PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000288774	[[2336235, 2337273], [2337922, 2338058], [2338158, 2338394], [2339890, 2340297], [2341809, 2341890], [2343829, 2343969]]	[[2337204, 2337273], [2337922, 2338058], [2338158, 2338394], [2339890, 2340297], [2341809, 2341890], [2343829, 2343941]]
ENST00000447513	[[2336257, 2337273], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2344010]]	[[2337204, 2337273], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2343941]]
ENST00000507596	[[2336276, 2337267], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2343979]]	[[2337204, 2337267], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2343941]]
ENST00000510434	[[2337956, 2338058], [2338158, 2338334], [2339894, 2340297], [2341809, 2341890], [2343829, 2343974]]	[[2338300, 2338334], [2339894, 2340297], [2341809, 2341890], [2343829, 2343941]]
ENST00000508384	[[2339968, 2340297], [2341809, 2341890], [2345035, 2345236]]	[[2339968, 2340058]]
ENST00000515760	[[2340021, 2340297], [2341116, 2341443]]	None
ENST00000502666	[[2340042, 2340297], [2341699, 2341890], [2342068, 2342275]]	[[2342197, 2342275]]
ENST00000504111	[[2340073, 2340297], [2341809, 2341890], [2342068, 2342312]]	None
ENST00000514502	[[2340193, 2340297], [2341809, 2341890], [2342068, 2342307], [2343829, 2343953]]	[[2342197, 2342307], [2343829, 2343941]]
NM_153818	[[2336240, 2337273], [2337922, 2338058], [2338158, 2338394], [2339890, 2340297], [2341809, 2341890], [2343829, 2344010]]	[[2337204, 2337273], [2337922, 2338058], [2338158, 2338394], [2339890, 2340297], [2341809, 2341890], [2343829, 2343941]]
NM_002617	[[2336240, 2337273], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2344010]]	[[2337204, 2337273], [2337922, 2338058], [2338158, 2338334], [2339890, 2340297], [2341809, 2341890], [2343829, 2343941]]

Promoter

Chrom	Start	End	Description
chr1	2343951	2344018	CAGE_peak_1_at_PEX10_5end
chr1	2345239	2345255	CAGE_peak_3_at_PEX10_5end
chr1	2345260	2345297	CAGE_peak_2_at_PEX10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I002411	2411555	2417307	2.44	[{'connected_gene': 'PLCH2', 'score': 569.09}, {'connected_gene': 'PEX10', 'score': 555.54}, {'connected_gene': 'MORN1', 'score': 18.61}, {'connected_gene': 'LOC100129381', 'score': 13.27}, {'connected_gene': 'LOC100129534', 'score': 12.56}, {'connected_gene': 'SLC35E2', 'score': 11.58}, {'connected_gene': 'FAAP20', 'score': 11.22}, {'connected_gene': 'MIB2', 'score': 11.19}, {'connected_gene': 'ATAD3B', 'score': 10.65}, {'connected_gene': 'SLC35E2B', 'score': 9.87}, {'connected_gene': 'LOC100288379', 'score': 4.57}, {'connected_gene': 'ATAD3C', 'score': 4.49}]
chr1	GH01I002197	2197421	2200256	1.86	[{'connected_gene': 'CCNL2', 'score': 15.09}, {'connected_gene': 'LOC100288379', 'score': 13.47}, {'connected_gene': 'CDK11A', 'score': 13.47}, {'connected_gene': 'SKI', 'score': 12.47}, {'connected_gene': 'RER1', 'score': 12.08}, {'connected_gene': 'MORN1', 'score': 12.08}, {'connected_gene': 'SDF4', 'score': 11.53}, {'connected_gene': 'PEX10', 'score': 11.25}, {'connected_gene': 'INTS11', 'score': 11.07}, {'connected_gene': 'ENSG00000240731', 'score': 10.99}, {'connected_gene': 'MXRA8', 'score': 10.69}, {'connected_gene': 'ATAD3B', 'score': 10.54}, {'connected_gene': 'LOC105378593', 'score': 0.44}, {'connected_gene': 'PRKCZ-AS1', 'score': 0.39}, {'connected_gene': 'FAAP20', 'score': 0.39}]
chr1	GH01I003218	3218100	3223778	1.42	[{'connected_gene': 'MORN1', 'score': 14.93}, {'connected_gene': 'TP73-AS1', 'score': 13.18}, {'connected_gene': 'LOC100129534', 'score': 11.8}, {'connected_gene': 'PEX10', 'score': 4.76}, {'connected_gene': 'PRDM16', 'score': 2.35}, {'connected_gene': 'ARHGEF16', 'score': 1.56}, {'connected_gene': 'LOC105378605', 'score': 0.44}, {'connected_gene': 'PIR41593', 'score': 0.37}, {'connected_gene': 'GC01P003241', 'score': 0.37}]
chr1	GH01I003217	3217327	3217719	0.48	[{'connected_gene': 'PEX10', 'score': 4.75}, {'connected_gene': 'PRDM16', 'score': 1.72}, {'connected_gene': 'LOC105378605', 'score': 0.77}, {'connected_gene': 'PIR41593', 'score': 0.34}, {'connected_gene': 'GC01P003241', 'score': 0.34}]
chr1	GH01I002408	2408293	2411265	0.49	[{'connected_gene': 'PEX10', 'score': 9.18}, {'connected_gene': 'LOC100129534', 'score': 6.59}, {'connected_gene': 'PIR43593', 'score': 0.44}]
chr1	GH01I002191	2191776	2196541	2.43	[{'connected_gene': 'FAAP20', 'score': 558.84}, {'connected_gene': 'SKI', 'score': 12.44}, {'connected_gene': 'RER1', 'score': 12.07}, {'connected_gene': 'MORN1', 'score': 12.07}, {'connected_gene': 'PEX10', 'score': 11.84}, {'connected_gene': 'PRKCZ-AS1', 'score': 10.01}, {'connected_gene': 'ENSG00000271806', 'score': 5.31}, {'connected_gene': 'LOC105378593', 'score': 0.39}]
chr1	GH01I002389	2389860	2396389	2.24	[{'connected_gene': 'RER1', 'score': 564.75}, {'connected_gene': 'MORN1', 'score': 550.77}, {'connected_gene': 'CDK11A', 'score': 20.14}, {'connected_gene': 'LOC100288379', 'score': 14.9}, {'connected_gene': 'ATAD3B', 'score': 12.8}, {'connected_gene': 'CCNL2', 'score': 12.57}, {'connected_gene': 'SLC35E2', 'score': 11.65}, {'connected_gene': 'CDK11B', 'score': 11.07}, {'connected_gene': 'TNFRSF14', 'score': 11.01}, {'connected_gene': 'LOC100129381', 'score': 10.42}, {'connected_gene': 'LOC100129534', 'score': 10.08}, {'connected_gene': 'FAAP20', 'score': 10.08}, {'connected_gene': 'ENSG00000225931', 'score': 9.95}, {'connected_gene': 'ENSG00000272455', 'score': 9.78}, {'connected_gene': 'PEX10', 'score': 9.56}, {'connected_gene': 'ENSG00000226286', 'score': 4.88}, {'connected_gene': 'GC01M002393', 'score': 0.44}]
chr1	GH01I002403	2403816	2407882	0.82	[{'connected_gene': 'PIR43593', 'score': 550.77}, {'connected_gene': 'PEX10', 'score': 10.53}, {'connected_gene': 'RER1', 'score': 7.11}]