PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369159	[[149822642, 149823191]]	[[149822680, 149823073]]
NM_003516	[[149813784, 149814318]]	[[149813872, 149814265]]

Promoter

Chrom	Start	End	Description
chr1	149822620	149822635	CAGE_peak_1_at_HIST2H2AA3_5end,CAGE_peak_1_at_HIST2H2AA4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I150000	150000575	150004569	0.79	[{'connected_gene': 'SV2A', 'score': 26.68}, {'connected_gene': 'PRPF3', 'score': 22.7}, {'connected_gene': 'HIST2H2AB', 'score': 22.02}, {'connected_gene': 'SF3B4', 'score': 21.4}, {'connected_gene': 'SETDB1', 'score': 18.48}, {'connected_gene': 'RPRD2', 'score': 17.77}, {'connected_gene': 'UBE2D3P3', 'score': 15.05}, {'connected_gene': 'VPS45', 'score': 13.6}, {'connected_gene': 'ARNT', 'score': 12.98}, {'connected_gene': 'MTMR11', 'score': 11.07}, {'connected_gene': 'BOLA1', 'score': 11.04}, {'connected_gene': 'HIST2H2AC', 'score': 11.04}, {'connected_gene': 'HIST2H2BE', 'score': 11.04}, {'connected_gene': 'PLEKHO1', 'score': 10.23}, {'connected_gene': 'HIST2H2AA3', 'score': 4.38}, {'connected_gene': 'OTUD7B', 'score': 0.44}, {'connected_gene': 'PIR49087', 'score': 0.21}]
chr1	GH01I150015	150015734	150018080	1.08	[{'connected_gene': 'SV2A', 'score': 14.17}, {'connected_gene': 'MTMR11', 'score': 7.75}, {'connected_gene': 'ENSG00000261716', 'score': 4.99}, {'connected_gene': 'HIST2H2AA3', 'score': 4.77}, {'connected_gene': 'HIST2H2AB', 'score': 4.47}, {'connected_gene': 'OTUD7B', 'score': 0.44}, {'connected_gene': 'GC01P150029', 'score': 0.39}]
chr1	GH01I150061	150061386	150062280	0.79	[{'connected_gene': 'HIST2H2AC', 'score': 14.66}, {'connected_gene': 'OTUD7B', 'score': 11.24}, {'connected_gene': 'MTMR11', 'score': 11.2}, {'connected_gene': 'PLEKHO1', 'score': 11.04}, {'connected_gene': 'HIST2H2AA3', 'score': 10.32}, {'connected_gene': 'HIST2H2BD', 'score': 10.32}, {'connected_gene': 'SF3B4', 'score': 10.32}, {'connected_gene': 'HIST2H3C', 'score': 10.32}, {'connected_gene': 'HIST2H2BE', 'score': 10.05}, {'connected_gene': 'BOLA1', 'score': 10.05}, {'connected_gene': 'LOC105371427', 'score': 0.44}, {'connected_gene': 'LOC441907', 'score': 0.44}, {'connected_gene': 'GC01M150063', 'score': 0.44}]
chr1	GH01I149840	149840200	149846393	2	[{'connected_gene': 'HIST2H2AA3', 'score': 555.39}, {'connected_gene': 'HIST2H3C', 'score': 550.77}, {'connected_gene': 'GC01P149843', 'score': 550.77}, {'connected_gene': 'HIST2H2BD', 'score': 550.77}, {'connected_gene': 'SV2A', 'score': 20.53}, {'connected_gene': 'HIST2H2AC', 'score': 12.95}, {'connected_gene': 'HIST2H2BE', 'score': 12.95}, {'connected_gene': 'BOLA1', 'score': 12.95}, {'connected_gene': 'MTMR11', 'score': 9.57}, {'connected_gene': 'ENSG00000261716', 'score': 5.25}, {'connected_gene': 'ENSG00000272993', 'score': 0.77}]
chr1	GH01I149846	149846917	149853601	2.2	[{'connected_gene': 'ENSG00000261716', 'score': 555.59}, {'connected_gene': 'HIST2H2AA4', 'score': 550.77}, {'connected_gene': 'GC01M149850', 'score': 550.77}, {'connected_gene': 'HIST2H2BC', 'score': 550.77}, {'connected_gene': 'HIST2H3A', 'score': 550.77}, {'connected_gene': 'HIST2H2AC', 'score': 12.03}, {'connected_gene': 'HIST2H2BE', 'score': 12.03}, {'connected_gene': 'BOLA1', 'score': 12.03}, {'connected_gene': 'MTMR11', 'score': 9.58}, {'connected_gene': 'HIST2H2AA3', 'score': 4.84}, {'connected_gene': 'LOC102723955', 'score': 4.11}]