PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000260010	[[154622651, 154626851]]	[[154624059, 154626414]]
NM_001318793	[[154605403, 154605489], [154609068, 154609199], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318790	[[154605403, 154605489], [154609053, 154609199], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318791	[[154605403, 154605512], [154609087, 154609199], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318796	[[154605403, 154605512], [154609068, 154609140], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318787	[[154605403, 154605512], [154609068, 154609140], [154623378, 154623662], [154624043, 154627412]]	[[154624059, 154626414]]
NM_003264	[[154605403, 154605512], [154609068, 154609199], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318795	[[154605403, 154605512], [154609053, 154609140], [154624043, 154627412]]	[[154624059, 154626414]]
NM_001318789	[[154605403, 154605512], [154609053, 154609199], [154624043, 154627412]]	[[154624059, 154626414]]

Promoter

Chrom	Start	End	Description
chr4	154605395	154605471	CAGE_peak_1_at_TLR2_5end
chr4	154605474	154605492	CAGE_peak_2_at_TLR2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I153649	153649787	153650175	0.85	[{'connected_gene': 'TLR2', 'score': 31.7}, {'connected_gene': 'WDR45P1', 'score': 0.44}, {'connected_gene': 'LOC100419170', 'score': 0.44}, {'connected_gene': 'PIR44715', 'score': 0.44}]
chr4	GH04I153676	153676278	153677818	1.31	[{'connected_gene': 'TLR2', 'score': 21.07}, {'connected_gene': 'RNF175', 'score': 5.19}, {'connected_gene': 'WDR45P1', 'score': 0.37}, {'connected_gene': 'LOC100419170', 'score': 0.28}]
chr4	GH04I153806	153806595	153806846	0.44	[{'connected_gene': 'TLR2', 'score': 11.93}, {'connected_gene': 'RNF175', 'score': 10.85}, {'connected_gene': 'LOC105377499', 'score': 4.94}, {'connected_gene': 'GC04P153793', 'score': 0.39}, {'connected_gene': 'LOC101927947', 'score': 0.08}]
chr4	GH04I153678	153678817	153680786	0.31	[{'connected_gene': 'TLR2', 'score': 17.17}, {'connected_gene': 'RNF175', 'score': 15.8}, {'connected_gene': 'LOC105377499', 'score': 11.81}, {'connected_gene': 'LOC100419170', 'score': 5.39}, {'connected_gene': 'WDR45P1', 'score': 0.34}]
chr4	GH04I153683	153683401	153686600	1.03	[{'connected_gene': 'TLR2', 'score': 569.78}, {'connected_gene': 'RNF175', 'score': 15.92}, {'connected_gene': 'LOC105377499', 'score': 0.31}]
chr4	GH04I153731	153731349	153731498	0.52	[{'connected_gene': 'TLR2', 'score': 13.85}, {'connected_gene': 'RNF175', 'score': 11.15}, {'connected_gene': 'GC04M153689', 'score': 0.77}, {'connected_gene': 'LOC105377499', 'score': 0.37}]
chr4	GH04I153701	153701486	153701545	0.7	[{'connected_gene': 'TLR2', 'score': 550.37}, {'connected_gene': 'RNF175', 'score': 10.59}, {'connected_gene': 'LOC105377499', 'score': 0.39}, {'connected_gene': 'GC04M153689', 'score': 0.31}]
chr4	GH04I153708	153708978	153710323	0.31	[{'connected_gene': 'TLR2', 'score': 12.35}, {'connected_gene': 'RNF175', 'score': 10.84}, {'connected_gene': 'LOC105377499', 'score': 0.77}, {'connected_gene': 'GC04M153689', 'score': 0.37}]
chr4	GH04I153650	153650622	153653436	1.17	[{'connected_gene': 'TLR2', 'score': 44.61}, {'connected_gene': 'RNF175', 'score': 9.23}, {'connected_gene': 'LOC100419170', 'score': 4.89}, {'connected_gene': 'WDR45P1', 'score': 0.44}, {'connected_gene': 'PIR44715', 'score': 0.39}]
chr4	GH04I153747	153747896	153749294	0.72	[{'connected_gene': 'TLR2', 'score': 13.52}, {'connected_gene': 'LOC105377499', 'score': 12.01}, {'connected_gene': 'RNF175', 'score': 5.24}, {'connected_gene': 'GC04M153689', 'score': 0.34}]
chr4	GH04I153748	153747401	153747800	0.4	[{'connected_gene': 'TLR2', 'score': 13.52}, {'connected_gene': 'LOC105377499', 'score': 12.03}, {'connected_gene': 'RNF175', 'score': 0.39}, {'connected_gene': 'GC04M153689', 'score': 0.34}]
chr4	GH04I153654	153654786	153657000	1.3	[{'connected_gene': 'TLR2', 'score': 31.87}, {'connected_gene': 'LOC100419170', 'score': 4.88}, {'connected_gene': 'RNF175', 'score': 4.61}, {'connected_gene': 'WDR45P1', 'score': 0.77}, {'connected_gene': 'PIR44715', 'score': 0.37}]
chr4	GH04I153787	153787328	153791800	1.76	[{'connected_gene': 'SFRP2', 'score': 552.28}, {'connected_gene': 'TLR2', 'score': 12.26}, {'connected_gene': 'GC04P153793', 'score': 0.77}, {'connected_gene': 'GC04P153787', 'score': 0.77}]
chr4	GH04I153657	153657555	153657875	0.46	[{'connected_gene': 'WDR45P1', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 10.57}, {'connected_gene': 'RNF175', 'score': 4.55}, {'connected_gene': 'LOC100419170', 'score': 0.37}, {'connected_gene': 'PIR44715', 'score': 0.37}]
chr4	GH04I153659	153659314	153659690	0.5	[{'connected_gene': 'WDR45P1', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.22}, {'connected_gene': 'LOC100419170', 'score': 0.37}]
chr4	GH04I153643	153643400	153643800	1.12	[{'connected_gene': 'RNF175', 'score': 10.42}, {'connected_gene': 'MND1', 'score': 10.34}, {'connected_gene': 'TLR2', 'score': 4.79}, {'connected_gene': 'LOC100419170', 'score': 0.77}, {'connected_gene': 'PIR44715', 'score': 0.77}, {'connected_gene': 'WDR45P1', 'score': 0.39}]
chr4	GH04I153696	153696179	153697437	0.2	[{'connected_gene': 'RNF175', 'score': 10.63}, {'connected_gene': 'TLR2', 'score': 6.92}, {'connected_gene': 'LOC105377499', 'score': 0.37}, {'connected_gene': 'GC04M153689', 'score': 0.29}]
chr4	GH04I153660	153660002	153662399	1.08	[{'connected_gene': 'RNF175', 'score': 15.5}, {'connected_gene': 'TLR2', 'score': 9.89}, {'connected_gene': 'LOC100419170', 'score': 5.3}, {'connected_gene': 'WDR45P1', 'score': 0.77}]
chr4	GH04I153627	153627195	153627329	0.44	[{'connected_gene': 'RNF175', 'score': 10.38}, {'connected_gene': 'TMEM131L', 'score': 7.64}, {'connected_gene': 'TLR2', 'score': 4.77}, {'connected_gene': 'PIR43440', 'score': 0.44}, {'connected_gene': 'LOC105377498', 'score': 0.18}]
chr4	GH04I153705	153705801	153706800	0.72	[{'connected_gene': 'RNF175', 'score': 10.81}, {'connected_gene': 'LOC105377499', 'score': 0.44}, {'connected_gene': 'GC04M153689', 'score': 0.34}, {'connected_gene': 'TLR2', 'score': 0.34}]
chr4	GH04I153432	153432509	153434886	1.62	[{'connected_gene': 'TMEM131L', 'score': 13.04}, {'connected_gene': 'MND1', 'score': 11.33}, {'connected_gene': 'TLR2', 'score': 5.89}, {'connected_gene': 'GC04P153424', 'score': 0.44}]
chr4	GH04I153641	153641643	153641872	0.69	[{'connected_gene': 'LOC100419170', 'score': 550.77}, {'connected_gene': 'PIR44715', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.28}, {'connected_gene': 'RNF175', 'score': 10.53}, {'connected_gene': 'WDR45P1', 'score': 0.37}]
chr4	GH04I153792	153792201	153793289	1.03	[{'connected_gene': 'GC04P153793', 'score': 550.77}, {'connected_gene': 'TLR2', 'score': 11.82}, {'connected_gene': 'RNF175', 'score': 11.05}, {'connected_gene': 'SFRP2', 'score': 0.77}]
chr4	GH04I153642	153642017	153642360	0.45	[{'connected_gene': 'PIR44715', 'score': 550.77}, {'connected_gene': 'RNF175', 'score': 10.53}, {'connected_gene': 'TLR2', 'score': 7.74}, {'connected_gene': 'LOC100419170', 'score': 0.77}, {'connected_gene': 'WDR45P1', 'score': 0.37}]