PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr1	47069901	47069946	CAGE_peak_1_at_MKNK1_5end
chr1	47069955	47069969	CAGE_peak_4_at_MKNK1_5end
chr1	47082476	47082491	CAGE_peak_3_at_MKNK1_5end
chr1	47082495	47082544	CAGE_peak_2_at_MKNK1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I046532	46532949	46533601	1.39	[{'connected_gene': 'EFCAB14', 'score': 10.46}, {'connected_gene': 'MKNK1', 'score': 4.43}, {'connected_gene': 'TEX38', 'score': 1.47}, {'connected_gene': 'LOC105378696', 'score': 0.77}, {'connected_gene': 'GC01P046525', 'score': 0.44}]
chr1	GH01I046749	46749029	46750650	0.69	[{'connected_gene': 'EFCAB14', 'score': 11.4}, {'connected_gene': 'CYP4X1', 'score': 5.74}, {'connected_gene': 'MKNK1', 'score': 4.66}, {'connected_gene': 'CYP4B1', 'score': 0.44}, {'connected_gene': 'GC01P046743', 'score': 0.44}, {'connected_gene': 'GC01M046749', 'score': 0.31}]
chr1	GH01I046653	46653229	46653962	0.62	[{'connected_gene': 'EFCAB14', 'score': 21.03}, {'connected_gene': 'MOB3C', 'score': 11.34}, {'connected_gene': 'MKNK1', 'score': 11.34}, {'connected_gene': 'NENFP1', 'score': 0.39}, {'connected_gene': 'ATPAF1', 'score': 0.34}, {'connected_gene': 'LOC105378697', 'score': 0.31}]
chr1	GH01I046675	46675346	46677604	0.92	[{'connected_gene': 'EFCAB14', 'score': 36.01}, {'connected_gene': 'MOB3C', 'score': 10.06}, {'connected_gene': 'MKNK1', 'score': 10.06}, {'connected_gene': 'EFCAB14-AS1', 'score': 0.77}, {'connected_gene': 'LOC105378698', 'score': 0.39}]
chr1	GH01I046607	46607422	46607826	0.31	[{'connected_gene': 'EFCAB14', 'score': 5.91}, {'connected_gene': 'GC01P046604', 'score': 0.77}, {'connected_gene': 'MOB3C', 'score': 0.44}, {'connected_gene': 'MKNK1', 'score': 0.44}]
chr1	GH01I046603	46603039	46605700	2	[{'connected_gene': 'MKNK1', 'score': 574.72}, {'connected_gene': 'GC01P046604', 'score': 550.77}, {'connected_gene': 'EFCAB14', 'score': 11.23}, {'connected_gene': 'TEX38', 'score': 10.86}, {'connected_gene': 'ATPAF1', 'score': 10.85}, {'connected_gene': 'EFCAB14-AS1', 'score': 10.85}, {'connected_gene': 'KNCN', 'score': 0.23}]
chr1	GH01I046622	46622072	46623178	0.82	[{'connected_gene': 'MKNK1', 'score': 13.5}, {'connected_gene': 'EFCAB14', 'score': 11.34}, {'connected_gene': 'TEX38', 'score': 10.91}, {'connected_gene': 'ATPAF1', 'score': 10.9}, {'connected_gene': 'EFCAB14-AS1', 'score': 10.9}, {'connected_gene': 'LOC105378697', 'score': 0.77}, {'connected_gene': 'MOB3C', 'score': 0.44}]
chr1	GH01I046594	46594013	46595999	0.89	[{'connected_gene': 'MKNK1', 'score': 38.06}, {'connected_gene': 'MOB3C', 'score': 11.54}, {'connected_gene': 'EFCAB14', 'score': 10.78}, {'connected_gene': 'TEX38', 'score': 10.46}, {'connected_gene': 'ATPAF1', 'score': 10.45}, {'connected_gene': 'EFCAB14-AS1', 'score': 10.45}, {'connected_gene': 'GC01P046604', 'score': 0.44}, {'connected_gene': 'KNCN', 'score': 0.26}]
chr1	GH01I046580	46580451	46581200	0.83	[{'connected_gene': 'MKNK1', 'score': 26.85}, {'connected_gene': 'GC01P046604', 'score': 0.34}, {'connected_gene': 'KNCN', 'score': 0.31}]
chr1	GH01I046583	46581650	46581958	0.63	[{'connected_gene': 'MKNK1', 'score': 27.55}, {'connected_gene': 'GC01P046604', 'score': 0.34}, {'connected_gene': 'KNCN', 'score': 0.29}]
chr1	GH01I046704	46704520	46705877	0.49	[{'connected_gene': 'ATPAF1', 'score': 11.1}, {'connected_gene': 'EFCAB14-AS1', 'score': 11.1}, {'connected_gene': 'TEX38', 'score': 11.09}, {'connected_gene': 'MOB3C', 'score': 10.77}, {'connected_gene': 'MKNK1', 'score': 10.77}, {'connected_gene': 'EFCAB14', 'score': 9.78}, {'connected_gene': 'PIR52630', 'score': 0.39}, {'connected_gene': 'LOC105378698', 'score': 0.37}]
chr1	GH01I046610	46610829	46617799	2.17	[{'connected_gene': 'MOB3C', 'score': 561.22}, {'connected_gene': 'MKNK1', 'score': 25.63}, {'connected_gene': 'GC01P046604', 'score': 0.44}]
chr1	GH01I046549	46549229	46550425	0.6	[{'connected_gene': 'KNCN', 'score': 550.77}, {'connected_gene': 'MKNK1', 'score': 8.06}, {'connected_gene': 'CMPK1', 'score': 4.45}, {'connected_gene': 'MKNK1-AS1', 'score': 0.39}]
chr1	GH01I046516	46516549	46518609	1.05	[{'connected_gene': 'KNCN', 'score': 11.97}, {'connected_gene': 'MOB3C', 'score': 5.03}, {'connected_gene': 'MKNK1', 'score': 5.0}, {'connected_gene': 'GC01P046525', 'score': 0.44}, {'connected_gene': 'DMBX1', 'score': 0.31}]
chr1	GH01I046519	46519827	46523387	1.47	[{'connected_gene': 'EFCAB14-AS1', 'score': 33.93}, {'connected_gene': 'GPBP1L1', 'score': 28.96}, {'connected_gene': 'LRRC41', 'score': 27.27}, {'connected_gene': 'RPL7AP16', 'score': 26.78}, {'connected_gene': 'DMBX1', 'score': 18.33}, {'connected_gene': 'RPS15AP10', 'score': 11.99}, {'connected_gene': 'KNCN', 'score': 11.95}, {'connected_gene': 'EFCAB14', 'score': 11.06}, {'connected_gene': 'MOB3C', 'score': 10.78}, {'connected_gene': 'TEX38', 'score': 10.04}, {'connected_gene': 'ATPAF1', 'score': 10.04}, {'connected_gene': 'MKNK1', 'score': 6.61}, {'connected_gene': 'CYP4Z1', 'score': 4.92}, {'connected_gene': 'FAAH', 'score': 4.58}, {'connected_gene': 'GC01P046525', 'score': 0.77}]
chr1	GH01I046606	46606249	46606398	0.2	[{'connected_gene': 'GC01P046604', 'score': 550.77}, {'connected_gene': 'MKNK1', 'score': 25.6}]
chr1	GH01I046581	46581401	46581601	0.46	[{'connected_gene': 'GC01P046604', 'score': 0.34}, {'connected_gene': 'KNCN', 'score': 0.31}, {'connected_gene': 'MKNK1', 'score': 0.28}]
chr1	GH01I046582	46581969	46582118	0.62	[{'connected_gene': 'GC01P046604', 'score': 0.34}, {'connected_gene': 'KNCN', 'score': 0.29}, {'connected_gene': 'MKNK1', 'score': 0.29}]
chr1	GH01I046527	46527049	46527258	0.74	[{'connected_gene': 'GC01P046525', 'score': 550.77}, {'connected_gene': 'DMBX1', 'score': 12.59}, {'connected_gene': 'KNCN', 'score': 11.99}, {'connected_gene': 'EFCAB14', 'score': 10.05}, {'connected_gene': 'MKNK1', 'score': 5.19}, {'connected_gene': 'LOC105378696', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000371946	[[47023089, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037088, 47037211], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069886]]	[[47024246, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037088, 47037211], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000371945	[[47023090, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069909]]	[[47024246, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000341183	[[47023090, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069966]]	[[47024433, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000528077	[[47024064, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069940]]	[[47037796, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000428112	[[47024370, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069898, 47069927]]	[[47024433, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000531355	[[47027153, 47027345], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47048899, 47049001], [47059784, 47059952], [47069898, 47069951]]	[[47042291, 47042326], [47048899, 47049001], [47059784, 47059818]]
ENST00000496619	[[47034127, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069898, 47069966]]	[[47034127, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000526513	[[47037829, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048485, 47048595], [47048899, 47049001], [47059784, 47059952], [47069856, 47069896]]	[[47048548, 47048595], [47048899, 47049001], [47059784, 47059818]]
ENST00000484301	[[47039405, 47042326], [47046201, 47046299], [47048485, 47048577], [47048899, 47049001], [47051545, 47051646], [47059784, 47059878]]	None
ENST00000545730	[[47040146, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47082382, 47082515]]	[[47040604, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000486716	[[47040497, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059903]]	None
ENST00000529170	[[47042255, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069836, 47069927]]	[[47042255, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000531769	[[47042260, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47082382, 47082515]]	[[47042260, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000465783	[[47046105, 47046299], [47048899, 47049001], [47059784, 47059952]]	[[47046159, 47046299], [47048899, 47049001], [47059784, 47059818]]
ENST00000474868	[[47046111, 47046299], [47048899, 47049001], [47051545, 47051646], [47059784, 47059933]]	[[47051566, 47051646], [47059784, 47059818]]
ENST00000532110	[[47046267, 47046299], [47048899, 47049001], [47059784, 47059952], [47060539, 47060731]]	[[47046267, 47046299], [47048899, 47049001], [47059784, 47059952], [47060539, 47060615]]
ENST00000525888	[[47050218, 47050475], [47051545, 47051646], [47059784, 47059952], [47069856, 47069918]]	None
ENST00000342571	[[47023089, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051643]]	[[47037796, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051561]]
ENST00000371944	[[47023090, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051643]]	[[47024246, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046224]]
ENST00000524749	[[47023904, 47024472], [47028320, 47028515], [47030712, 47030735]]	[[47024433, 47024472], [47028320, 47028515], [47030712, 47030735]]
ENST00000532897	[[47024427, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037972]]	None
ENST00000530528	[[47027148, 47027314], [47028320, 47028707]]	None
ENST00000470237	[[47027243, 47027314], [47028320, 47028515], [47030712, 47030808], [47033909, 47034109]]	None
ENST00000524417	[[47028370, 47028515], [47030712, 47031098]]	None
ENST00000460098	[[47028420, 47028515], [47030712, 47030808], [47033988, 47034134]]	None
ENST00000532783	[[47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051167, 47051232]]	[[47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47048999]]
ENST00000528237	[[47037780, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051646], [47051905, 47051931]]	[[47037780, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051561]]
ENST00000480531	[[47041939, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051607]]	None
ENST00000477883	[[47050175, 47050475], [47051545, 47051941]]	None
ENST00000468852	[[47059194, 47059524], [47059784, 47059952], [47069856, 47069942]]	None
NR_024176	[[47023078, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47051545, 47051646], [47059784, 47059952], [47069856, 47069966]]	None
NM_003684	[[47023078, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037088, 47037211], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069966]]	[[47024246, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037088, 47037211], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
NM_001135553	[[47023078, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069966]]	[[47024246, 47024472], [47025905, 47025949], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]
NR_024174	[[47023078, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069856, 47069966]]	None
NM_198973	[[47023078, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059952], [47069898, 47069966]]	[[47024433, 47024472], [47027149, 47027314], [47028320, 47028515], [47030712, 47030808], [47034114, 47034170], [47037734, 47037839], [47040618, 47040692], [47042246, 47042326], [47046201, 47046299], [47048899, 47049001], [47059784, 47059818]]