PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297265	[[82644668, 82645051], [82665298, 82665476], [82667604, 82667719], [82670376, 82670530], [82670714, 82671750]]	[[82644861, 82645051], [82665298, 82665476], [82667604, 82667719], [82670376, 82670530], [82670714, 82670779]]
NM_152284	[[82644687, 82645051], [82665298, 82665476], [82667604, 82667719], [82670376, 82670530], [82670714, 82671750]]	[[82644861, 82645051], [82665298, 82665476], [82667604, 82667719], [82670376, 82670530], [82670714, 82670779]]

Promoter

Chrom	Start	End	Description
chr8	82644557	82644597	CAGE_peak_3_at_CHMP4C_5end
chr8	82644669	82644738	CAGE_peak_1_at_CHMP4C_5end
chr8	82644741	82644791	CAGE_peak_2_at_CHMP4C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I081730	81730627	81734455	2.2	[{'connected_gene': 'CHMP4C', 'score': 557.35}, {'connected_gene': 'ZFAND1', 'score': 550.77}, {'connected_gene': 'IMPA1', 'score': 25.19}, {'connected_gene': 'FABP5', 'score': 4.3}]
chr8	GH08I081745	81745266	81745415	0.43	[{'connected_gene': 'CHMP4C', 'score': 0.39}, {'connected_gene': 'ZFAND1', 'score': 0.39}, {'connected_gene': 'ENSG00000253334', 'score': 0.25}]
chr8	GH08I081780	81780801	81781000	0.72	[{'connected_gene': 'CHMP4C', 'score': 16.05}, {'connected_gene': 'SNX16', 'score': 11.66}, {'connected_gene': 'ZFAND1', 'score': 11.26}, {'connected_gene': 'ENSG00000253334', 'score': 0.39}]
chr8	GH08I081746	81745481	81746434	0.46	[{'connected_gene': 'CHMP4C', 'score': 47.52}, {'connected_gene': 'SNX16', 'score': 6.12}, {'connected_gene': 'ZFAND1', 'score': 0.39}, {'connected_gene': 'ENSG00000253334', 'score': 0.25}]
chr8	GH08I080809	80809888	80811000	0.85	[{'connected_gene': 'CHMP4C', 'score': 12.36}, {'connected_gene': 'ENSG00000272518', 'score': 11.5}, {'connected_gene': 'RNU11-6P', 'score': 10.35}, {'connected_gene': 'HMGB1P41', 'score': 0.77}, {'connected_gene': 'GC08M080788', 'score': 0.34}, {'connected_gene': 'ZNF704', 'score': 0.21}]
chr8	GH08I081719	81719914	81722364	1.99	[{'connected_gene': 'ZFAND1', 'score': 550.39}, {'connected_gene': 'IMPA1', 'score': 25.3}, {'connected_gene': 'CHMP4C', 'score': 8.7}, {'connected_gene': 'ENSG00000280193', 'score': 0.34}]
chr8	GH08I081630	81630170	81635456	1.37	[{'connected_gene': 'IMPA1P1', 'score': 550.77}, {'connected_gene': 'IMPA1', 'score': 14.05}, {'connected_gene': 'ZFAND1', 'score': 9.51}, {'connected_gene': 'CHMP4C', 'score': 4.98}, {'connected_gene': 'SLC10A5P1', 'score': 0.77}]
chr8	GH08I081781	81780586	81780755	0.74	[{'connected_gene': 'SNX16', 'score': 19.85}, {'connected_gene': 'CHMP4C', 'score': 16.05}, {'connected_gene': 'ZFAND1', 'score': 11.26}, {'connected_gene': 'ENSG00000253334', 'score': 0.39}]
chr8	GH08I081783	81783262	81784489	0.63	[{'connected_gene': 'SNX16', 'score': 22.86}, {'connected_gene': 'CHMP4C', 'score': 6.82}, {'connected_gene': 'FABP5', 'score': 5.23}, {'connected_gene': 'ENSG00000253334', 'score': 0.44}, {'connected_gene': 'ZFAND1', 'score': 0.23}]
chr8	GH08I081768	81768201	81768600	0.69	[{'connected_gene': 'SNX16', 'score': 14.61}, {'connected_gene': 'IMPA1', 'score': 6.91}, {'connected_gene': 'CHMP4C', 'score': 5.07}, {'connected_gene': 'ENSG00000253334', 'score': 0.34}, {'connected_gene': 'ZFAND1', 'score': 0.28}]
chr8	GH08I081840	81840882	81843335	2.04	[{'connected_gene': 'SNX16', 'score': 611.42}, {'connected_gene': 'LOC105375928', 'score': 550.77}, {'connected_gene': 'ZFAND1', 'score': 23.36}, {'connected_gene': 'HNRNPA1P36', 'score': 21.58}, {'connected_gene': 'LINC02235', 'score': 8.51}, {'connected_gene': 'CHMP4C', 'score': 6.95}]
chr8	GH08I081421	81421583	81423440	0.31	[{'connected_gene': 'PMP2', 'score': 19.52}, {'connected_gene': 'FABP4', 'score': 5.01}, {'connected_gene': 'CHMP4C', 'score': 4.5}, {'connected_gene': 'ENSG00000253859', 'score': 0.37}, {'connected_gene': 'LOC105375926', 'score': 0.2}]
chr8	GH08I081643	81643638	81644492	0.56	[{'connected_gene': 'IMPA1', 'score': 20.79}, {'connected_gene': 'CHMP4C', 'score': 10.97}, {'connected_gene': 'ZFAND1', 'score': 10.97}, {'connected_gene': 'SLC10A5P1', 'score': 0.44}, {'connected_gene': 'GC08P081673', 'score': 0.31}]
chr8	GH08I081708	81708686	81708835	0.49	[{'connected_gene': 'IMPA1', 'score': 12.01}, {'connected_gene': 'ENSG00000280193', 'score': 0.39}, {'connected_gene': 'CHMP4C', 'score': 0.34}, {'connected_gene': 'ZFAND1', 'score': 0.34}]
chr8	GH08I081661	81661963	81664669	0.38	[{'connected_gene': 'IMPA1', 'score': 59.51}, {'connected_gene': 'CHMP4C', 'score': 15.32}, {'connected_gene': 'GC08P081673', 'score': 0.39}, {'connected_gene': 'SLC10A5P1', 'score': 0.31}]
chr8	GH08I081685	81685601	81686935	2.01	[{'connected_gene': 'IMPA1', 'score': 582.32}, {'connected_gene': 'CHMP4C', 'score': 5.84}, {'connected_gene': 'GC08P081673', 'score': 0.39}]
chr8	GH08I081692	81692851	81695958	1.22	[{'connected_gene': 'ENSG00000280193', 'score': 550.77}, {'connected_gene': 'SLC10A5', 'score': 550.77}, {'connected_gene': 'IMPA1', 'score': 25.85}, {'connected_gene': 'CHMP4C', 'score': 21.07}, {'connected_gene': 'ZFAND1', 'score': 19.21}]