PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358935	[[94050919, 94051286], [94070891, 94071094], [94100429, 94100560], [94109105, 94109289], [94109427, 94109594], [94110847, 94113721]]	[[94051251, 94051286], [94070891, 94071094], [94100429, 94100560], [94109105, 94109289], [94109427, 94109594], [94110847, 94110964]]
ENST00000492319	[[94109237, 94109289], [94109427, 94110055]]	None
ENST00000467521	[[94068234, 94068360], [94070891, 94071094], [94100429, 94100560], [94109105, 94109289], [94109427, 94109532]]	None
ENST00000462465	[[94093263, 94093382], [94100429, 94100560], [94109105, 94109180]]	None
NM_017824	[[94050919, 94051286], [94070891, 94071094], [94100429, 94100560], [94109105, 94109289], [94109427, 94109594], [94110847, 94113721]]	[[94051251, 94051286], [94070891, 94071094], [94100429, 94100560], [94109105, 94109289], [94109427, 94109594], [94110847, 94110964]]

Promoter

Chrom	Start	End	Description
chr10	94050913	94050965	CAGE_peak_1_at_MARCH5_5end
chr10	94050966	94050971	CAGE_peak_5_at_MARCH5_5end
chr10	94051039	94051050	CAGE_peak_3_at_MARCH5_5end
chr10	94051055	94051085	CAGE_peak_2_at_MARCH5_5end
chr10	94051095	94051111	CAGE_peak_4_at_MARCH5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I092754	92754239	92758466	1.94	[{'connected_gene': 'BTAF1', 'score': 43.86}, {'connected_gene': 'RPL17P34', 'score': 31.97}, {'connected_gene': 'PDE6C', 'score': 12.09}, {'connected_gene': 'TNKS2', 'score': 9.78}, {'connected_gene': 'MARK2P9', 'score': 6.0}, {'connected_gene': 'EXOC6', 'score': 2.84}, {'connected_gene': 'MARCH5', 'score': 2.78}, {'connected_gene': 'HHEX', 'score': 2.63}, {'connected_gene': 'GC10P092747', 'score': 0.44}, {'connected_gene': 'GC10M092781', 'score': 0.31}]
chr10	GH10I092314	92314302	92314651	0.22	[{'connected_gene': 'BTAF1', 'score': 6.9}, {'connected_gene': 'GC10P092304', 'score': 0.44}, {'connected_gene': 'GC10P092335', 'score': 0.37}, {'connected_gene': 'MARCH5', 'score': 0.34}, {'connected_gene': 'GC10M092263', 'score': 0.14}]
chr10	GH10I092115	92115001	92115400	0.31	[{'connected_gene': 'BTAF1', 'score': 19.8}, {'connected_gene': 'CPEB3', 'score': 18.67}, {'connected_gene': 'ENSG00000252993', 'score': 11.11}, {'connected_gene': 'MARCH5', 'score': 10.72}, {'connected_gene': 'EXOC6', 'score': 4.3}, {'connected_gene': 'SDHCP2', 'score': 0.77}, {'connected_gene': 'GC10M092115', 'score': 0.39}]
chr10	GH10I092087	92087601	92088201	1.12	[{'connected_gene': 'BTAF1', 'score': 22.31}, {'connected_gene': 'CPEB3', 'score': 11.88}, {'connected_gene': 'MARCH5', 'score': 11.88}, {'connected_gene': 'ENSG00000252993', 'score': 0.39}, {'connected_gene': 'SDHCP2', 'score': 0.29}]
chr10	GH10I092833	92833437	92835699	1.69	[{'connected_gene': 'EXOC6', 'score': 550.77}, {'connected_gene': 'KIF11', 'score': 10.75}, {'connected_gene': 'IDE', 'score': 10.75}, {'connected_gene': 'MARCH5', 'score': 3.92}, {'connected_gene': 'GC10M092798', 'score': 0.31}]
chr10	GH10I092590	92590278	92595748	2.45	[{'connected_gene': 'KIF11', 'score': 555.88}, {'connected_gene': 'GC10P092594', 'score': 550.77}, {'connected_gene': 'GC10P092595', 'score': 550.77}, {'connected_gene': 'BTAF1', 'score': 37.29}, {'connected_gene': 'TNKS2', 'score': 24.39}, {'connected_gene': 'RPL17P34', 'score': 14.12}, {'connected_gene': 'MYOF', 'score': 10.55}, {'connected_gene': 'EIF2S2P3', 'score': 7.39}, {'connected_gene': 'TNKS2-AS1', 'score': 4.31}, {'connected_gene': 'CPEB3', 'score': 2.15}, {'connected_gene': 'MARCH5', 'score': 1.26}, {'connected_gene': 'GC10M092594', 'score': 0.77}, {'connected_gene': 'IDE', 'score': 0.37}]
chr10	GH10I092327	92327128	92331102	0.77	[{'connected_gene': 'CPEB3', 'score': 10.51}, {'connected_gene': 'BTAF1', 'score': 7.81}, {'connected_gene': 'GC10P092335', 'score': 0.44}, {'connected_gene': 'GC10P092304', 'score': 0.34}, {'connected_gene': 'MARCH5', 'score': 0.28}, {'connected_gene': 'GC10M092263', 'score': 0.15}]
chr10	GH10I092238	92238001	92242010	2	[{'connected_gene': 'CPEB3', 'score': 579.03}, {'connected_gene': 'MARCH5', 'score': 12.08}, {'connected_gene': 'BTAF1', 'score': 7.63}, {'connected_gene': 'NHP2P1', 'score': 0.34}, {'connected_gene': 'ENSG00000199881', 'score': 0.29}]
chr10	GH10I092289	92289979	92293299	2.07	[{'connected_gene': 'CPEB3', 'score': 565.17}, {'connected_gene': 'MARCH5', 'score': 550.77}, {'connected_gene': 'NHP2P1', 'score': 4.32}, {'connected_gene': 'BTAF1', 'score': 4.0}, {'connected_gene': 'GC10P092304', 'score': 0.39}, {'connected_gene': 'GC10M092263', 'score': 0.12}]
chr10	GH10I092114	92114324	92114493	0.83	[{'connected_gene': 'CPEB3', 'score': 19.09}, {'connected_gene': 'ENSG00000252993', 'score': 11.11}, {'connected_gene': 'MARCH5', 'score': 10.72}, {'connected_gene': 'NHP2P1', 'score': 4.45}, {'connected_gene': 'SDHCP2', 'score': 0.77}]
chr10	GH10I092116	92114044	92114193	0.54	[{'connected_gene': 'CPEB3', 'score': 19.09}, {'connected_gene': 'ENSG00000252993', 'score': 11.11}, {'connected_gene': 'MARCH5', 'score': 10.72}, {'connected_gene': 'SDHCP2', 'score': 0.77}]
chr10	GH10I092100	92100875	92102589	1.14	[{'connected_gene': 'CPEB3', 'score': 15.48}, {'connected_gene': 'MARCH5', 'score': 11.53}, {'connected_gene': 'ENSG00000252993', 'score': 11.02}, {'connected_gene': 'SDHCP2', 'score': 0.37}]
chr10	GH10I092304	92304735	92306558	0.43	[{'connected_gene': 'GC10P092304', 'score': 550.77}, {'connected_gene': 'BTAF1', 'score': 9.01}, {'connected_gene': 'EXOC6', 'score': 4.68}, {'connected_gene': 'MARCH5', 'score': 0.39}, {'connected_gene': 'GC10P092335', 'score': 0.31}, {'connected_gene': 'GC10M092263', 'score': 0.13}]
chr10	GH10I092307	92307038	92307349	0.38	[{'connected_gene': 'GC10P092304', 'score': 0.77}, {'connected_gene': 'MARCH5', 'score': 0.37}, {'connected_gene': 'GC10P092335', 'score': 0.31}, {'connected_gene': 'GC10M092263', 'score': 0.13}]
chr10	GH10I092112	92112664	92112813	0.38	[{'connected_gene': 'ENSG00000252993', 'score': 11.11}, {'connected_gene': 'CPEB3', 'score': 10.72}, {'connected_gene': 'MARCH5', 'score': 10.72}, {'connected_gene': 'SDHCP2', 'score': 0.44}]