Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000260010 [[154622651, 154626851]] [[154624059, 154626414]]
NM_001318793 [[154605403, 154605489], [154609068, 154609199], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318790 [[154605403, 154605489], [154609053, 154609199], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318791 [[154605403, 154605512], [154609087, 154609199], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318796 [[154605403, 154605512], [154609068, 154609140], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318787 [[154605403, 154605512], [154609068, 154609140], [154623378, 154623662], [154624043, 154627412]] [[154624059, 154626414]]
NM_003264 [[154605403, 154605512], [154609068, 154609199], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318795 [[154605403, 154605512], [154609053, 154609140], [154624043, 154627412]] [[154624059, 154626414]]
NM_001318789 [[154605403, 154605512], [154609053, 154609199], [154624043, 154627412]] [[154624059, 154626414]]
Promoter
Chrom Start End Description
chr4 154605395 154605471 CAGE_peak_1_at_TLR2_5end
chr4 154605474 154605492 CAGE_peak_2_at_TLR2_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr4 GH04I153649 153649787 153650175 0.85 [{'connected_gene': 'TLR2', 'score': 31.7}, {'connected_gene': 'WDR45P1', 'score': 0.44}, {'connected_gene': 'LOC100419170', 'score': 0.44}, {'connected_gene': 'PIR44715', 'score': 0.44}]
chr4 GH04I153676 153676278 153677818 1.31 [{'connected_gene': 'TLR2', 'score': 21.07}, {'connected_gene': 'RNF175', 'score': 5.19}, {'connected_gene': 'WDR45P1', 'score': 0.37}, {'connected_gene': 'LOC100419170', 'score': 0.28}]
chr4 GH04I153806 153806595 153806846 0.44 [{'connected_gene': 'TLR2', 'score': 11.93}, {'connected_gene': 'RNF175', 'score': 10.85}, {'connected_gene': 'LOC105377499', 'score': 4.94}, {'connected_gene': 'GC04P153793', 'score': 0.39}, {'connected_gene': 'LOC101927947', 'score': 0.08}]
chr4 GH04I153678 153678817 153680786 0.31 [{'connected_gene': 'TLR2', 'score': 17.17}, {'connected_gene': 'RNF175', 'score': 15.8}, {'connected_gene': 'LOC105377499', 'score': 11.81}, {'connected_gene': 'LOC100419170', 'score': 5.39}, {'connected_gene': 'WDR45P1', 'score': 0.34}]
chr4 GH04I153683 153683401 153686600 1.03 [{'connected_gene': 'TLR2', 'score': 569.78}, {'connected_gene': 'RNF175', 'score': 15.92}, {'connected_gene': 'LOC105377499', 'score': 0.31}]
chr4 GH04I153731 153731349 153731498 0.52 [{'connected_gene': 'TLR2', 'score': 13.85}, {'connected_gene': 'RNF175', 'score': 11.15}, {'connected_gene': 'GC04M153689', 'score': 0.77}, {'connected_gene': 'LOC105377499', 'score': 0.37}]
chr4 GH04I153701 153701486 153701545 0.7 [{'connected_gene': 'TLR2', 'score': 550.37}, {'connected_gene': 'RNF175', 'score': 10.59}, {'connected_gene': 'LOC105377499', 'score': 0.39}, {'connected_gene': 'GC04M153689', 'score': 0.31}]
chr4 GH04I153708 153708978 153710323 0.31 [{'connected_gene': 'TLR2', 'score': 12.35}, {'connected_gene': 'RNF175', 'score': 10.84}, {'connected_gene': 'LOC105377499', 'score': 0.77}, {'connected_gene': 'GC04M153689', 'score': 0.37}]
chr4 GH04I153650 153650622 153653436 1.17 [{'connected_gene': 'TLR2', 'score': 44.61}, {'connected_gene': 'RNF175', 'score': 9.23}, {'connected_gene': 'LOC100419170', 'score': 4.89}, {'connected_gene': 'WDR45P1', 'score': 0.44}, {'connected_gene': 'PIR44715', 'score': 0.39}]
chr4 GH04I153747 153747896 153749294 0.72 [{'connected_gene': 'TLR2', 'score': 13.52}, {'connected_gene': 'LOC105377499', 'score': 12.01}, {'connected_gene': 'RNF175', 'score': 5.24}, {'connected_gene': 'GC04M153689', 'score': 0.34}]
chr4 GH04I153748 153747401 153747800 0.4 [{'connected_gene': 'TLR2', 'score': 13.52}, {'connected_gene': 'LOC105377499', 'score': 12.03}, {'connected_gene': 'RNF175', 'score': 0.39}, {'connected_gene': 'GC04M153689', 'score': 0.34}]
chr4 GH04I153654 153654786 153657000 1.3 [{'connected_gene': 'TLR2', 'score': 31.87}, {'connected_gene': 'LOC100419170', 'score': 4.88}, {'connected_gene': 'RNF175', 'score': 4.61}, {'connected_gene': 'WDR45P1', 'score': 0.77}, {'connected_gene': 'PIR44715', 'score': 0.37}]
chr4 GH04I153787 153787328 153791800 1.76 [{'connected_gene': 'SFRP2', 'score': 552.28}, {'connected_gene': 'TLR2', 'score': 12.26}, {'connected_gene': 'GC04P153793', 'score': 0.77}, {'connected_gene': 'GC04P153787', 'score': 0.77}]
chr4 GH04I153657 153657555 153657875 0.46 [{'connected_gene': 'WDR45P1', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 10.57}, {'connected_gene': 'RNF175', 'score': 4.55}, {'connected_gene': 'LOC100419170', 'score': 0.37}, {'connected_gene': 'PIR44715', 'score': 0.37}]
chr4 GH04I153659 153659314 153659690 0.5 [{'connected_gene': 'WDR45P1', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.22}, {'connected_gene': 'LOC100419170', 'score': 0.37}]
chr4 GH04I153643 153643400 153643800 1.12 [{'connected_gene': 'RNF175', 'score': 10.42}, {'connected_gene': 'MND1', 'score': 10.34}, {'connected_gene': 'TLR2', 'score': 4.79}, {'connected_gene': 'LOC100419170', 'score': 0.77}, {'connected_gene': 'PIR44715', 'score': 0.77}, {'connected_gene': 'WDR45P1', 'score': 0.39}]
chr4 GH04I153696 153696179 153697437 0.2 [{'connected_gene': 'RNF175', 'score': 10.63}, {'connected_gene': 'TLR2', 'score': 6.92}, {'connected_gene': 'LOC105377499', 'score': 0.37}, {'connected_gene': 'GC04M153689', 'score': 0.29}]
chr4 GH04I153660 153660002 153662399 1.08 [{'connected_gene': 'RNF175', 'score': 15.5}, {'connected_gene': 'TLR2', 'score': 9.89}, {'connected_gene': 'LOC100419170', 'score': 5.3}, {'connected_gene': 'WDR45P1', 'score': 0.77}]
chr4 GH04I153627 153627195 153627329 0.44 [{'connected_gene': 'RNF175', 'score': 10.38}, {'connected_gene': 'TMEM131L', 'score': 7.64}, {'connected_gene': 'TLR2', 'score': 4.77}, {'connected_gene': 'PIR43440', 'score': 0.44}, {'connected_gene': 'LOC105377498', 'score': 0.18}]
chr4 GH04I153705 153705801 153706800 0.72 [{'connected_gene': 'RNF175', 'score': 10.81}, {'connected_gene': 'LOC105377499', 'score': 0.44}, {'connected_gene': 'GC04M153689', 'score': 0.34}, {'connected_gene': 'TLR2', 'score': 0.34}]
chr4 GH04I153432 153432509 153434886 1.62 [{'connected_gene': 'TMEM131L', 'score': 13.04}, {'connected_gene': 'MND1', 'score': 11.33}, {'connected_gene': 'TLR2', 'score': 5.89}, {'connected_gene': 'GC04P153424', 'score': 0.44}]
chr4 GH04I153641 153641643 153641872 0.69 [{'connected_gene': 'LOC100419170', 'score': 550.77}, {'connected_gene': 'PIR44715', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.28}, {'connected_gene': 'RNF175', 'score': 10.53}, {'connected_gene': 'WDR45P1', 'score': 0.37}]
chr4 GH04I153792 153792201 153793289 1.03 [{'connected_gene': 'GC04P153793', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.82}, {'connected_gene': 'RNF175', 'score': 11.05}, {'connected_gene': 'SFRP2', 'score': 0.77}]
chr4 GH04I153642 153642017 153642360 0.45 [{'connected_gene': 'PIR44715', 'score': 550.77}, {'connected_gene': 'RNF175', 'score': 10.53}, {'connected_gene': 'TLR2', 'score': 7.74}, {'connected_gene': 'LOC100419170', 'score': 0.77}, {'connected_gene': 'WDR45P1', 'score': 0.37}]