PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370544	[[87794150, 87794927], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87814606]]	[[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]
ENST00000495705	[[87794781, 87794927], [87796909, 87796992], [87797695, 87797934], [87805218, 87805315]]	None
ENST00000370542	[[87797350, 87797497], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87811091]]	[[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]
ENST00000489303	[[87797463, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810698]]	None
NM_006769	[[87794150, 87794927], [87797695, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87814606]]	[[87797698, 87797934], [87805218, 87805315], [87805729, 87805885], [87810470, 87810479]]

Promoter

Chrom	Start	End	Description
chr1	87794133	87794144	CAGE_peak_6_at_LMO4_5end
chr1	87794150	87794172	CAGE_peak_2_at_LMO4_5end
chr1	87794211	87794240	CAGE_peak_4_at_LMO4_5end
chr1	87794543	87794585	CAGE_peak_1_at_LMO4_5end
chr1	87794768	87794789	CAGE_peak_10_at_LMO4_5end
chr1	87794863	87794896	CAGE_peak_7_at_LMO4_5end
chr1	87797121	87797168	CAGE_peak_9_at_LMO4_5end
chr1	87797382	87797441	CAGE_peak_3_at_LMO4_5end
chr1	87797566	87797580	CAGE_peak_13_at_LMO4_5end
chr1	87797775	87797849	CAGE_peak_8_at_LMO4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I087327	87327200	87332822	2.64	[{'connected_gene': 'LMO4', 'score': 550.77}, {'connected_gene': 'ODF2L', 'score': 10.19}, {'connected_gene': 'GC01P087340', 'score': 0.39}]
chr1	GH01I087293	87293615	87293823	0.51	[{'connected_gene': 'LMO4', 'score': 11.89}, {'connected_gene': 'GC01P087307', 'score': 0.39}, {'connected_gene': 'GC01P087276', 'score': 0.37}]
chr1	GH01I087334	87333012	87333128	0.51	[{'connected_gene': 'LMO4', 'score': 0.77}, {'connected_gene': 'GC01P087340', 'score': 0.44}]
chr1	GH01I087333	87333401	87337177	2	[{'connected_gene': 'LMO4', 'score': 0.44}, {'connected_gene': 'GC01P087340', 'score': 0.44}]
chr1	GH01I087223	87223634	87227360	1.17	[{'connected_gene': 'LINC01140', 'score': 5.55}, {'connected_gene': 'HS2ST1', 'score': 1.72}, {'connected_gene': 'LMO4', 'score': 1.5}, {'connected_gene': 'GC01P087235', 'score': 0.39}, {'connected_gene': 'LOC101927844', 'score': 0.39}]
chr1	GH01I087131	87131256	87132891	1.35	[{'connected_gene': 'LINC01140', 'score': 7.54}, {'connected_gene': 'LMO4', 'score': 4.43}, {'connected_gene': 'GC01M087128', 'score': 0.77}, {'connected_gene': 'GC01M087175', 'score': 0.25}, {'connected_gene': 'ENSG00000267561', 'score': 0.12}]
chr1	GH01I087202	87202401	87203400	0.93	[{'connected_gene': 'GC01M087204', 'score': 550.77}, {'connected_gene': 'HS2ST1', 'score': 2.43}, {'connected_gene': 'LMO4', 'score': 1.9}, {'connected_gene': 'GC01M087194', 'score': 0.44}]
chr1	GH01I087347	87347130	87347334	0.51	[{'connected_gene': 'GC01P087340', 'score': 0.44}, {'connected_gene': 'GC01M087361', 'score': 0.39}, {'connected_gene': 'LMO4', 'score': 0.37}]
chr1	GH01I087341	87341136	87341434	0.4	[{'connected_gene': 'GC01P087340', 'score': 550.77}, {'connected_gene': 'LMO4', 'score': 0.39}, {'connected_gene': 'GC01M087361', 'score': 0.34}]
chr1	GH01I087345	87345086	87345383	0.51	[{'connected_gene': 'GC01P087340', 'score': 0.77}, {'connected_gene': 'LMO4', 'score': 0.37}, {'connected_gene': 'GC01M087361', 'score': 0.37}]
chr1	GH01I087337	87337732	87339529	1.09	[{'connected_gene': 'GC01P087340', 'score': 0.77}, {'connected_gene': 'LMO4', 'score': 0.39}]
chr1	GH01I087326	87326058	87326483	1.14	[{'connected_gene': 'GC01P087325', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 4.15}, {'connected_gene': 'LMO4', 'score': 0.77}]