PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000564797	[[10420290, 10420369], [10437857, 10438047], [10479008, 10479110], [10508430, 10508469], [10513437, 10513477]]	None
ENST00000562527	[[10479911, 10479979], [10481000, 10481147], [10481234, 10481351], [10508430, 10508469], [10513437, 10513480], [10522724, 10522873], [10524467, 10524529]]	[[10524477, 10524529]]
ENST00000396560	[[10479911, 10479979], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577495]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10576106]]
ENST00000396559	[[10479911, 10479979], [10513437, 10513480], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10577495]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10575756]]
ENST00000561932	[[10479914, 10479979], [10481000, 10481147], [10481234, 10481341], [10508430, 10508469], [10513437, 10513480], [10522724, 10522861]]	None
ENST00000562102	[[10479914, 10479979], [10508430, 10508469], [10513437, 10513480], [10522724, 10522873], [10524467, 10524729]]	[[10524477, 10524729]]
ENST00000543967	[[10479915, 10479979], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10576343]]	[[10565982, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10576106]]
ENST00000569939	[[10479917, 10479979], [10481000, 10481147], [10481234, 10481351], [10522724, 10522873], [10524467, 10524556]]	[[10524477, 10524556]]
ENST00000569900	[[10479917, 10479979], [10481000, 10481147], [10481234, 10481351], [10524467, 10524700]]	[[10524477, 10524700]]
ENST00000535850	[[10479917, 10479979], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10575975]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10567335, 10567391], [10567779, 10567807]]
ENST00000566316	[[10479914, 10479979], [10481000, 10481147], [10481234, 10481598]]	None
ENST00000562396	[[10479917, 10481598]]	None
ENST00000570163	[[10480948, 10481147], [10481234, 10481594]]	None
ENST00000568027	[[10522757, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577495]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10565966, 10565969]]
ENST00000356427	[[10524451, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577494]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10576106]]
ENST00000324570	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10577494]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10575756]]
ENST00000565616	[[10547878, 10548196], [10551176, 10551468]]	None
ENST00000565450	[[10565780, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574820]]	None
NR_045816	[[10479911, 10479979], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577495]]	None
NM_024997	[[10479911, 10479979], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577495]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10576106]]
NM_001256160	[[10479911, 10479979], [10513437, 10513480], [10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10577495]]	[[10524477, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10551228, 10551386], [10565966, 10566040], [10567335, 10567391], [10574735, 10574821], [10575692, 10575756]]
NR_045815	[[10522724, 10522873], [10524467, 10525312], [10527381, 10527506], [10531957, 10532092], [10534220, 10534319], [10565966, 10566040], [10567335, 10567391], [10567779, 10567846], [10574735, 10574821], [10575692, 10577495]]	None

Promoter

Chrom	Start	End	Description
chr16	10479876	10479887	CAGE_peak_2_at_ATF7IP2_5end
chr16	10479906	10479925	CAGE_peak_1_at_ATF7IP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I010385	10385404	10387736	2.07	[{'connected_gene': 'ATF7IP2', 'score': 574.36}, {'connected_gene': 'PRM2', 'score': 12.13}, {'connected_gene': 'HNRNPCP4', 'score': 10.55}, {'connected_gene': 'PRM1', 'score': 9.94}, {'connected_gene': 'GC16P010405', 'score': 0.37}, {'connected_gene': 'ENSG00000260756', 'score': 0.29}]
chr16	GH16I010356	10356475	10358441	0.9	[{'connected_gene': 'ATF7IP2', 'score': 29.04}, {'connected_gene': 'EMP2', 'score': 4.56}, {'connected_gene': 'ENSG00000260756', 'score': 0.77}, {'connected_gene': 'GC16P010405', 'score': 0.25}]
chr16	GH16I010312	10312592	10313744	0.91	[{'connected_gene': 'ATF7IP2', 'score': 0.39}, {'connected_gene': 'LOC105371078', 'score': 0.21}]
chr16	GH16I010321	10321568	10322381	0.59	[{'connected_gene': 'ATF7IP2', 'score': 0.77}, {'connected_gene': 'LOC105371078', 'score': 0.2}]
chr16	GH16I010296	10296659	10299333	1.31	[{'connected_gene': 'ATF7IP2', 'score': 0.31}, {'connected_gene': 'LOC105371078', 'score': 0.25}]
chr16	GH16I010322	10322595	10324452	0.91	[{'connected_gene': 'ATF7IP2', 'score': 0.77}, {'connected_gene': 'LOC105371078', 'score': 0.19}]
chr16	GH16I010812	10812567	10812979	0.84	[{'connected_gene': 'ATF7IP2', 'score': 5.61}, {'connected_gene': 'NUBP1', 'score': 4.41}, {'connected_gene': 'TVP23A', 'score': 0.44}, {'connected_gene': 'PIR44837', 'score': 0.23}, {'connected_gene': 'GC16P010485', 'score': 0.05}]
chr16	GH16I010479	10479784	10479933	0.31	[{'connected_gene': 'ATF7IP2', 'score': 11.65}, {'connected_gene': 'GC16P010485', 'score': 0.44}, {'connected_gene': 'ENSG00000279662', 'score': 0.29}]
chr16	GH16I010361	10361638	10363553	1.24	[{'connected_gene': 'ATF7IP2', 'score': 34.39}, {'connected_gene': 'ENSG00000260756', 'score': 0.44}, {'connected_gene': 'GC16P010405', 'score': 0.26}]
chr16	GH16I010329	10329104	10330573	0.97	[{'connected_gene': 'ATF7IP2', 'score': 0.77}, {'connected_gene': 'ENSG00000260756', 'score': 0.34}]
chr16	GH16I010327	10327904	10328800	1.04	[{'connected_gene': 'ATF7IP2', 'score': 550.77}, {'connected_gene': 'ENSG00000260756', 'score': 0.34}]
chr16	GH16I010334	10334261	10334774	0.59	[{'connected_gene': 'ATF7IP2', 'score': 0.44}, {'connected_gene': 'ENSG00000260756', 'score': 0.37}]
chr16	GH16I010126	10126498	10127481	0.43	[{'connected_gene': 'GRIN2A', 'score': 33.84}, {'connected_gene': 'ATF7IP2', 'score': 1.52}, {'connected_gene': 'GC16M010114', 'score': 0.39}, {'connected_gene': 'GC16P010176', 'score': 0.25}]
chr16	GH16I010331	10331959	10333748	0.74	[{'connected_gene': 'CLEC16A', 'score': 5.09}, {'connected_gene': 'ATF7IP2', 'score': 0.44}, {'connected_gene': 'ENSG00000260756', 'score': 0.37}]
chr16	GH16I010537	10537064	10537213	0.74	[{'connected_gene': 'EMP2', 'score': 6.2}, {'connected_gene': 'ATF7IP2', 'score': 5.05}, {'connected_gene': 'ENSG00000256013', 'score': 0.44}, {'connected_gene': 'ENSG00000260310', 'score': 0.26}, {'connected_gene': 'GC16P010485', 'score': 0.23}]
chr16	GH16I010455	10455336	10455414	0.22	[{'connected_gene': 'EMP2', 'score': 3.84}, {'connected_gene': 'ENSG00000279662', 'score': 0.44}, {'connected_gene': 'GC16P010485', 'score': 0.29}, {'connected_gene': 'ATF7IP2', 'score': 0.13}]
chr16	GH16I010341	10341521	10342520	0.67	[{'connected_gene': 'EMP2', 'score': 6.16}, {'connected_gene': 'ENSG00000260756', 'score': 0.39}, {'connected_gene': 'ATF7IP2', 'score': 0.37}]
chr16	GH16I010280	10280154	10280503	0.22	[{'connected_gene': 'LOC105371078', 'score': 0.31}, {'connected_gene': 'ATF7IP2', 'score': 0.25}]
chr16	GH16I010275	10275004	10276285	0.56	[{'connected_gene': 'LOC105371078', 'score': 0.34}, {'connected_gene': 'ATF7IP2', 'score': 0.23}]
chr16	GH16I010920	10920684	10925183	1.12	[{'connected_gene': 'ENSG00000262222', 'score': 7.35}, {'connected_gene': 'ATF7IP2', 'score': 4.35}, {'connected_gene': 'GC16M010929', 'score': 0.44}, {'connected_gene': 'PIR39040', 'score': 0.44}, {'connected_gene': 'GC16P010903', 'score': 0.34}, {'connected_gene': 'CIITA', 'score': 0.22}, {'connected_gene': 'GC16P010485', 'score': 0.05}]
chr16	GH16I010590	10590914	10593878	0.31	[{'connected_gene': 'ENSG00000256013', 'score': 10.98}, {'connected_gene': 'ATF7IP2', 'score': 4.69}, {'connected_gene': 'EMP2', 'score': 0.39}, {'connected_gene': 'LOC105371079', 'score': 0.15}, {'connected_gene': 'GC16P010485', 'score': 0.14}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010306	10306362	10306748	0.82	[{'connected_gene': 'ENSG00000256013', 'score': 10.96}, {'connected_gene': 'ATF7IP2', 'score': 0.37}, {'connected_gene': 'LOC105371078', 'score': 0.23}]
chr16	GH16I010308	10308167	10309727	0.86	[{'connected_gene': 'ENSG00000256013', 'score': 11.16}, {'connected_gene': 'ATF7IP2', 'score': 0.37}, {'connected_gene': 'LOC105371078', 'score': 0.22}]
chr16	GH16I010300	10300813	10301572	0.79	[{'connected_gene': 'ENSG00000256013', 'score': 10.96}, {'connected_gene': 'ATF7IP2', 'score': 0.31}, {'connected_gene': 'LOC105371078', 'score': 0.25}]
chr16	GH16I010318	10318481	10319098	0.93	[{'connected_gene': 'ENSG00000256013', 'score': 10.38}, {'connected_gene': 'ATF7IP2', 'score': 0.44}, {'connected_gene': 'LOC105371078', 'score': 0.2}]
chr16	GH16I010405	10405044	10405933	0.88	[{'connected_gene': 'GC16P010405', 'score': 550.77}, {'connected_gene': 'ATF7IP2', 'score': 24.1}, {'connected_gene': 'ENSG00000260756', 'score': 0.23}]
chr16	GH16I010485	10485241	10486525	0.8	[{'connected_gene': 'GC16P010485', 'score': 550.77}, {'connected_gene': 'ATF7IP2', 'score': 11.31}, {'connected_gene': 'GC16P010496', 'score': 0.39}]
chr16	GH16I010339	10339695	10340630	0.7	[{'connected_gene': 'ENSG00000260756', 'score': 0.39}, {'connected_gene': 'ATF7IP2', 'score': 0.39}]
chr16	GH16I010343	10343244	10343393	0.85	[{'connected_gene': 'ENSG00000260756', 'score': 0.44}, {'connected_gene': 'ATF7IP2', 'score': 0.37}]
chr16	GH16I010382	10382073	10383023	1.06	[{'connected_gene': 'GC16P010405', 'score': 0.34}, {'connected_gene': 'ENSG00000260756', 'score': 0.31}, {'connected_gene': 'ATF7IP2', 'score': 0.22}]
chr16	GH16I010390	10390479	10390894	0.64	[{'connected_gene': 'GC16P010405', 'score': 0.37}, {'connected_gene': 'ENSG00000260756', 'score': 0.28}, {'connected_gene': 'ATF7IP2', 'score': 0.21}]
chr16	GH16I010342	10342578	10342923	0.2	[{'connected_gene': 'ENSG00000260756', 'score': 0.39}, {'connected_gene': 'ATF7IP2', 'score': 0.37}]
chr16	GH16I010256	10256491	10258453	1.13	[{'connected_gene': 'ENSG00000256013', 'score': 10.42}, {'connected_gene': 'GRIN2A', 'score': 10.05}, {'connected_gene': 'LOC105371078', 'score': 0.77}, {'connected_gene': 'ATF7IP2', 'score': 0.2}]
chr16	GH16I010575	10575710	10581896	2.44	[{'connected_gene': 'ENSG00000260310', 'score': 560.33}, {'connected_gene': 'EMP2', 'score': 553.45}, {'connected_gene': 'SOCS1', 'score': 14.87}, {'connected_gene': 'HNRNPCP4', 'score': 14.29}, {'connected_gene': 'ENSG00000256013', 'score': 11.63}, {'connected_gene': 'NUBP1', 'score': 10.39}, {'connected_gene': 'LOC400499', 'score': 5.3}, {'connected_gene': 'ATF7IP2', 'score': 1.3}, {'connected_gene': 'GC16P010485', 'score': 0.16}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010497	10497749	10498088	0.49	[{'connected_gene': 'GC16P010496', 'score': 550.77}, {'connected_gene': 'RNU6-633P', 'score': 550.77}, {'connected_gene': 'ATF7IP2', 'score': 10.13}, {'connected_gene': 'GC16P010485', 'score': 0.39}, {'connected_gene': 'LINC01290', 'score': 0.29}]