PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000465409	[[104183001, 104183329], [104183413, 104183474], [104183554, 104184061]]	None
ENST00000369937	[[104183001, 104183329], [104183413, 104183474], [104183554, 104183616], [104183752, 104183935], [104184020, 104184151], [104184255, 104184317], [104184405, 104184549], [104184871, 104184955], [104192282, 104192418]]	[[104183182, 104183329], [104183413, 104183474], [104183554, 104183616], [104183752, 104183935], [104184020, 104184151], [104184255, 104184317], [104184405, 104184549], [104184871, 104184945]]
ENST00000486762	[[104183765, 104183935], [104184020, 104184151], [104184255, 104184317], [104184405, 104184549], [104192282, 104192325]]	None
ENST00000477994	[[104183787, 104184151], [104184255, 104184317], [104184405, 104184549], [104184871, 104184955], [104192282, 104192341]]	None
NM_024040	[[104183001, 104183329], [104183413, 104183474], [104183554, 104183616], [104183752, 104183935], [104184020, 104184151], [104184255, 104184317], [104184405, 104184549], [104184871, 104184955], [104192282, 104192423]]	[[104183182, 104183329], [104183413, 104183474], [104183554, 104183616], [104183752, 104183935], [104184020, 104184151], [104184255, 104184317], [104184405, 104184549], [104184871, 104184945]]

Promoter

Chrom	Start	End	Description
chr10	104184955	104184965	CAGE_peak_4_at_CUEDC2_5end
chr10	104192322	104192379	CAGE_peak_1_at_CUEDC2_5end
chr10	104192405	104192440	CAGE_peak_2_at_CUEDC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I102325	102325959	102329333	0.74	[{'connected_gene': 'GBF1', 'score': 11.48}, {'connected_gene': 'PITX3', 'score': 11.47}, {'connected_gene': 'ELOVL3', 'score': 11.22}, {'connected_gene': 'NFKB2', 'score': 10.76}, {'connected_gene': 'RPARP-AS1', 'score': 5.66}, {'connected_gene': 'BORCS7', 'score': 4.94}, {'connected_gene': 'CUEDC2', 'score': 4.78}, {'connected_gene': 'KCNIP2', 'score': 4.77}, {'connected_gene': 'SFXN2', 'score': 3.65}, {'connected_gene': 'GC10P102289', 'score': 0.28}]
chr10	GH10I102449	102449169	102457191	1.59	[{'connected_gene': 'C10orf95', 'score': 558.66}, {'connected_gene': 'RPARP-AS1', 'score': 14.36}, {'connected_gene': 'PPRC1', 'score': 14.09}, {'connected_gene': 'PCGF6', 'score': 13.14}, {'connected_gene': 'PDCD11', 'score': 11.44}, {'connected_gene': 'GBF1', 'score': 11.33}, {'connected_gene': 'MFSD13A', 'score': 10.57}, {'connected_gene': 'SFXN2', 'score': 7.64}, {'connected_gene': 'CYP17A1-AS1', 'score': 5.23}, {'connected_gene': 'CUEDC2', 'score': 4.98}, {'connected_gene': 'GC10M102448', 'score': 0.2}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102484	102484304	102486305	0.2	[{'connected_gene': 'MFSD13A', 'score': 23.26}, {'connected_gene': 'C10orf95', 'score': 11.76}, {'connected_gene': 'RNU6-43P', 'score': 11.41}, {'connected_gene': 'NFKB2', 'score': 11.39}, {'connected_gene': 'MIR146B', 'score': 11.22}, {'connected_gene': 'CUEDC2', 'score': 11.21}, {'connected_gene': 'PSD', 'score': 11.1}, {'connected_gene': 'FBXL15', 'score': 11.09}, {'connected_gene': 'ELOVL3', 'score': 10.28}, {'connected_gene': 'ENSG00000273262', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.37}, {'connected_gene': 'GC10M102448', 'score': 0.28}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102462	102462732	102464370	0.86	[{'connected_gene': 'MFSD13A', 'score': 40.71}, {'connected_gene': 'MIR146B', 'score': 11.54}, {'connected_gene': 'CUEDC2', 'score': 11.52}, {'connected_gene': 'FBXL15', 'score': 11.45}, {'connected_gene': 'PSD', 'score': 11.45}, {'connected_gene': 'SUFU', 'score': 11.02}, {'connected_gene': 'RNU6-43P', 'score': 10.87}, {'connected_gene': 'NFKB2', 'score': 10.63}, {'connected_gene': 'ELOVL3', 'score': 9.66}, {'connected_gene': 'GC10P102468', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.28}, {'connected_gene': 'GC10M102448', 'score': 0.22}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102478	102478758	102479696	0.93	[{'connected_gene': 'MFSD13A', 'score': 34.93}, {'connected_gene': 'SUFU', 'score': 11.69}, {'connected_gene': 'MIR146B', 'score': 11.59}, {'connected_gene': 'CUEDC2', 'score': 11.58}, {'connected_gene': 'RNU6-43P', 'score': 11.27}, {'connected_gene': 'NFKB2', 'score': 11.2}, {'connected_gene': 'ELOVL3', 'score': 10.29}, {'connected_gene': 'ENSG00000273262', 'score': 0.77}, {'connected_gene': 'PIR54211', 'score': 0.44}, {'connected_gene': 'GC10P102474', 'score': 0.44}, {'connected_gene': 'ACTR1A', 'score': 0.34}, {'connected_gene': 'GC10M102448', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.08}, {'connected_gene': 'GC10M102382', 'score': 0.08}]
chr10	GH10I102625	102625402	102636039	1.59	[{'connected_gene': 'MFSD13A', 'score': 29.82}, {'connected_gene': 'SFXN2', 'score': 8.85}, {'connected_gene': 'ACTR1A', 'score': 5.31}, {'connected_gene': 'CUEDC2', 'score': 4.86}, {'connected_gene': 'GBF1', 'score': 1.58}, {'connected_gene': 'TRIM8', 'score': 0.39}, {'connected_gene': 'RNU6-43P', 'score': 0.28}, {'connected_gene': 'GC10M102383', 'score': 0.21}, {'connected_gene': 'GC10M102382', 'score': 0.21}, {'connected_gene': 'SUFU', 'score': 0.13}]
chr10	GH10I102595	102595093	102606248	1.65	[{'connected_gene': 'MFSD13A', 'score': 41.23}, {'connected_gene': 'SFXN2', 'score': 17.2}, {'connected_gene': 'ACTR1A', 'score': 12.81}, {'connected_gene': 'SUFU', 'score': 11.52}, {'connected_gene': 'C10orf95', 'score': 10.62}, {'connected_gene': 'PSD', 'score': 10.53}, {'connected_gene': 'FBXL15', 'score': 10.52}, {'connected_gene': 'CUEDC2', 'score': 10.52}, {'connected_gene': 'MIR146B', 'score': 10.51}, {'connected_gene': 'ARL3', 'score': 10.49}, {'connected_gene': 'WBP1L', 'score': 1.53}, {'connected_gene': 'RNU6-43P', 'score': 0.44}, {'connected_gene': 'TRIM8', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.16}, {'connected_gene': 'GC10M102382', 'score': 0.16}]
chr10	GH10I102282	102282115	102283715	0.31	[{'connected_gene': 'PSD', 'score': 15.61}, {'connected_gene': 'GBF1', 'score': 11.3}, {'connected_gene': 'PITX3', 'score': 11.29}, {'connected_gene': 'ELOVL3', 'score': 10.66}, {'connected_gene': 'FBXL15', 'score': 9.8}, {'connected_gene': 'C10orf95', 'score': 9.68}, {'connected_gene': 'MFSD13A', 'score': 9.67}, {'connected_gene': 'CUEDC2', 'score': 4.74}, {'connected_gene': 'GC10P102286', 'score': 0.77}]
chr10	GH10I102418	102418391	102423500	2.32	[{'connected_gene': 'FBXL15', 'score': 556.03}, {'connected_gene': 'PSD', 'score': 550.77}, {'connected_gene': 'PPRC1', 'score': 37.08}, {'connected_gene': 'PDCD11', 'score': 29.48}, {'connected_gene': 'PCGF6', 'score': 14.25}, {'connected_gene': 'GBF1', 'score': 14.03}, {'connected_gene': 'SFXN2', 'score': 13.69}, {'connected_gene': 'NOLC1', 'score': 10.62}, {'connected_gene': 'TAF5', 'score': 10.14}, {'connected_gene': 'RPEL1', 'score': 10.08}, {'connected_gene': 'HPS6', 'score': 8.83}, {'connected_gene': 'PITX3', 'score': 5.23}, {'connected_gene': 'CUEDC2', 'score': 0.39}, {'connected_gene': 'GC10M102383', 'score': 0.06}, {'connected_gene': 'GC10M102382', 'score': 0.06}]
chr10	GH10I102431	102431457	102436937	2.35	[{'connected_gene': 'CUEDC2', 'score': 550.77}, {'connected_gene': 'HPS6', 'score': 25.1}, {'connected_gene': 'PPRC1', 'score': 23.01}, {'connected_gene': 'LDB1', 'score': 21.56}, {'connected_gene': 'PDCD11', 'score': 17.56}, {'connected_gene': 'TAF5', 'score': 13.74}, {'connected_gene': 'SUFU', 'score': 11.31}, {'connected_gene': 'GBF1', 'score': 11.15}, {'connected_gene': 'PCGF6', 'score': 10.86}, {'connected_gene': 'RPARP-AS1', 'score': 6.89}, {'connected_gene': 'PITX3', 'score': 5.98}, {'connected_gene': 'C10orf95', 'score': 4.76}, {'connected_gene': 'C10orf76', 'score': 4.6}, {'connected_gene': 'BORCS7', 'score': 4.57}, {'connected_gene': 'MIR146B', 'score': 0.77}, {'connected_gene': 'GC10P102438', 'score': 0.77}, {'connected_gene': 'GC10P102437', 'score': 0.77}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102427	102427953	102428012	0.5	[{'connected_gene': 'CUEDC2', 'score': 550.77}, {'connected_gene': 'PSD', 'score': 0.44}, {'connected_gene': 'GC10M102383', 'score': 0.06}, {'connected_gene': 'GC10M102382', 'score': 0.06}]
chr10	GH10I102261	102261275	102264101	0.4	[{'connected_gene': 'PITX3', 'score': 13.37}, {'connected_gene': 'ELOVL3', 'score': 10.81}, {'connected_gene': 'HPS6', 'score': 6.75}, {'connected_gene': 'PSD', 'score': 5.31}, {'connected_gene': 'C10orf95', 'score': 4.94}, {'connected_gene': 'CUEDC2', 'score': 4.33}, {'connected_gene': 'NFKB2', 'score': 4.0}, {'connected_gene': 'GBF1', 'score': 0.37}, {'connected_gene': 'GC10P102286', 'score': 0.34}]
chr10	GH10I102467	102467548	102470200	0.87	[{'connected_gene': 'GC10P102468', 'score': 550.77}, {'connected_gene': 'MFSD13A', 'score': 39.59}, {'connected_gene': 'MIR146B', 'score': 12.06}, {'connected_gene': 'CUEDC2', 'score': 12.04}, {'connected_gene': 'SUFU', 'score': 11.7}, {'connected_gene': 'NFKB2', 'score': 11.63}, {'connected_gene': 'RNU6-43P', 'score': 11.53}, {'connected_gene': 'FBXL15', 'score': 11.09}, {'connected_gene': 'PSD', 'score': 11.09}, {'connected_gene': 'ELOVL3', 'score': 10.14}, {'connected_gene': 'RPARP-AS1', 'score': 5.24}, {'connected_gene': 'GC10P102474', 'score': 0.77}, {'connected_gene': 'PIR54211', 'score': 0.77}, {'connected_gene': 'ACTR1A', 'score': 0.29}, {'connected_gene': 'GC10M102448', 'score': 0.23}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]
chr10	GH10I102473	102473524	102473673	0.2	[{'connected_gene': 'PIR54211', 'score': 550.77}, {'connected_gene': 'GC10P102474', 'score': 550.77}, {'connected_gene': 'SUFU', 'score': 11.67}, {'connected_gene': 'MIR146B', 'score': 11.61}, {'connected_gene': 'CUEDC2', 'score': 11.59}, {'connected_gene': 'RNU6-43P', 'score': 11.26}, {'connected_gene': 'NFKB2', 'score': 11.22}, {'connected_gene': 'ELOVL3', 'score': 10.29}, {'connected_gene': 'GC10P102468', 'score': 0.44}, {'connected_gene': 'MFSD13A', 'score': 0.39}, {'connected_gene': 'ACTR1A', 'score': 0.31}, {'connected_gene': 'GC10M102448', 'score': 0.25}, {'connected_gene': 'GC10M102383', 'score': 0.07}, {'connected_gene': 'GC10M102382', 'score': 0.07}]