PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
MAP1LC3B	1	BNIP3	2	affinity chromatography technology, imaging technique, pull down	Zhu Y (2013), Zhu Y (2013), Zhu Y (2013)	3
CALCOCO2	0	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology	Thurston TL (2009), Verlhac P (2015)	2
MAP1LC3B	1	ATG3	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
MAP1LC3B	1	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
EED	1	ADNP	37	affinity chromatography technology	Cao Q (2014)	1
BNIP3	2	BNIP3L	1	two hybrid, two hybrid, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology	Rual JF (2005), Venkatesan K (2009), Rolland T (2014), Huttlin EL (2015), Yu H (2011), Huttlin EL (2017)	6
CUL3	17	KLHL5	0	affinity chromatography technology, two hybrid	Bennett EJ (2010), Wang J (2011)	2
MAP1LC3B	1	TBC1D25	3	two hybrid, pull down	Itoh T (2011), Itoh T (2011)	2
GABARAPL2	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
CDK1	0	SAFB	3	affinity chromatography technology	Malty RH (2017)	1
MAP1LC3B	1	EED	1	two hybrid	Vinayagam A (2011)	1
SQSTM1	0	HADHA	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
MAP1LC3B	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
TNIP1	1	TBK1	1	affinity chromatography technology, affinity chromatography technology	Gao L (2011), Gao L (2011)	2
MAP1LC3B	1	FLCN	1	pull down	Dunlop EA (2014)	1
ADRB2	0	NEDD4	2	affinity chromatography technology, affinity chromatography technology	Nabhan JF (2010), Han SO (2012)	2
MAP1LC3B	1	STK4	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL2	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
TP53	0	SMARCB1	1	pull down, affinity chromatography technology, pull down, biochemical	Lee D (2002), Lee D (2002), Lee D (2002), Lee D (2002)	4
CDK1	0	STK3	1	enzymatic study	Chen X (2016)	1
CUL3	17	SMARCB1	1	affinity chromatography technology	Bennett EJ (2010)	1
GABARAPL2	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	LMNB1	1	pull down, affinity chromatography technology, affinity chromatography technology, protein complementation assay, imaging technique	Dou Z (2015), Dou Z (2015), Dou Z (2015), Dou Z (2015), Dou Z (2015)	5
MAP1LC3A	0	CLTA	1	affinity chromatography technology	Behrends C (2010)	1
NEDD4	2	LUC7L2	0	enzymatic study	Persaud A (2009)	1
GABARAP	0	ATG13	0	affinity chromatography technology, unspecified method, two hybrid	Alemu EA (2012), Alemu EA (2012), Fujita N (2013)	3
HDAC1	4	ADNP	37	affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015)	2
RASSF5	2	STK3	1	affinity chromatography technology, two hybrid, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Wang J (2011), Couzens AL (2013), Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	7
CASP8	1	PRKCI	1	two hybrid	Wang J (2011)	1
GABARAPL2	0	CUL3	17	affinity chromatography technology, pull down	Behrends C (2010), Genau HM (2015)	2
MAP1LC3B	1	THAP7	0	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	TBC1D9B	4	two hybrid, two hybrid	Popovic D (2012), Rolland T (2014)	2
TBC1D25	3	GABARAP	0	two hybrid, two hybrid, pull down, pull down, affinity chromatography technology	Itoh T (2011), Itoh T (2011), Itoh T (2011), Hirano S (2016), Huttlin EL (2017)	5
DCTN1	6	MAP1LC3B	1	bioid	Gupta GD (2015)	1
GABARAPL2	0	ATG3	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Ewing RM (2007), Behrends C (2010), Behrends C (2010), Sou YS (2006), Sou YS (2006)	5
ULK1	8	FLCN	1	affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2014), Dunlop EA (2014), Dunlop EA (2014)	3
CDK1	0	MAP1LC3B	1	affinity chromatography technology	Galindo-Moreno M (2017)	1
HDAC1	4	MAP1LC3B	1	genetic interference	Xie HJ (2012)	1
SQSTM1	0	NIPSNAP2	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
GABARAP	0	FLCN	1	affinity chromatography technology, affinity chromatography technology, pull down	Dunlop EA (2014), Dunlop EA (2014), Dunlop EA (2014)	3
GABARAP	0	NIPSNAP2	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Dunlop EA (2014)	2
MAP1LC3B	1	BRD3	6	two hybrid	Vinayagam A (2011)	1
CUL3	17	CLINT1	1	affinity chromatography technology	Bennett EJ (2010)	1
MAP1LC3B	1	RASSF5	2	affinity chromatography technology	Behrends C (2010)	1
PRKCI	1	SQSTM1	0	two hybrid, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology, fluorescent resonance energy transfe	Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Behrends C (2010), Brajenovic M (2004), Lamark T (2003), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Yang JQ (2010), Erdogan E (2006), Milan E (2015), Tsai LC (2015), Tsai LC (2015), Tsai LC (2015)	16
DBN1	1	CLINT1	1	affinity chromatography technology	Hein MY (2015)	1
GABARAPL2	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
TP53	0	UBC	7	affinity chromatography technology, affinity chromatography technology	Ayroldi E (2014), Ke JY (2014)	2
OPTN	1	GABARAP	0	pull down	Wild P (2011)	1
MAP1LC3A	0	SAFB	3	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3B	1	SPAG9	5	two hybrid	Vinayagam A (2011)	1
ATG5	0	CALCOCO2	0	pull down	Fracchiolla D (2016)	1
MAP1LC3B	1	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
ATG3	4	ATG5	0	affinity chromatography technology, pull down, affinity chromatography technology	Behrends C (2010), Qiu Y (2013), Huttlin EL (2017)	3
GABARAPL2	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
KBTBD7	3	PRKCI	1	affinity chromatography technology	Huttlin EL (2017)	1
UBC	7	PRKCI	1	pull down	Zhang X (2017)	1
MAP1LC3B	1	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
SQSTM1	0	TAX1BP1	3	affinity chromatography technology	Mildenberger J (2017)	1
DNMT3B	3	CUL3	17	affinity chromatography technology	Shamay M (2010)	1
SQSTM1	0	NBR1	0	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down	DAgostino C (2011), Lange S (2005), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Erdogan E (2006), Yamashita SI (2014), Nicot AS (2014)	8
CUL3	17	LUC7L2	0	affinity chromatography technology	Bennett EJ (2010)	1
SQSTM1	0	UBC	7	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, unspecified method, x-ray crystallography, affinity chromatography technology, unspecified method, pull down, pull down, pull down, affinity chromatography technology, imaging technique, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, imaging technique, imaging technique, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique	Vinayagam A (2011), Vadlamudi RK (1996), Tanji K (2012), Matsumoto G (2011), Long J (2008), Long J (2008), Najat D (2009), Najat D (2009), Hocking LJ (2004), Boh BK (2011), Long J (2010), Seibenhener ML (2004), Seibenhener ML (2004), Seibenhener ML (2004), Fenner BJ (2009), Nathan JA (2013), Ciani B (2003), Shi J (2013), Goode A (2014), Bish RA (2007), Lu K (2014), Zhou L (2014), Zhou L (2014), Vadlamudi RK (1996), Long J (2008), Cavey JR (2006), Cavey JR (2006), Kirkin V (2009), Nakayasu ES (2013), Nakayasu ES (2013), Lim J (2015), Milan E (2015), Milan E (2015), Ordureau A (2015), Wurzer B (2015), Zhang X (2017), Wang L (2017), Liu X (2017), Peng H (2017), Donohue E (2014), Nibe Y (2017), Nibe Y (2017), Govindaraju VK (2017)	43
CALCOCO2	0	SQSTM1	0	affinity chromatography technology	Cemma M (2011)	1
MAP1LC3B	1	TBC1D17	2	two hybrid	Popovic D (2012)	1
ATG3	4	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
ATG16L1	1	ULK1	8	affinity chromatography technology	Gammoh N (2013)	1
KBTBD7	3	TMEM160	0	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Huttlin EL (2017)	2
UBC	7	HADHA	3	affinity chromatography technology	Matsumoto M (2005)	1
ATG5	0	KEAP1	0	two hybrid	Rolland T (2014)	1
TP53	0	CLTA	1	affinity chromatography technology	Horikawa I (2014)	1
ATG3	4	ATG16L1	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Huttlin EL (2017)	2
CUL3	17	KBTBD6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bennett EJ (2010), Olma MH (2009), Genau HM (2015), Genau HM (2015), Huttlin EL (2017)	5
NEDD4	2	UBC	7	x-ray crystallography, pull down, unspecified method, enzymatic study, x-ray crystallography, enzymatic study, pull down, pull down	Maspero E (2011), Maspero E (2011), Ernst A (2013), Maspero E (2013), Mari S (2014), Mari S (2014), Mari S (2014), Kathman SG (2015)	8
CASP8	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Pan JA (2011), Huang S (2013), Huang S (2013)	3
MAP1LC3B	1	SQSTM1	0	two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, two hybrid, imaging technique, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Kirkin V (2009), Kirkin V (2009), Liang X (2013), Liang X (2013), Novak I (2010), Novak I (2010), Rogov VV (2012), Gao W (2013), Maruyama Y (2014), Maruyama Y (2014), Maruyama Y (2014), Yamashita SI (2014), Wurzer B (2015), Wurzer B (2015), Wurzer B (2015), Sun A (2017), Cohen-Kaplan V (2016), Dou Z (2015), Galindo-Moreno M (2017)	22
MAP1LC3B	1	RAP1GAP	4	two hybrid	Vinayagam A (2011)	1
TBC1D17	2	TAX1BP1	3	two hybrid	Stelzl U (2005)	1
MAP1LC3B	1	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	ATG5	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	SAFB	3	two hybrid	Vinayagam A (2011)	1
ADD1	8	HDAC1	4	affinity chromatography technology	Lee YS (2007)	1
TBC1D5	0	GABARAPL2	0	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
MAP1LC3B	1	CLTA	1	two hybrid	Vinayagam A (2011)	1
UPF2	2	MAP1LC3B	1	two hybrid	Lehner B (2004)	1
MAP1LC3B	1	EPS8	1	two hybrid	Vinayagam A (2011)	1
MAP1LC3A	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
BNIP3	2	HDAC1	4	affinity chromatography technology	Burton TR (2009)	1
TRIM21	0	UBC	7	enzymatic study	McEwan WA (2013)	1
NBR1	0	UBC	7	pull down, pull down, pull down, x-ray crystallography, pull down, pull down, affinity chromatography technology, pull down	Waters S (2009), Kirkin V (2009), Walinda E (2014), Walinda E (2014), Nicot AS (2014), Nakayasu ES (2013), Nakayasu ES (2013), Zhang X (2017)	8
PML	7	SQSTM1	0	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	PML	7	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology	Khan MM (2001), Khan MM (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Wu WS (2001), Morey L (2008), Kuo HY (2013), Kim YE (2015)	10
MAP1LC3B	1	MAP1A	1	affinity chromatography technology	Behrends C (2010)	1
UBC	7	PSMA6	1	affinity chromatography technology	Matsumoto M (2005)	1
DBN1	1	TMOD3	0	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3B	1	LUC7L2	0	two hybrid, two hybrid	Stelzl U (2005), Vinayagam A (2011)	2
GABARAPL2	0	KBTBD7	3	two hybrid, affinity chromatography technology, pull down	Vinayagam A (2011), Genau HM (2015), Genau HM (2015)	3
MAP1LC3A	0	LMNB1	1	pull down	Dou Z (2015)	1
KXD1	1	MAP1LC3B	1	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
GABARAP	0	TRIM21	0	pull down	Kimura T (2015)	1
UBC	7	ATG16L1	1	affinity chromatography technology, pull down, pull down	Fujita N (2013), Fujita N (2013), Ver Heul AM (2013)	3
GORASP2	1	MAP1LC3B	1	two hybrid	Rolland T (2014)	1
GABARAP	0	TAX1BP1	3	pull down	Newman AC (2012)	1
KEAP1	0	TMEM160	0	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	CALCOCO2	0	pull down, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, pull down, imaging technique	Fenner BJ (2009), Fenner BJ (2009), Rolland T (2014), Tumbarello DA (2015), Xie X (2015), Xie X (2015), Xie X (2015), Xie X (2015), Ordureau A (2015), Minowa-Nozawa A (2017)	10
KBTBD7	3	KBTBD6	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Genau HM (2015), Genau HM (2015), Hein MY (2015), Huttlin EL (2017)	5
MAP1LC3B	1	UBC	7	imaging technique	Liu X (2017)	1
TNIP1	1	MAP1LC3B	1	two hybrid	Rolland T (2014)	1
MAP1LC3B	1	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	GABARAPL2	0	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, unspecified method	Okazaki N (2000), Okazaki N (2000), Behrends C (2010), Alemu EA (2012), Alemu EA (2012)	5
MAP1LC3B	1	GABARAPL2	0	pull down	Maruyama Y (2014)	1
UBC	7	TNIP1	1	affinity chromatography technology, x-ray crystallography, pull down, pull down, pull down, pull down	Wagner S (2008), Wagner S (2008), Fenner BJ (2009), Verhelst K (2012), Zhang X (2017), Kliza K (2017)	6
KEAP1	0	CUL3	17	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang XJ (2008), Rachakonda G (2008), Rachakonda G (2008), Nioi P (2007), Chew EH (2007), Chew EH (2007), Zhang DD (2005), Furukawa M (2005), Furukawa M (2005), Furukawa M (2005), Zhang DD (2004), Cullinan SB (2004), Kobayashi A (2004), Kobayashi A (2004), McMahon M (2006), Ichikawa T (2009), Lee DF (2009), Wong DP (2010), Wong DP (2010), Lau A (2010), Lau A (2010), Hur W (2010), Bennett EJ (2010), Yao JW (2012), Li Y (2012), Choo YY (2012), Kansanen E (2011), Kansanen E (2011), Niture SK (2013), Hast BE (2014), Cleasby A (2014), Kaspar JW (2012), Kaspar JW (2012), Su C (2015), Su C (2015), Huo L (2015), Dubiel D (2015), Lo SC (2006), Wu G (2017), Villeneuve NF (2013), Villeneuve NF (2013), Villeneuve NF (2013), Dong T (2016)	43
HDAC1	4	TRIM21	0	affinity chromatography technology	Terhune SS (2010)	1
GABARAPL2	0	KLHL5	0	two hybrid	Vinayagam A (2011)	1
PSMA6	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, imaging technique	Cohen-Kaplan V (2016), Cohen-Kaplan V (2016), Cohen-Kaplan V (2016)	3
ATG16L1	1	ATG5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, x-ray crystallography, biochemical, x-ray crystallography, two hybrid, pull down, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Chen D (2012), Chen D (2012), Ravikumar B (2010), Itoh T (2008), Kristensen AR (2012), Gammoh N (2013), Otomo C (2013), Wan C (2015), Kim JH (2014), Kim JH (2014), Kim JH (2014), Zheng Y (2017)	14
MAP1LC3A	0	CASP8	1	affinity chromatography technology, affinity chromatography technology	Pan JA (2011), Pan JA (2011)	2
MAP1LC3B	1	DBI	0	two hybrid	Vinayagam A (2011)	1
MAP1LC3A	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	CCSER2	4	two hybrid	Vinayagam A (2011)	1
MAP1LC3B	1	TBC1D9B	4	two hybrid	Popovic D (2012)	1
ATG7	2	GABARAP	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006), Dunlop EA (2014)	6
MAP1LC3A	0	FYCO1	6	affinity chromatography technology, unspecified method, affinity chromatography technology	Behrends C (2010), Alemu EA (2012), Wang BS (2013)	3
CALCOCO2	0	GABARAPL2	0	two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Rolland T (2014), Verlhac P (2015)	3
MAP1LC3A	0	UBC	7	biochemical, imaging technique	Fujita N (2013), Govindaraju VK (2017)	2
UBC	7	TBC1D5	0	pull down	Zhang X (2017)	1
MAP1LC3B	1	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	ATG16L1	1	affinity chromatography technology	Behrends C (2010)	1
ATG16L1	1	ATG13	0	affinity chromatography technology	Gammoh N (2013)	1
ATG3	4	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Tanida I (2002), Tanida I (2002), Behrends C (2010), Behrends C (2010), Qiu Y (2013), Huttlin EL (2017)	6
MAP1LC3A	0	ATG3	4	affinity chromatography technology, pull down, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Gao Z (2010), Lee JS (2009), Sou YS (2006), Sou YS (2006), Zhang F (2014)	6
EED	1	MAP1B	5	affinity chromatography technology	Cao Q (2014)	1
MAP1LC3B	1	CUL3	17	pull down	Genau HM (2015)	1
MAP1LC3B	1	ATG4A	1	two hybrid	Novak I (2010)	1
MAP1LC3B	1	DOCK1	14	affinity chromatography technology	Behrends C (2010)	1
CUL3	17	CLTA	1	affinity chromatography technology	Bennett EJ (2010)	1
TNIP1	1	GABARAPL2	0	two hybrid	Rolland T (2014)	1
CASP8	1	CUL3	17	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jin Z (2009), Jin Z (2009), Gonzalvez F (2012), Xu J (2015)	4
KEAP1	0	UBC	7	affinity chromatography technology, affinity chromatography technology, pull down	Gjyshi O (2015), Su C (2015), Zhang X (2017)	3
MAP1LC3B	1	CASP8	1	two hybrid	Vinayagam A (2011)	1
UBC	7	LMNB1	1	affinity chromatography technology	Matsumoto M (2005)	1
TAX1BP1	3	TBK1	1	affinity chromatography technology, affinity chromatography technology	Gao L (2011), Goodwin JM (2017)	2
MAP1LC3B	1	ATG4B	1	two hybrid, affinity chromatography technology, two hybrid, two hybrid, enzymatic study, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Novak I (2010), Tanida I (2004), Gao W (2013)	6
MAP1LC3B	1	TMOD3	0	two hybrid	Vinayagam A (2011)	1
ADRB2	0	MAP1LC3B	1	affinity chromatography technology	Kommaddi RP (2015)	1
DNMT3B	3	HDAC1	4	biochemical, pull down, affinity chromatography technology, pull down, affinity chromatography technology	Geiman TM (2004), Suzuki M (2006), Geiman TM (2004), Geiman TM (2004), Cai Y (2014)	5
RASSF5	2	STK4	1	affinity chromatography technology, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	6
GORASP2	1	CUL3	17	biochemical	Kristensen AR (2012)	1
RASSF5	2	MAP1B	5	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hauri S (2013)	2
CUL3	17	MAP1B	5	affinity chromatography technology	Bennett EJ (2010)	1
CUL3	17	UBC	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Bennett EJ (2010), Olma MH (2009), Bish RA (2007), Wu K (2016)	4
GABARAPL2	0	NBR1	0	affinity chromatography technology, two hybrid, affinity chromatography technology	Behrends C (2010), Kirkin V (2009), Kirkin V (2009)	3
GABARAPL2	0	AAMP	3	two hybrid	Vinayagam A (2011)	1
GABARAP	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	TRIM21	0	pull down	Kimura T (2015)	1
CUL3	17	NIPSNAP2	1	affinity chromatography technology	Bennett EJ (2010)	1
NEDD4	2	TBK1	1	pull down	Persaud A (2009)	1
CDK1	0	LMNB1	1	enzymatic study	Goss VL (1994)	1
TRIM21	0	ULK1	8	affinity chromatography technology	Kimura T (2015)	1
MAP1LC3A	0	RASSF5	2	affinity chromatography technology	Behrends C (2010)	1
OPTN	1	TBC1D17	2	two hybrid, two hybrid, affinity chromatography technology, pull down	Rual JF (2005), Vaibhava V (2012), Vaibhava V (2012), Vaibhava V (2012)	4
MAP1LC3B	1	ADNP	37	two hybrid	Vinayagam A (2011)	1
MAP1LC3A	0	OPTN	1	two hybrid, affinity chromatography technology, pull down, pull down	Wild P (2011), Wild P (2011), Liu Z (2014), Wild P (2011)	4
ARFGAP1	3	SPAG9	5	affinity chromatography technology	Huttlin EL (2017)	1
UBC	7	ATG13	0	affinity chromatography technology	Matsumoto M (2005)	1
EED	1	SNU13	0	affinity chromatography technology	Cao Q (2014)	1
MAP1LC3A	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
PML	7	MAP1LC3B	1	affinity chromatography technology, affinity chromatography technology, imaging technique	He W (2014), He W (2014), He W (2014)	3
MAP1LC3A	0	TRIM21	0	pull down	Kimura T (2015)	1
MAP1LC3B	1	DBN1	1	two hybrid	Vinayagam A (2011)	1
TP53	0	MKRN1	1	affinity chromatography technology	Lee EW (2009)	1
MAP1LC3B	1	RPLP1	0	two hybrid	Vinayagam A (2011)	1
MAP1LC3B	1	SNU13	0	two hybrid	Wang J (2011)	1
LUC7L2	0	MKRN1	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
GABARAPL2	0	NEDD4	2	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	ULK1	8	affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology	Ro SH (2014), Ro SH (2014), Lim J (2015), Lim J (2015)	4
GABARAP	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Behrends C (2010), Kirkin V (2009), Maruyama Y (2014), Dunlop EA (2014), Wurzer B (2015), Wurzer B (2015)	6
SQSTM1	0	GABARAPL2	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid	Rual JF (2005), Behrends C (2010), Vinayagam A (2011), Shvets E (2011), Kirkin V (2009), Kirkin V (2009), Maruyama Y (2014), Rolland T (2014), Yu H (2011)	9
CDK1	0	SQSTM1	0	pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology	Linares JF (2011), Linares JF (2011), Linares JF (2011), Galindo-Moreno M (2017)	4
ATG3	4	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	TBC1D9B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
CASP8	1	OPTN	1	affinity chromatography technology, affinity chromatography technology	Nakazawa S (2016), Nakazawa S (2016)	2
SQSTM1	0	HADHB	4	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
NIPSNAP2	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
PRKCI	1	NIPSNAP1	3	affinity chromatography technology	Brajenovic M (2004)	1
ADRB2	0	HADHB	4	affinity chromatography technology	Roy SJ (2013)	1
CACNA1B	8	UBE2L3	1	affinity chromatography technology, affinity chromatography technology	Gandini MA (2014), Gandini MA (2014)	2
NEDD4	2	STK4	1	pull down	Persaud A (2009)	1
TP53	0	PML	7	affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Kurki S (2003), Kurki S (2003), Fogal V (2000), Fogal V (2000), Guo A (2000), Guo A (2000), Insinga A (2004), Chu Y (2011), Li Q (2011), Li Q (2011), Bernassola F (2005), Yang Q (2013), Yang Q (2013), Catalano A (2004), Chen TC (2014)	15
MAP1LC3B	1	TBC1D5	0	affinity chromatography technology	Popovic D (2012)	1
TNIP1	1	TAX1BP1	3	affinity chromatography technology, affinity chromatography technology, two hybrid	Gao L (2011), Gao L (2011), Rolland T (2014)	3
MAP1LC3B	1	ADD1	8	two hybrid	Vinayagam A (2011)	1
GABARAP	0	NBR1	0	affinity chromatography technology, affinity chromatography technology, pull down	Behrends C (2010), Kirkin V (2009), Nicot AS (2014)	3
MAP1LC3B	1	TP53	0	affinity chromatography technology	Horikawa I (2014)	1
MAP1LC3A	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
KBTBD6	0	GABARAPL2	0	affinity chromatography technology, pull down	Genau HM (2015), Genau HM (2015)	2
TP53	0	STK4	1	imaging technique	Chen TC (2014)	1
GABARAP	0	LMNB1	1	pull down	Dou Z (2015)	1
MAP1LC3B	1	NEDD4	2	affinity chromatography technology, pull down, pull down, x-ray crystallography	Sun A (2017), Sun A (2017), Qiu Y (2017), Qiu Y (2017)	4
MAP1LC3A	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, biochemical, imaging technique, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, pull down, pull down, affinity chromatography technology	Shvets E (2008), Shvets E (2008), Behrends C (2010), Gao Z (2010), Pan JA (2011), Pankiv S (2007), Pankiv S (2007), Shvets E (2011), Tung YT (2010), Bjorkoy G (2005), Kirkin V (2009), Lim J (2011), Lim J (2011), Pan JA (2012), Lee DY (2013), Wang BS (2013), Wang BS (2013), Sansanwal P (2012), Shi J (2013), Fujita N (2013), Chen X (2014), Liu XD (2014), Noda NN (2008), Noda NN (2008), Matsuzawa Y (2015), Matsuzawa Y (2015), Rui YN (2015), Rui YN (2015), Ciuffa R (2015), Wang N (2013), Hua F (2015), Rui YN (2015), Cha-Molstad H (2015), Paul S (2012), Puvirajesinghe TM (2016), Wang L (2017), Cha-Molstad H (2017), Peng H (2017), Lee Y (2017)	39
KEAP1	0	SQSTM1	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Sowa ME (2009), Jain A (2010), Jain A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Inami Y (2011), Fan W (2010), Copple IM (2010), Copple IM (2010), Wright T (2013), Tanji K (2013), Ichimura Y (2013), Ichimura Y (2013), Ichimura Y (2013), Hast BE (2014), Hast BE (2014), Lerner C (2013), Rolland T (2014), Gjyshi O (2015), Bakkar N (2015), Milan E (2015), Park S (2016), Ge W (2017), Mildenberger J (2017), Lu K (2017), Lee Y (2017)	30
MAP1LC3A	0	KEAP1	0	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Fan W (2010)	2
ULK1	8	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	CALCOCO2	0	affinity chromatography technology	Verlhac P (2015)	1
PRKCI	1	NIPSNAP2	1	affinity chromatography technology	Brajenovic M (2004)	1
UBC	7	TAX1BP1	3	pull down, x-ray crystallography, pull down, pull down	Fenner BJ (2009), Tumbarello DA (2015), Tumbarello DA (2015), Zhang X (2017)	4
SQSTM1	0	ATG4B	1	affinity chromatography technology	Tanji K (2012)	1
MAP1LC3B	1	FUNDC1	0	two hybrid	Rolland T (2014)	1
TBC1D25	3	GABARAPL2	0	two hybrid, two hybrid, pull down, pull down, affinity chromatography technology	Itoh T (2011), Itoh T (2011), Itoh T (2011), Hirano S (2016), Huttlin EL (2017)	5
EED	1	SAFB	3	affinity chromatography technology	Cao Q (2014)	1
MAP1LC3A	0	NBR1	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology	DAgostino C (2011), Waters S (2009), Waters S (2009), Kirkin V (2009)	4
OPTN	1	TNIP1	1	two hybrid, two hybrid, two hybrid, affinity chromatography technology	Wang J (2011), Rolland T (2014), Yu H (2011), Huttlin EL (2017)	4
SEM1	0	UBC	7	affinity chromatography technology	Besche HC (2014)	1
GABARAPL2	0	TBC1D9	3	two hybrid	Popovic D (2012)	1
NIPSNAP2	1	NIPSNAP1	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hein MY (2015)	2
GABARAPL2	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
SMARCB1	1	HDAC1	4	biochemical	Sif S (2001)	1
MAP1LC3B	1	MRFAP1	1	two hybrid	Vinayagam A (2011)	1
SQSTM1	0	CUL3	17	imaging technique, affinity chromatography technology	Lau A (2010), Mori Y (2015)	2
MAP1LC3A	0	STK4	1	affinity chromatography technology	Behrends C (2010)	1
SEM1	0	PSMA6	1	affinity chromatography technology	Wei SJ (2008)	1
CUL3	17	SAFB	3	affinity chromatography technology	Bennett EJ (2010)	1
KEAP1	0	NIPSNAP2	1	affinity chromatography technology	Sowa ME (2009)	1
MAP1LC3B	1	SMARCB1	1	two hybrid	Vinayagam A (2011)	1
UBE2L3	1	NEDD4	2	enzymatic study, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down, pull down, pull down, pull down, pull down, pull down	Anan T (1998), Bruce MC (2008), Wiesner S (2007), Vina-Vilaseca A (2010), Anindya R (2007), Lin Q (2010), Chung S (2011), Tofaris GK (2011), Han L (2013), Persaud A (2014), Uchiki T (2009), Miyazaki K (2003), Zhang W (2016), Zhang X (2017)	14
MAP1LC3B	1	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
TP53	0	SQSTM1	0	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Di Lello P (2006), Horikawa I (2014), Kang JH (2016), Kang JH (2016)	4
ATG5	0	OPTN	1	pull down, affinity chromatography technology, pull down	Fracchiolla D (2016), Bansal M (2018), Bansal M (2018)	3
HADHA	3	HADHB	4	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
CACNA1B	8	MAP1B	5	affinity chromatography technology	Gandini MA (2014)	1
UBC	7	UBE2L3	1	affinity chromatography technology	Bish RA (2007)	1
ULK1	8	ATG13	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2011), Nazio F (2013), Nazio F (2013), Hosokawa N (2009), Li J (2015), Dunlop EA (2014), Rui YN (2015)	7
MAP1LC3A	0	ATG4B	1	affinity chromatography technology, x-ray crystallography, enzymatic study, enzymatic study	Behrends C (2010), Satoo K (2009), Betin VM (2009), Betin VM (2009)	4
MAP1LC3B	1	CLINT1	1	affinity chromatography technology	Behrends C (2010)	1
GABARAP	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
CUL3	17	RPLP1	0	affinity chromatography technology	Bennett EJ (2010)	1
ATG3	4	GABARAP	0	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Sou YS (2006), Sou YS (2006), Huttlin EL (2017)	5
MAP1LC3B	1	AAMP	3	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	TRIM21	0	pull down	Kimura T (2015)	1
MAP1LC3A	0	TBC1D9	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
TBK1	1	SQSTM1	0	enzymatic study, enzymatic study	Matsumoto G (2015), Richter B (2016)	2
GABARAP	0	NIPSNAP1	3	affinity chromatography technology	Dunlop EA (2014)	1
OPTN	1	GABARAPL2	0	pull down	Wild P (2011)	1
MAP1LC3A	0	TBC1D17	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
TBC1D9	3	TBC1D9B	4	affinity chromatography technology	Huttlin EL (2017)	1
OPTN	1	TBK1	1	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, enzymatic study, imaging technique, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology	Li S (2011), Li S (2011), Li S (2011), Mankouri J (2010), Mankouri J (2010), Mankouri J (2010), Morton S (2008), Morton S (2008), Freischmidt A (2015), Freischmidt A (2015), Heo JM (2015), Heo JM (2015), Genin P (2015), Genin P (2015), Richter B (2016), Richter B (2016), Richter B (2016), Pourcelot M (2016)	18
TAX1BP1	3	OPTN	1	affinity chromatography technology, affinity chromatography technology	Journo C (2009), Journo C (2009)	2
GABARAP	0	CUL3	17	pull down	Genau HM (2015)	1
EED	1	LMNB1	1	affinity chromatography technology	Cao Q (2014)	1
MAP1LC3A	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
KBTBD6	0	MAP1LC3B	1	affinity chromatography technology, pull down, unspecified method, x-ray crystallography	Genau HM (2015), Genau HM (2015), Genau HM (2015), Genau HM (2015)	4
MAP1LC3B	1	DNMT3B	3	two hybrid	Vinayagam A (2011)	1
ULK1	8	GABARAP	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology	Ewing RM (2007), Okazaki N (2000), Okazaki N (2000), Alemu EA (2012), Alemu EA (2012), Dunlop EA (2014)	6
MAP1LC3A	0	TBC1D5	0	affinity chromatography technology, pull down, pull down	Popovic D (2012), Popovic D (2012), Popovic D (2012)	3
STK4	1	MAP1B	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Varjosalo M (2013), Hauri S (2013)	3
PSMA6	1	MAP1LC3B	1	affinity chromatography technology	Cohen-Kaplan V (2016)	1
CDK1	0	PML	7	enzymatic study	Yuan WC (2011)	1
MAP1LC3B	1	TAF7	0	two hybrid	Vinayagam A (2011)	1
UBC	7	TMEM160	0	pull down	Nathan JA (2013)	1
MAP1LC3B	1	TBK1	1	pull down	Wild P (2011)	1
GABARAPL2	0	ARFGAP1	3	two hybrid	Rolland T (2014)	1
MAP1LC3B	1	STK3	1	affinity chromatography technology	Behrends C (2010)	1
OPTN	1	UBC	7	affinity chromatography technology, pull down, pull down, pull down, two hybrid, pull down, pull down, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down, pull down, pull down, pull down	Wild P (2011), Fenner BJ (2009), Zhu G (2007), Zhu G (2007), Wagner S (2008), Gleason CE (2011), Nagabhushana A (2011), Korac J (2012), Wild P (2011), Tumbarello DA (2015), Heo JM (2015), Ordureau A (2015), Richter B (2016), Richter B (2016), Nakazawa S (2016), Zhang X (2017), Kliza K (2017), Bansal M (2018)	18
MAP1LC3B	1	MYBL2	2	two hybrid	Vinayagam A (2011)	1
PSMA6	1	CDK1	0	affinity chromatography technology	Sharma SS (2011)	1
OPTN	1	SQSTM1	0	affinity chromatography technology, pull down	Liu Z (2014), Liu Z (2014)	2
TRIM21	0	UBE2L3	1	pull down	Wada K (2006)	1
MAP1LC3B	1	CACNA1B	8	affinity chromatography technology, affinity chromatography technology	Gandini MA (2014), Gandini MA (2014)	2
CDK1	0	TP53	0	enzymatic study, affinity chromatography technology	Luciani MG (2000), Ababneh M (2001)	2
MAP1LC3B	1	KLHL5	0	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
TP53	0	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, imaging technique, affinity chromatography technology, affinity chromatography technology, imaging technique	Ito A (2002), Wang C (2005), Dohi Y (2008), Jin W (2008), Lei Q (2006), Wu Y (2001), Wu Y (2001), Luo J (2000), Juan LJ (2000), Juan LJ (2000), Juan LJ (2000), Murphy M (1999), Insinga A (2004), Sun JM (2007), Yu XY (2010), Sinha S (2010), Sinha S (2010), Li Y (2012), Di Agostino S (2006), Pavithra L (2009), Pavithra L (2009), Luo J (2000), Chen TC (2014), Park EK (2015), Park EK (2015), Park EK (2015)	26
TP53	0	HADHB	4	affinity chromatography technology	Horikawa I (2014)	1
MAP1LC3A	0	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
STK3	1	STK4	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, bioid, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, fluorescent resonance energy transfe	Behrends C (2010), Behrends C (2010), Couzens AL (2013), Couzens AL (2013), Couzens AL (2013), Couzens AL (2013), Varjosalo M (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013), Wan C (2015), Ivanov AA (2017)	12
ADRB2	0	RPLP1	0	affinity chromatography technology	Roy SJ (2013)	1
MAP1LC3A	0	MAP1A	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	ARFGAP1	3	two hybrid	Vinayagam A (2011)	1
UBC	7	HADHB	4	affinity chromatography technology	Matsumoto M (2005)	1
MAP1LC3A	0	CLINT1	1	affinity chromatography technology	Behrends C (2010)	1
EED	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	van der Vlag J (1999), van der Vlag J (1999), van der Vlag J (1999), Hein MY (2015)	4
MAP1LC3B	1	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
ADRB2	0	LMNB1	1	affinity chromatography technology	Roy SJ (2013)	1
ATG7	2	GABARAPL2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down	Behrends C (2010), Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006)	5
MAP1LC3B	1	KBTBD7	3	two hybrid, two hybrid, affinity chromatography technology, pull down, unspecified method	Stelzl U (2005), Vinayagam A (2011), Genau HM (2015), Genau HM (2015), Genau HM (2015)	5
MAP1LC3A	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
GABARAP	0	NEDD4	2	affinity chromatography technology	Behrends C (2010)	1
EED	1	DNMT3B	3	affinity chromatography technology, imaging technique, affinity chromatography technology	Vire E (2006), Vire E (2006), OHagan HM (2011)	3
MYBL2	2	CLTA	1	affinity chromatography technology	Yamauchi T (2008)	1
CASP8	1	UBC	7	pull down	Bellail AC (2012)	1
STK3	1	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
TP53	0	DBN1	1	affinity chromatography technology	Horikawa I (2014)	1
MAP1LC3B	1	TBC1D9	3	two hybrid	Popovic D (2012)	1
MAP1LC3B	1	UBE2L3	1	two hybrid, affinity chromatography technology	Gandini MA (2014), Gandini MA (2014)	2
UPF2	2	MAP1A	1	two hybrid	Lehner B (2004)	1
TAX1BP1	3	GABARAPL2	0	two hybrid	Tumbarello DA (2015)	1
SQSTM1	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
TNIP1	1	MAP1LC3A	0	two hybrid	Rolland T (2014)	1
MAP1LC3A	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	RETREG2	2	two hybrid	Vinayagam A (2011)	1
TBK1	1	CALCOCO2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology	Thurston TL (2009), Li S (2011), Li S (2011), Li S (2011), Li S (2011), Huttlin EL (2017)	6
ATG4A	1	GABARAPL2	0	enzymatic study	Scherz-Shouval R (2003)	1
CUL3	17	DCTN1	6	affinity chromatography technology	Bennett EJ (2010)	1
KBTBD6	0	GABARAP	0	affinity chromatography technology, pull down, x-ray crystallography	Genau HM (2015), Genau HM (2015), Genau HM (2015)	3
DBN1	1	CLTA	1	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3A	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
ADRB2	0	UBC	7	affinity chromatography technology	Roy SJ (2013)	1
GABARAP	0	ATG4B	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Behrends C (2010), Dunlop EA (2014)	4
GABARAP	0	MAPK15	1	pull down, affinity chromatography technology	Colecchia D (2012), Colecchia D (2012)	2
STK3	1	MAP1B	5	affinity chromatography technology, affinity chromatography technology	Varjosalo M (2013), Hauri S (2013)	2
CASP8	1	TP53	0	affinity chromatography technology, affinity chromatography technology	Yao Z (2007), Yao Z (2007)	2
KBTBD7	3	CUL3	17	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Bennett EJ (2010), Genau HM (2015), Genau HM (2015), Huttlin EL (2017)	5
CALCOCO2	0	TAX1BP1	3	affinity chromatography technology, two hybrid	Morriswood B (2007), Morriswood B (2007)	2
NIPSNAP1	3	DBI	0	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	RIPOR1	8	two hybrid	Vinayagam A (2011)	1
GABARAPL2	0	ATG4B	1	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, enzymatic study	Ewing RM (2007), Stelzl U (2005), Behrends C (2010), Behrends C (2010), Vinayagam A (2011), Betin VM (2009)	6
GABARAP	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
ATG5	0	SQSTM1	0	pull down, affinity chromatography technology	Fracchiolla D (2016), Fracchiolla D (2016)	2
MAP1LC3B	1	SEM1	0	two hybrid	Vinayagam A (2011)	1
MAP1LC3B	1	MAPK15	1	pull down, affinity chromatography technology	Colecchia D (2012), Colecchia D (2012)	2
MAP1LC3B	1	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
NBR1	0	MAP1LC3B	1	affinity chromatography technology, pull down	Kirkin V (2009), Nicot AS (2014)	2
KXD1	1	MAP1LC3A	0	two hybrid	Rolland T (2014)	1
MAP1LC3B	1	OPTN	1	imaging technique, unspecified method, pull down, x-ray crystallography, affinity chromatography technology, pull down	Wild P (2011), Wild P (2011), Rogov VV (2013), Rogov VV (2013), Rogov VV (2013), Wild P (2011)	6
GABARAP	0	CALCOCO2	0	affinity chromatography technology	Verlhac P (2015)	1
SQSTM1	0	ATG7	2	affinity chromatography technology	Tanji K (2012)	1
SQSTM1	0	TRIM21	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Kim JY (2009), Kim JY (2009), Kimura T (2015), Milan E (2015), Pan JA (2016), Pan JA (2016)	6
MAP1LC3B	1	MKRN1	1	two hybrid	Vinayagam A (2011)	1
MAP1LC3A	0	ATG7	2	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006), Wan W (2017)	5
GABARAPL2	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	FYCO1	6	affinity chromatography technology, unspecified method	Behrends C (2010), Alemu EA (2012)	2
KBTBD7	3	GABARAP	0	affinity chromatography technology, pull down	Genau HM (2015), Genau HM (2015)	2
MAP1LC3A	0	STK3	1	affinity chromatography technology	Behrends C (2010)	1
OPTN	1	ATG16L1	1	affinity chromatography technology, pull down	Bansal M (2018), Bansal M (2018)	2
SAFB	3	TP53	0	affinity chromatography technology, affinity chromatography technology	Peidis P (2011), Peidis P (2011)	2
MAP1LC3B	1	MAP1LC3A	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	BNIP3L	1	affinity chromatography technology, affinity chromatography technology, pull down	Novak I (2010), Novak I (2010), Novak I (2010)	3
MAP1LC3B	1	TAX1BP1	3	pull down, two hybrid	Newman AC (2012), Tumbarello DA (2015)	2
MAP1LC3B	1	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
GABARAPL2	0	ATG13	0	two hybrid, affinity chromatography technology, unspecified method	Vinayagam A (2011), Alemu EA (2012), Alemu EA (2012)	3
MAP1LC3A	0	ATG13	0	affinity chromatography technology, two hybrid	Alemu EA (2012), Fujita N (2013)	2
MAP1LC3A	0	TBC1D25	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2