PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368314	[[127587754, 127588070], [127601375, 127601485], [127607760, 127609703]]	[[127601483, 127601485], [127607760, 127608838]]
ENST00000476956	[[127587870, 127588240], [127601375, 127601485], [127607194, 127607322], [127607760, 127608036]]	[[127601483, 127601485], [127607194, 127607315]]
ENST00000609447	[[127587984, 127588070], [127601375, 127601485], [127603431, 127603540], [127607194, 127607496]]	[[127603532, 127603540], [127607194, 127607315]]
ENST00000356799	[[127587993, 127588070], [127601375, 127601485], [127607194, 127607322], [127607760, 127609712]]	[[127601483, 127601485], [127607194, 127607315]]
ENST00000495188	[[127587995, 127588070], [127601375, 127601893]]	None
ENST00000477776	[[127588008, 127588189], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127607994]]	[[127603532, 127603540], [127607194, 127607315]]
ENST00000609944	[[127588016, 127588189], [127601375, 127601485], [127601660, 127601749], [127603431, 127603540], [127607194, 127607229]]	[[127603532, 127603540], [127607194, 127607229]]
ENST00000309649	[[127588019, 127588070], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127609502]]	[[127607761, 127608838]]
ENST00000608340	[[127588027, 127588240], [127601375, 127601485], [127606352, 127606493], [127607194, 127607242]]	None
ENST00000610162	[[127588027, 127588240], [127601375, 127601485], [127601660, 127601749], [127607194, 127607322], [127607760, 127607788]]	[[127607761, 127607788]]
ENST00000489534	[[127588027, 127588189], [127601375, 127601485], [127607760, 127608098]]	None
ENST00000608991	[[127588027, 127588070], [127601375, 127601485], [127606352, 127606493], [127607194, 127607322], [127607760, 127609507]]	[[127607761, 127608838]]
ENST00000610153	[[127588027, 127588240], [127601375, 127601485], [127607760, 127609507]]	[[127601483, 127601485], [127607760, 127608838]]
ENST00000480444	[[127588032, 127588240], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127608048]]	[[127603532, 127603540], [127607194, 127607315]]
NM_001242851	[[127587826, 127587854], [127601375, 127601485], [127607760, 127609707]]	[[127601483, 127601485], [127607760, 127608838]]
NM_001242849	[[127587882, 127588240], [127601375, 127601485], [127607760, 127609707]]	[[127601483, 127601485], [127607760, 127608838]]
NM_001242847	[[127587882, 127588240], [127601375, 127601485], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_001242844	[[127587882, 127588240], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_001242852	[[127587882, 127588240], [127601375, 127601485], [127601660, 127601749], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_001242850	[[127587982, 127588070], [127601375, 127601485], [127607760, 127609707]]	[[127601483, 127601485], [127607760, 127608838]]
NM_001242848	[[127587982, 127588070], [127601375, 127601485], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_001242846	[[127587982, 127588070], [127601375, 127601485], [127606352, 127606493], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_030963	[[127587982, 127588070], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]
NM_001242845	[[127587982, 127588189], [127601375, 127601485], [127603431, 127603540], [127607194, 127607322], [127607760, 127609707]]	[[127607761, 127608838]]

Promoter

Chrom	Start	End	Description
chr6	127587977	127588016	CAGE_peak_1_at_RNF146_5end
chr6	127588020	127588038	CAGE_peak_2_at_RNF146_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I127160	127160543	127160928	0.46	[{'connected_gene': 'RSPO3', 'score': 13.87}, {'connected_gene': 'RNF146', 'score': 1.57}, {'connected_gene': 'LOC105377989', 'score': 0.26}]
chr6	GH06I127146	127146996	127147245	0.57	[{'connected_gene': 'RSPO3', 'score': 10.96}, {'connected_gene': 'LOC105377989', 'score': 0.31}, {'connected_gene': 'RNF146', 'score': 0.13}]
chr6	GH06I127172	127172921	127174177	0.31	[{'connected_gene': 'RSPO3', 'score': 0.23}, {'connected_gene': 'LOC105377989', 'score': 0.23}, {'connected_gene': 'RNF146', 'score': 0.16}]
chr6	GH06I127176	127176499	127177569	0.52	[{'connected_gene': 'RSPO3', 'score': 0.22}, {'connected_gene': 'LOC105377989', 'score': 0.22}, {'connected_gene': 'RNF146', 'score': 0.17}]
chr6	GH06I127191	127191936	127194209	0.76	[{'connected_gene': 'RSPO3', 'score': 0.19}, {'connected_gene': 'LOC105377989', 'score': 0.19}, {'connected_gene': 'RNF146', 'score': 0.19}]
chr6	GH06I127102	127102000	127102800	1.17	[{'connected_gene': 'RNF146', 'score': 2.49}, {'connected_gene': 'RSPO3', 'score': 0.37}, {'connected_gene': 'LOC105377989', 'score': 0.37}, {'connected_gene': 'LOC105377991', 'score': 0.07}]
chr6	GH06I127114	127114352	127114702	0.33	[{'connected_gene': 'RNF146', 'score': 1.94}, {'connected_gene': 'RSPO3', 'score': 0.77}, {'connected_gene': 'LOC105377989', 'score': 0.44}, {'connected_gene': 'LOC105377991', 'score': 0.07}]
chr6	GH06I127115	127115156	127115405	0.43	[{'connected_gene': 'RNF146', 'score': 2.25}, {'connected_gene': 'RSPO3', 'score': 0.77}, {'connected_gene': 'LOC105377989', 'score': 0.77}, {'connected_gene': 'LOC105377991', 'score': 0.07}]
chr6	GH06I127265	127265976	127269556	2.26	[{'connected_gene': 'RNF146', 'score': 550.77}, {'connected_gene': 'ECHDC1', 'score': 14.87}, {'connected_gene': 'CENPW', 'score': 14.28}, {'connected_gene': 'LOC105377994', 'score': 0.31}]
chr6	GH06I127281	127281411	127281470	0.5	[{'connected_gene': 'RNF146', 'score': 550.37}, {'connected_gene': 'LOC105377994', 'score': 0.37}]
chr6	GH06I127201	127201476	127201625	0.2	[{'connected_gene': 'RNF146', 'score': 0.21}, {'connected_gene': 'LOC105377989', 'score': 0.18}]
chr6	GH06I127247	127247746	127248060	0.22	[{'connected_gene': 'RNF146', 'score': 0.37}, {'connected_gene': 'LOC105377989', 'score': 0.13}]
chr6	GH06I127204	127204601	127205000	0.2	[{'connected_gene': 'RNF146', 'score': 0.21}, {'connected_gene': 'LOC105377989', 'score': 0.18}]
chr6	GH06I127271	127271069	127273472	0.31	[{'connected_gene': 'ECHDC1', 'score': 15.59}, {'connected_gene': 'KIAA0408', 'score': 10.12}, {'connected_gene': 'RNF146', 'score': 0.44}, {'connected_gene': 'LOC105377994', 'score': 0.34}]
chr6	GH06I127419	127419958	127421504	1.32	[{'connected_gene': 'ECHDC1', 'score': 24.57}, {'connected_gene': 'KIAA0408', 'score': 11.75}, {'connected_gene': 'RNF146', 'score': 2.42}, {'connected_gene': 'LOC100287856', 'score': 0.77}, {'connected_gene': 'RPL17P23', 'score': 0.39}]
chr6	GH06I127397	127397576	127398482	0.84	[{'connected_gene': 'ECHDC1', 'score': 14.1}, {'connected_gene': 'KIAA0408', 'score': 10.55}, {'connected_gene': 'RNF146', 'score': 1.99}, {'connected_gene': 'LOC100287856', 'score': 0.37}, {'connected_gene': 'GC06P127375', 'score': 0.34}]
chr6	GH06I127275	127275509	127279168	0.7	[{'connected_gene': 'ECHDC1', 'score': 15.88}, {'connected_gene': 'RNF146', 'score': 0.39}, {'connected_gene': 'LOC105377994', 'score': 0.37}]
chr6	GH06I127424	127424101	127424380	0.22	[{'connected_gene': 'ECHDC1', 'score': 13.73}, {'connected_gene': 'RNF146', 'score': 2.78}, {'connected_gene': 'LOC100287856', 'score': 0.44}, {'connected_gene': 'RPL17P23', 'score': 0.39}]
chr6	GH06I127288	127288298	127289441	0.38	[{'connected_gene': 'ECHDC1', 'score': 15.73}, {'connected_gene': 'LOC105377994', 'score': 0.44}, {'connected_gene': 'RNF146', 'score': 0.34}]
chr6	GH06I127121	127121001	127121824	0.95	[{'connected_gene': 'LOC105377989', 'score': 550.77}, {'connected_gene': 'RSPO3', 'score': 3.61}, {'connected_gene': 'RNF146', 'score': 0.11}]