Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000370544 [[87794150, 87794927], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87814606]] [[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]
ENST00000495705 [[87794781, 87794927], [87796909, 87796992], [87797695, 87797934], [87805218, 87805315]] None
ENST00000370542 [[87797350, 87797497], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87811091]] [[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]
ENST00000489303 [[87797463, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810698]] None
NM_006769 [[87794150, 87794927], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87814606]] [[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]
Promoter
Chrom Start End Description
chr1 87794133 87794144 CAGE_peak_6_at_LMO4_5end
chr1 87794150 87794172 CAGE_peak_2_at_LMO4_5end
chr1 87794211 87794240 CAGE_peak_4_at_LMO4_5end
chr1 87794543 87794585 CAGE_peak_1_at_LMO4_5end
chr1 87794768 87794789 CAGE_peak_10_at_LMO4_5end
chr1 87794863 87794896 CAGE_peak_7_at_LMO4_5end
chr1 87797121 87797168 CAGE_peak_9_at_LMO4_5end
chr1 87797382 87797441 CAGE_peak_3_at_LMO4_5end
chr1 87797566 87797580 CAGE_peak_13_at_LMO4_5end
chr1 87797775 87797849 CAGE_peak_8_at_LMO4_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr1 GH01I087327 87327200 87332822 2.64 [{'connected_gene': 'LMO4', 'score': 550.77}, {'connected_gene': 'ODF2L', 'score': 10.19}, {'connected_gene': 'GC01P087340', 'score': 0.39}]
chr1 GH01I087293 87293615 87293823 0.51 [{'connected_gene': 'LMO4', 'score': 11.89}, {'connected_gene': 'GC01P087307', 'score': 0.39}, {'connected_gene': 'GC01P087276', 'score': 0.37}]
chr1 GH01I087334 87333012 87333128 0.51 [{'connected_gene': 'LMO4', 'score': 0.77}, {'connected_gene': 'GC01P087340', 'score': 0.44}]
chr1 GH01I087333 87333401 87337177 2 [{'connected_gene': 'LMO4', 'score': 0.44}, {'connected_gene': 'GC01P087340', 'score': 0.44}]
chr1 GH01I087223 87223634 87227360 1.17 [{'connected_gene': 'LINC01140', 'score': 5.55}, {'connected_gene': 'HS2ST1', 'score': 1.72}, {'connected_gene': 'LMO4', 'score': 1.5}, {'connected_gene': 'GC01P087235', 'score': 0.39}, {'connected_gene': 'LOC101927844', 'score': 0.39}]
chr1 GH01I087131 87131256 87132891 1.35 [{'connected_gene': 'LINC01140', 'score': 7.54}, {'connected_gene': 'LMO4', 'score': 4.43}, {'connected_gene': 'GC01M087128', 'score': 0.77}, {'connected_gene': 'GC01M087175', 'score': 0.25}, {'connected_gene': 'ENSG00000267561', 'score': 0.12}]
chr1 GH01I087202 87202401 87203400 0.93 [{'connected_gene': 'GC01M087204', 'score': 550.77}, {'connected_gene': 'HS2ST1', 'score': 2.43}, {'connected_gene': 'LMO4', 'score': 1.9}, {'connected_gene': 'GC01M087194', 'score': 0.44}]
chr1 GH01I087347 87347130 87347334 0.51 [{'connected_gene': 'GC01P087340', 'score': 0.44}, {'connected_gene': 'GC01M087361', 'score': 0.39}, {'connected_gene': 'LMO4', 'score': 0.37}]
chr1 GH01I087341 87341136 87341434 0.4 [{'connected_gene': 'GC01P087340', 'score': 550.77}, {'connected_gene': 'LMO4', 'score': 0.39}, {'connected_gene': 'GC01M087361', 'score': 0.34}]
chr1 GH01I087345 87345086 87345383 0.51 [{'connected_gene': 'GC01P087340', 'score': 0.77}, {'connected_gene': 'LMO4', 'score': 0.37}, {'connected_gene': 'GC01M087361', 'score': 0.37}]
chr1 GH01I087337 87337732 87339529 1.09 [{'connected_gene': 'GC01P087340', 'score': 0.77}, {'connected_gene': 'LMO4', 'score': 0.39}]
chr1 GH01I087326 87326058 87326483 1.14 [{'connected_gene': 'GC01P087325', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 4.15}, {'connected_gene': 'LMO4', 'score': 0.77}]