PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368732	[[153362507, 153362719], [153362870, 153363033], [153363332, 153363452]]	[[153362578, 153362719], [153362870, 153363011]]
ENST00000368733	[[153362507, 153362719], [153362870, 153363033], [153363516, 153363664]]	[[153362578, 153362719], [153362870, 153363011]]
ENST00000477801	[[153362679, 153362719], [153362870, 153363547]]	None
NM_001319201	[[153362507, 153362719], [153362870, 153363033], [153363332, 153363452]]	[[153362578, 153362719], [153362870, 153363011]]
NM_001319196	[[153362507, 153362719], [153362870, 153363050], [153363516, 153363664]]	[[153362578, 153362719], [153362870, 153363050], [153363516, 153363549]]
NM_001319197	[[153362507, 153362719], [153362870, 153363047], [153363516, 153363664]]	[[153362578, 153362719], [153362870, 153363047], [153363516, 153363549]]
NM_002964	[[153362507, 153362719], [153362870, 153363033], [153363516, 153363664]]	[[153362578, 153362719], [153362870, 153363011]]
NM_001319198	[[153362507, 153362719], [153362870, 153363033], [153394993, 153395059]]	[[153362578, 153362719], [153362870, 153363033], [153394993, 153394995]]

Promoter

Chrom	Start	End	Description
chr1	153362896	153362903	CAGE_peak_5_at_S100A8_5end
chr1	153362906	153362947	CAGE_peak_3_at_S100A8_5end
chr1	153362968	153363033	CAGE_peak_2_at_S100A8_5end
chr1	153363539	153363557	CAGE_peak_1_at_S100A8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I153355	153355424	153362837	1.69	[{'connected_gene': 'S100A9', 'score': 550.77}, {'connected_gene': 'ENSG00000224784', 'score': 11.21}, {'connected_gene': 'S100A8', 'score': 11.15}, {'connected_gene': 'RNU6-160P', 'score': 10.51}, {'connected_gene': 'S100A14', 'score': 9.25}, {'connected_gene': 'S100A16', 'score': 9.25}, {'connected_gene': 'S100A12', 'score': 7.67}, {'connected_gene': 'PGLYRP4', 'score': 6.09}, {'connected_gene': 'LOC101928009', 'score': 4.19}]
chr1	GH01I153394	153394001	153394400	0.73	[{'connected_gene': 'S100A8', 'score': 16.0}, {'connected_gene': 'S100A12', 'score': 9.02}, {'connected_gene': 'S100A9', 'score': 4.83}, {'connected_gene': 'ENSG00000224784', 'score': 0.77}, {'connected_gene': 'LAPTM4BP1', 'score': 0.39}]
chr1	GH01I153384	153384801	153392600	1.67	[{'connected_gene': 'S100A8', 'score': 572.65}, {'connected_gene': 'S100A12', 'score': 25.34}, {'connected_gene': 'S100A9', 'score': 23.34}, {'connected_gene': 'PGLYRP4', 'score': 10.81}, {'connected_gene': 'RNU6-160P', 'score': 10.38}, {'connected_gene': 'S100A7L2', 'score': 1.64}, {'connected_gene': 'S100A4', 'score': 1.56}, {'connected_gene': 'LAPTM4BP1', 'score': 0.44}, {'connected_gene': 'ENSG00000224784', 'score': 0.44}]
chr1	GH01I153363	153363805	153368067	1.38	[{'connected_gene': 'S100A8', 'score': 24.73}, {'connected_gene': 'S100A12', 'score': 16.84}, {'connected_gene': 'ENSG00000224784', 'score': 11.72}, {'connected_gene': 'RNU6-160P', 'score': 10.5}, {'connected_gene': 'S100A9', 'score': 9.73}]
chr1	GH01I153552	153552973	153554763	1.07	[{'connected_gene': 'S100A3', 'score': 13.91}, {'connected_gene': 'CHTOP', 'score': 12.52}, {'connected_gene': 'S100A13', 'score': 12.35}, {'connected_gene': 'S100A16', 'score': 10.84}, {'connected_gene': 'S100A14', 'score': 10.83}, {'connected_gene': 'S100A1', 'score': 10.64}, {'connected_gene': 'INTS3', 'score': 10.05}, {'connected_gene': 'ENSG00000233222', 'score': 10.04}, {'connected_gene': 'ENSG00000243613', 'score': 10.04}, {'connected_gene': 'ILF2', 'score': 9.85}, {'connected_gene': 'S100A9', 'score': 8.74}, {'connected_gene': 'S100A12', 'score': 6.49}, {'connected_gene': 'S100A4', 'score': 3.78}, {'connected_gene': 'S100A8', 'score': 2.44}, {'connected_gene': 'S100A2', 'score': 0.39}]
chr1	GH01I153416	153416473	153416532	0.5	[{'connected_gene': 'S100A7A', 'score': 550.77}, {'connected_gene': 'S100A8', 'score': 0.44}, {'connected_gene': 'ENSG00000224784', 'score': 0.37}]
chr1	GH01I153404	153404825	153404894	0.74	[{'connected_gene': 'CHTOP', 'score': 5.53}, {'connected_gene': 'ENSG00000224784', 'score': 0.44}, {'connected_gene': 'S100A7A', 'score': 0.39}, {'connected_gene': 'S100A8', 'score': 0.37}]