PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000253023	[[59067078, 59067596], [59067682, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068524], [59069639, 59070327]]	[[59067455, 59067596], [59067682, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068524], [59069639, 59069748]]
ENST00000595957	[[59067507, 59067596], [59067682, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068524], [59069639, 59069721], [59070060, 59070321]]	[[59067507, 59067596], [59067682, 59067746], [59068053, 59068109]]
ENST00000596985	[[59067567, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068456]]	[[59067571, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068456]]
ENST00000599829	[[59067948, 59068157], [59068258, 59068496]]	None
ENST00000593801	[[59067960, 59068157], [59068258, 59068297], [59068429, 59068516]]	None
NM_003969	[[59067078, 59067596], [59067682, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068524], [59069639, 59070343]]	[[59067455, 59067596], [59067682, 59067746], [59068053, 59068157], [59068258, 59068297], [59068429, 59068524], [59069639, 59069748]]

Promoter

Chrom	Start	End	Description
chr19	59069872	59069904	CAGE_peak_3_at_UBE2M_5end
chr19	59069928	59069993	CAGE_peak_2_at_UBE2M_5end
chr19	59070133	59070155	CAGE_peak_6_at_UBE2M_5end
chr19	59070206	59070223	CAGE_peak_4_at_UBE2M_5end
chr19	59070239	59070359	CAGE_peak_1_at_UBE2M_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I058553	58553537	58560688	2.34	[{'connected_gene': 'UBE2M', 'score': 550.77}, {'connected_gene': 'CHMP2A', 'score': 550.77}, {'connected_gene': 'TRIM28', 'score': 80.14}, {'connected_gene': 'ZNF417', 'score': 58.65}, {'connected_gene': 'ZNF134', 'score': 57.03}, {'connected_gene': 'ZNF606', 'score': 54.49}, {'connected_gene': 'ZNF274', 'score': 46.08}, {'connected_gene': 'MZF1', 'score': 45.22}, {'connected_gene': 'LOC100128398', 'score': 42.41}, {'connected_gene': 'ERVK3-1', 'score': 40.47}, {'connected_gene': 'ZNF550', 'score': 39.34}, {'connected_gene': 'ZNF586', 'score': 36.91}, {'connected_gene': 'ZNF329', 'score': 34.35}, {'connected_gene': 'ZNF324B', 'score': 33.77}, {'connected_gene': 'ZNF418', 'score': 33.61}, {'connected_gene': 'ZNF446', 'score': 33.42}, {'connected_gene': 'MZF1-AS1', 'score': 29.54}, {'connected_gene': 'ZNF776', 'score': 28.69}, {'connected_gene': 'ZNF135', 'score': 24.97}, {'connected_gene': 'ZSCAN22', 'score': 23.03}, {'connected_gene': 'ZSCAN18', 'score': 22.47}, {'connected_gene': 'ZNF544', 'score': 21.64}, {'connected_gene': 'ZNF587B', 'score': 21.55}, {'connected_gene': 'ZNF587', 'score': 21.47}, {'connected_gene': 'LOC105372482', 'score': 20.64}, {'connected_gene': 'RPS5', 'score': 20.17}, {'connected_gene': 'LOC100419848', 'score': 20.11}, {'connected_gene': 'ENSG00000268392', 'score': 18.22}, {'connected_gene': 'ZNF584', 'score': 17.57}, {'connected_gene': 'CENPBD1P1', 'score': 16.5}, {'connected_gene': 'ZNF551', 'score': 16.1}, {'connected_gene': 'ENSG00000268912', 'score': 14.79}, {'connected_gene': 'ZIK1', 'score': 14.33}, {'connected_gene': 'ZNF132', 'score': 13.22}, {'connected_gene': 'ENSG00000268201', 'score': 12.56}, {'connected_gene': 'ZNF530', 'score': 12.28}, {'connected_gene': 'ZNF416', 'score': 12.04}, {'connected_gene': 'ZNF256', 'score': 11.74}, {'connected_gene': 'LOC105372483', 'score': 10.96}, {'connected_gene': 'ENSG00000232098', 'score': 10.78}, {'connected_gene': 'ZNF324', 'score': 10.76}, {'connected_gene': 'ZSCAN1', 'score': 10.31}, {'connected_gene': 'ENSG00000269600', 'score': 4.38}]
chr19	GH19I058517	58517247	58522169	2.83	[{'connected_gene': 'ZBTB45', 'score': 560.04}, {'connected_gene': 'PIR40518', 'score': 550.77}, {'connected_gene': 'ZNF324B', 'score': 58.62}, {'connected_gene': 'TRIM28', 'score': 47.96}, {'connected_gene': 'ZNF446', 'score': 41.93}, {'connected_gene': 'ZNF134', 'score': 38.29}, {'connected_gene': 'ZNF417', 'score': 37.5}, {'connected_gene': 'ZSCAN22', 'score': 34.61}, {'connected_gene': 'ZNF549', 'score': 32.67}, {'connected_gene': 'ZNF274', 'score': 31.01}, {'connected_gene': 'CENPBD1P1', 'score': 29.16}, {'connected_gene': 'LOC105372483', 'score': 26.97}, {'connected_gene': 'ZNF584', 'score': 26.55}, {'connected_gene': 'ENSG00000268543', 'score': 24.39}, {'connected_gene': 'ZNF135', 'score': 24.3}, {'connected_gene': 'ZNF550', 'score': 23.64}, {'connected_gene': 'ENSG00000232098', 'score': 23.61}, {'connected_gene': 'ZNF132', 'score': 22.8}, {'connected_gene': 'ZNF256', 'score': 22.46}, {'connected_gene': 'MZF1', 'score': 22.24}, {'connected_gene': 'ZSCAN18', 'score': 21.59}, {'connected_gene': 'ZNF606', 'score': 20.9}, {'connected_gene': 'ZNF587', 'score': 20.82}, {'connected_gene': 'ZNF530', 'score': 13.31}, {'connected_gene': 'LOC100128398', 'score': 13.16}, {'connected_gene': 'UBE2M', 'score': 13.11}, {'connected_gene': 'CHMP2A', 'score': 13.11}, {'connected_gene': 'ENSG00000268912', 'score': 12.77}, {'connected_gene': 'LOC105372482', 'score': 12.21}, {'connected_gene': 'ZNF329', 'score': 11.79}, {'connected_gene': 'ZNF587B', 'score': 11.79}, {'connected_gene': 'RNU6-1337P', 'score': 11.6}, {'connected_gene': 'ZNF418', 'score': 11.3}, {'connected_gene': 'ZNF776', 'score': 11.05}, {'connected_gene': 'ZNF324', 'score': 10.97}, {'connected_gene': 'ZNF551', 'score': 10.84}, {'connected_gene': 'LOC100419848', 'score': 10.47}, {'connected_gene': 'ZSCAN4', 'score': 10.33}, {'connected_gene': 'ZNF544', 'score': 9.98}, {'connected_gene': 'ZNF586', 'score': 9.87}, {'connected_gene': 'LOC105372486', 'score': 0.44}]
chr19	GH19I058537	58537187	58539451	1.49	[{'connected_gene': 'ZBTB45', 'score': 550.77}, {'connected_gene': 'ZNF584', 'score': 17.46}, {'connected_gene': 'ZSCAN18', 'score': 7.24}, {'connected_gene': 'ENSG00000232098', 'score': 6.04}, {'connected_gene': 'ZNF8', 'score': 4.12}, {'connected_gene': 'ZNF544', 'score': 3.79}, {'connected_gene': 'TRIM28', 'score': 3.58}, {'connected_gene': 'ZNF329', 'score': 2.41}, {'connected_gene': 'ZNF497', 'score': 1.95}, {'connected_gene': 'ZNF324', 'score': 1.8}, {'connected_gene': 'ZNF135', 'score': 1.66}, {'connected_gene': 'UBE2M', 'score': 1.57}, {'connected_gene': 'MZF1', 'score': 1.52}, {'connected_gene': 'ZNF324B', 'score': 1.45}, {'connected_gene': 'ZNF132', 'score': 1.22}, {'connected_gene': 'PIR40518', 'score': 0.37}]
chr19	GH19I058522	58522634	58523207	0.31	[{'connected_gene': 'TRIM28', 'score': 13.18}, {'connected_gene': 'CHMP2A', 'score': 13.13}, {'connected_gene': 'UBE2M', 'score': 13.11}, {'connected_gene': 'MZF1', 'score': 11.92}, {'connected_gene': 'CENPBD1P1', 'score': 11.92}, {'connected_gene': 'RNU6-1337P', 'score': 11.6}, {'connected_gene': 'ZNF446', 'score': 11.57}, {'connected_gene': 'ZNF324', 'score': 10.96}, {'connected_gene': 'ZNF324B', 'score': 10.74}, {'connected_gene': 'PIR40518', 'score': 0.77}, {'connected_gene': 'ZBTB45', 'score': 0.37}]
chr19	GH19I058580	58580516	58582012	1.14	[{'connected_gene': 'PIR59692', 'score': 550.77}, {'connected_gene': 'ENSG00000268784', 'score': 550.77}, {'connected_gene': 'TRIM28', 'score': 26.13}, {'connected_gene': 'ZNF274', 'score': 16.59}, {'connected_gene': 'ZNF417', 'score': 15.9}, {'connected_gene': 'CENPBD1P1', 'score': 13.05}, {'connected_gene': 'ZNF587', 'score': 12.55}, {'connected_gene': 'ZNF586', 'score': 12.32}, {'connected_gene': 'ZBTB45', 'score': 12.3}, {'connected_gene': 'UBE2M', 'score': 12.28}, {'connected_gene': 'CHMP2A', 'score': 12.25}, {'connected_gene': 'RNU6-1337P', 'score': 11.14}, {'connected_gene': 'ZNF446', 'score': 11.13}, {'connected_gene': 'RPS5', 'score': 11.0}, {'connected_gene': 'ZSCAN22', 'score': 10.88}, {'connected_gene': 'ZNF134', 'score': 10.77}, {'connected_gene': 'ZNF132', 'score': 10.52}, {'connected_gene': 'ZNF587B', 'score': 10.17}, {'connected_gene': 'ENSG00000232098', 'score': 5.73}, {'connected_gene': 'MZF1', 'score': 0.44}]