'score': 0.26}, {'connected_gene': 'ANAPC1P1', 'score': 0.26}]
chr2	GH02I086818	86818857	86819203	0.2	[{'connected_gene': 'CD8A', 'score': 0.39}, {'connected_gene': 'LOC105374846', 'score': 0.34}, {'connected_gene': 'CD8B', 'score': 0.26}, {'connected_gene': 'ANAPC1P1', 'score': 0.26}]
chr2	GH02I086811	86811068	86814574	0.31	[{'connected_gene': 'CD8A', 'score': 5.55}, {'connected_gene': 'LOC105374846', 'score': 0.37}, {'connected_gene': 'ANAPC1P1', 'score': 0.25}]
chr2	GH02I086728	86728814	86730101	0.2	[{'connected_gene': 'CD8A', 'score': 6.68}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.44}, {'connected_gene': 'RMND5A', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.44}]
chr2	GH02I086187	86187478	86187624	0.51	[{'connected_gene': 'SNORD94', 'score': 11.2}, {'connected_gene': 'KDM3A', 'score': 9.81}, {'connected_gene': 'CD8A', 'score': 4.26}, {'connected_gene': 'IMMT', 'score': 0.44}, {'connected_gene': 'MIR4779', 'score': 0.44}, {'connected_gene': 'ENSG00000200241', 'score': 0.31}, {'connected_gene': 'GC02M086160', 'score': 0.31}, {'connected_gene': 'GC02M086172', 'score': 0.28}]
chr2	GH02I086694	86694668	86696122	1.61	[{'connected_gene': 'SNORD94', 'score': 41.53}, {'connected_gene': 'LOC102724642', 'score': 34.49}, {'connected_gene': 'RNF103-CHMP3', 'score': 10.88}, {'connected_gene': 'RNF103', 'score': 10.76}, {'connected_gene': 'POLR1A', 'score': 10.21}, {'connected_gene': 'CHMP3', 'score': 9.95}, {'connected_gene': 'RNU6-640P', 'score': 9.92}, {'connected_gene': 'RMND5A', 'score': 6.78}, {'connected_gene': 'CD8A', 'score': 5.64}, {'connected_gene': 'ENSG00000231259', 'score': 5.56}, {'connected_gene': 'GC02P086686', 'score': 0.44}, {'connected_gene': 'GC02M086689', 'score': 0.26}]
chr2	GH02I086719	86719400	86721875	2.14	[{'connected_gene': 'RMND5A', 'score': 555.44}, {'connected_gene': 'RNF103-CHMP3', 'score': 550.77}, {'connected_gene': 'CD8A', 'score': 5.49}, {'connected_gene': 'ENSG00000231259', 'score': 5.3}, {'connected_gene': 'GC02M086689', 'score': 0.37}]
chr2	GH02I086835	86835756	86838649	0.96	[{'connected_gene': 'PLGLB1', 'score': 7.17}, {'connected_gene': 'LOC730268', 'score': 5.13}, {'connected_gene': 'CD8B', 'score': 0.34}, {'connected_gene': 'ANAPC1P1', 'score': 0.34}, {'connected_gene': 'CD8A', 'score': 0.31}]
chr2	GH02I086824	86824001	86828199	0.71	[{'connected_gene': 'CHMP3', 'score': 8.47}, {'connected_gene': 'ENSG00000231259', 'score': 8.22}, {'connected_gene': 'CD8B', 'score': 5.08}, {'connected_gene': 'CD8A', 'score': 0.37}, {'connected_gene': 'ANAPC1P1', 'score': 0.28}]
chr2	GH02I086462	86462927	86465856	0.31	[{'connected_gene': 'CHMP3', 'score': 22.71}, {'connected_gene': 'RNF103', 'score': 14.59}, {'connected_gene': 'RNU6-640P', 'score': 11.75}, {'connected_gene': 'KDM3A', 'score': 11.4}, {'connected_gene': 'RNF103-CHMP3', 'score': 10.24}, {'connected_gene': 'CD8A', 'score': 4.06}, {'connected_gene': 'GC02M086424', 'score': 0.77}, {'connected_gene': 'GC02M086437', 'score': 0.34}, {'connected_gene': 'GC02P086423', 'score': 0.26}]
chr2	GH02I086764	86764669	86765487	0.82	[{'connected_gene': 'CHMP3', 'score': 10.75}, {'connected_gene': 'RNU6-640P', 'score': 10.73}, {'connected_gene': 'CD8A', 'score': 7.69}, {'connected_gene': 'GC02M086689', 'score': 0.31}, {'connected_gene': 'LOC105374846', 'score': 0.29}, {'connected_gene': 'RMND5A', 'score': 0.26}]
chr2	GH02I086747	86747437	86748912	0.68	[{'connected_gene': 'RNF103-CHMP3', 'score': 11.92}, {'connected_gene': 'RNF103', 'score': 11.74}, {'connected_gene': 'CHMP3', 'score': 11.06}, {'connected_gene': 'RNU6-640P', 'score': 11.04}, {'connected_gene': 'CD8A', 'score': 7.03}, {'connected_gene': 'RMND5A', 'score': 5.96}, {'connected_gene': 'IMMT', 'score': 4.68}, {'connected_gene': 'GC02M086689', 'score': 0.39}, {'connected_gene': 'LOC105374846', 'score': 0.25}]
chr2	GH02I086831	86831191	86833508	0.31	[{'connected_gene': 'ENSG00000231259', 'score': 8.76}, {'connected_gene': 'CD8B', 'score': 5.14}, {'connected_gene': 'CD8A', 'score': 0.34}, {'connected_gene': 'ANAPC1P1', 'score': 0.31}]
chr2	GH02I086857	86857622	86860109	0.2	[{'connected_gene': 'ENSG00000231259', 'score': 23.45}, {'connected_gene': 'CD8B', 'score': 0.77}, {'connected_gene': 'ANAPC1P1', 'score': 0.77}, {'connected_gene': 'CD8A', 'score': 0.23}]
chr2	GH02I086845	86845743	86846870	0.2	[{'connected_gene': 'ENSG00000231259', 'score': 15.59}, {'connected_gene': 'CD8B', 'score': 0.37}, {'connected_gene': 'ANAPC1P1', 'score': 0.37}, {'connected_gene': 'CD8A', 'score': 0.28}]
chr2	GH02I086734	86734401	86735800	0.4	[{'connected_gene': 'GC02M086689', 'score': 550.77}, {'connected_gene': 'CD8A', 'score': 6.14}, {'connected_gene': 'RNF103-CHMP3', 'score': 0.39}, {'connected_gene': 'RMND5A', 'score': 0.39}]
chr2	GH02I086849	86849876	86853252	0.31	[{'connected_gene': 'ENSG00000231259', 'score': 19.13}, {'connected_gene': 'PLGLB1', 'score': 9.98}, {'connected_gene': 'CD8B', 'score': 0.39}, {'connected_gene': 'ANAPC1P1', 'score': 0.39}, {'connected_gene': 'CD8A', 'score': 0.26}]
chr2	GH02I086847	86847225	86848876	0.2	[{'connected_gene': 'ENSG00000231259', 'score': 20.41}, {'connected_gene': 'CHMP3', 'score': 5.94}, {'connected_gene': 'CD8B', 'score': 0.39}, {'connected_gene': 'ANAPC1P1', 'score': 0.39}, {'connected_gene': 'CD8A', 'score': 0.28}]