PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000561823	[[87417600, 87417802], [87423367, 87423478], [87425203, 87425346]]	None
ENST00000562778	[[87417661, 87417802], [87423156, 87423319], [87425203, 87425459]]	None
ENST00000599768	[[87423366, 87423437], [87425203, 87425344]]	None
ENST00000563720	[[87423375, 87423521], [87425203, 87425344]]	None
ENST00000268607	[[87425405, 87426073], [87432420, 87432476], [87435780, 87435887], [87436528, 87438385]]	[[87426033, 87426073], [87432420, 87432476], [87435780, 87435887], [87436528, 87436703]]
ENST00000570189	[[87425922, 87426073], [87432420, 87432476], [87433203, 87433292], [87435780, 87435887], [87436528, 87437384]]	[[87426033, 87426073], [87432420, 87432476], [87433203, 87433251]]
ENST00000565788	[[87425939, 87426073], [87432420, 87432476], [87435780, 87436215]]	[[87426033, 87426073], [87432420, 87432476], [87435780, 87435912]]
ENST00000564844	[[87425949, 87426925], [87432420, 87432476], [87433203, 87433292], [87435780, 87435887], [87436528, 87438385]]	[[87426033, 87426240]]
ENST00000564638	[[87426028, 87426073], [87432420, 87433110]]	None
ENST00000534986	[[87426400, 87426925], [87432420, 87432476], [87433203, 87433292], [87435780, 87435887], [87436528, 87438369]]	[[87435861, 87435887], [87436528, 87436703]]
NM_022818	[[87425800, 87426073], [87432420, 87432476], [87435780, 87435887], [87436528, 87438380]]	[[87426033, 87426073], [87432420, 87432476], [87435780, 87435887], [87436528, 87436703]]

Promoter

Chrom	Start	End	Description
chr16	87425381	87425393	CAGE_peak_8_at_MAP1LC3B_5end
chr16	87425788	87425833	CAGE_peak_3_at_MAP1LC3B_5end
chr16	87425889	87425897	CAGE_peak_2_at_MAP1LC3B_5end
chr16	87425914	87425959	CAGE_peak_1_at_MAP1LC3B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I087379	87379079	87380030	1.06	[{'connected_gene': 'MAP1LC3B', 'score': 0.77}, {'connected_gene': 'PIR52096', 'score': 0.39}, {'connected_gene': 'FBXO31', 'score': 0.39}]
chr16	GH16I087015	87015116	87015355	0.23	[{'connected_gene': 'MAP1LC3B', 'score': 1.88}, {'connected_gene': 'LOC105371393', 'score': 0.26}, {'connected_gene': 'GC16M086906', 'score': 0.14}]
chr16	GH16I087864	87864973	87873764	2.59	[{'connected_gene': 'SLC7A5', 'score': 550.77}, {'connected_gene': 'ZC3H18', 'score': 34.93}, {'connected_gene': 'BANP', 'score': 23.48}, {'connected_gene': 'KLHDC4', 'score': 21.68}, {'connected_gene': 'ZCCHC14', 'score': 14.83}, {'connected_gene': 'CTU2', 'score': 10.73}, {'connected_gene': 'TRAPPC2L', 'score': 10.13}, {'connected_gene': 'CA5A', 'score': 8.33}, {'connected_gene': 'MAP1LC3B', 'score': 1.77}, {'connected_gene': 'FBXO31', 'score': 1.41}, {'connected_gene': 'PIR45032', 'score': 0.44}]
chr16	GH16I087390	87390698	87394724	2.3	[{'connected_gene': 'FBXO31', 'score': 561.08}, {'connected_gene': 'MAP1LC3B', 'score': 550.44}, {'connected_gene': 'MTHFSD', 'score': 46.57}, {'connected_gene': 'BANP', 'score': 27.43}, {'connected_gene': 'KLHDC4', 'score': 10.07}, {'connected_gene': 'ZCCHC14', 'score': 9.95}, {'connected_gene': 'ENSG00000261592', 'score': 0.44}]
chr16	GH16I087375	87375407	87377085	1.07	[{'connected_gene': 'FBXO31', 'score': 9.61}, {'connected_gene': 'MAP1LC3B', 'score': 0.44}, {'connected_gene': 'PIR52096', 'score': 0.44}]
chr16	GH16I087369	87369987	87372234	0.78	[{'connected_gene': 'FBXO31', 'score': 10.05}, {'connected_gene': 'PIR52096', 'score': 0.77}, {'connected_gene': 'MAP1LC3B', 'score': 0.39}]
chr16	GH16I087380	87380351	87385621	2.33	[{'connected_gene': 'FBXO31', 'score': 578.11}, {'connected_gene': 'TRM-CAT6-1', 'score': 550.77}, {'connected_gene': 'MAP1LC3B', 'score': 550.77}, {'connected_gene': 'GC16M087385', 'score': 550.77}, {'connected_gene': 'ZCCHC14', 'score': 24.88}, {'connected_gene': 'PIR52096', 'score': 0.37}]
chr16	GH16I087386	87386060	87390017	1.31	[{'connected_gene': 'MTHFSD', 'score': 24.58}, {'connected_gene': 'FBXO31', 'score': 18.97}, {'connected_gene': 'ZCCHC14', 'score': 18.86}, {'connected_gene': 'KLHDC4', 'score': 10.07}, {'connected_gene': 'BANP', 'score': 9.81}, {'connected_gene': 'TRM-CAT6-1', 'score': 0.77}, {'connected_gene': 'MAP1LC3B', 'score': 0.77}, {'connected_gene': 'GC16M087385', 'score': 0.77}]
chr16	GH16I087576	87576315	87576504	0.38	[{'connected_gene': 'JPH3', 'score': 12.13}, {'connected_gene': 'KLHDC4', 'score': 11.0}, {'connected_gene': 'MAP1LC3B', 'score': 5.67}, {'connected_gene': 'PIR35253', 'score': 0.22}]
chr16	GH16I087841	87841021	87863965	1.85	[{'connected_gene': 'BANP', 'score': 14.56}, {'connected_gene': 'SLC7A5', 'score': 11.53}, {'connected_gene': 'FBXO31', 'score': 6.14}, {'connected_gene': 'LOC400553', 'score': 6.09}, {'connected_gene': 'ZCCHC14', 'score': 5.21}, {'connected_gene': 'APRT', 'score': 4.94}, {'connected_gene': 'MAP1LC3B', 'score': 3.1}, {'connected_gene': 'CA5A', 'score': 3.1}, {'connected_gene': 'KLHDC4', 'score': 1.74}, {'connected_gene': 'PIR45032', 'score': 0.44}, {'connected_gene': 'ENSG00000260466', 'score': 0.37}]
chr16	GH16I087469	87469530	87472695	1.22	[{'connected_gene': 'KLHDC4', 'score': 10.07}, {'connected_gene': 'ZCCHC14', 'score': 6.9}, {'connected_gene': 'MAP1LC3B', 'score': 5.36}, {'connected_gene': 'ENSG00000276337', 'score': 0.77}, {'connected_gene': 'NR3C1P1', 'score': 0.77}]
chr16	GH16I087459	87459709	87467630	1.73	[{'connected_gene': 'KLHDC4', 'score': 10.07}, {'connected_gene': 'LOC101928659', 'score': 9.87}, {'connected_gene': 'ZCCHC14', 'score': 8.6}, {'connected_gene': 'MAP1LC3B', 'score': 7.12}, {'connected_gene': 'FBXO31', 'score': 6.14}, {'connected_gene': 'BANP', 'score': 4.27}, {'connected_gene': 'NR3C1P1', 'score': 0.77}, {'connected_gene': 'ENSG00000261592', 'score': 0.21}]
chr16	GH16I087385	87385692	87385732	0.4	[{'connected_gene': 'TRM-CAT6-1', 'score': 550.77}, {'connected_gene': 'MAP1LC3B', 'score': 550.77}, {'connected_gene': 'GC16M087385', 'score': 550.77}, {'connected_gene': 'FBXO31', 'score': 0.44}]
chr16	GH16I087368	87368800	87369000	0.38	[{'connected_gene': 'PIR52096', 'score': 550.77}, {'connected_gene': 'MAP1LC3B', 'score': 0.37}, {'connected_gene': 'FBXO31', 'score': 0.34}]