PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366697	[[228595640, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228603730]]	[[228595901, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
ENST00000366698	[[228595736, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602814], [228604239, 228604347]]	[[228595901, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
ENST00000295033	[[228595736, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602778], [228604239, 228604365]]	[[228595901, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
ENST00000456946	[[228596400, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602778], [228604087, 228604458]]	[[228596723, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
ENST00000479800	[[228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602700], [228604239, 228604354]]	[[228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602692]]
ENST00000355586	[[228601496, 228601593], [228602344, 228602814], [228604087, 228604328]]	[[228601496, 228601593], [228602344, 228602773]]
ENST00000457345	[[228602600, 228602700], [228604087, 228604562]]	[[228602600, 228602692]]
ENST00000520264	[[228602621, 228602906], [228604087, 228604353]]	[[228602621, 228602773]]
NM_016102	[[228595635, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602814], [228604239, 228604583]]	[[228595901, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
NM_001024940	[[228595635, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602778], [228604239, 228604583]]	[[228595901, 228596452], [228596872, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]
NM_001134855	[[228596474, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602778], [228604087, 228604583]]	[[228596723, 228596976], [228597089, 228597112], [228598646, 228598877], [228601497, 228601593], [228602344, 228602773]]

Promoter

Chrom	Start	End	Description
chr1	228603694	228603706	CAGE_peak_7_at_TRIM17_5end
chr1	228604336	228604346	CAGE_peak_11_at_TRIM17_5end
chr1	228604381	228604423	CAGE_peak_2_at_TRIM17_5end
chr1	228604454	228604504	CAGE_peak_3_at_TRIM17_5end
chr1	228604544	228604568	CAGE_peak_1_at_TRIM17_5end
chr1	228604572	228604589	CAGE_peak_4_at_TRIM17_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I228205	228205238	228211521	1.63	[{'connected_gene': 'OBSCN', 'score': 591.92}, {'connected_gene': 'RNF187', 'score': 5.12}, {'connected_gene': 'TRIM17', 'score': 2.35}, {'connected_gene': 'GJC2', 'score': 1.72}, {'connected_gene': 'OBSCN-AS1', 'score': 0.44}]
chr1	GH01I228420	228420213	228422421	0.86	[{'connected_gene': 'OBSCN-AS1', 'score': 4.1}, {'connected_gene': 'TRIM17', 'score': 0.77}, {'connected_gene': 'GC01M228428', 'score': 0.77}]
chr1	GH01I228445	228445521	228446654	1.17	[{'connected_gene': 'TRIM17', 'score': 16.97}, {'connected_gene': 'OBSCN', 'score': 16.3}, {'connected_gene': 'TRIM11', 'score': 13.15}, {'connected_gene': 'ENSG00000231563', 'score': 11.92}, {'connected_gene': 'OBSCN-AS1', 'score': 10.39}, {'connected_gene': 'WNT3A', 'score': 9.99}, {'connected_gene': 'GJC2', 'score': 4.48}, {'connected_gene': 'HIST3H2A', 'score': 2.15}, {'connected_gene': 'RPL23AP15', 'score': 0.77}, {'connected_gene': 'HIST3H3', 'score': 0.34}]
chr1	GH01I228416	228416600	228416801	1.23	[{'connected_gene': 'TRIM17', 'score': 550.77}, {'connected_gene': 'ENSG00000231563', 'score': 0.44}]
chr1	GH01I228418	228416320	228416469	0.49	[{'connected_gene': 'TRIM17', 'score': 550.77}, {'connected_gene': 'ENSG00000231563', 'score': 0.44}]
chr1	GH01I228417	228417177	228418478	0.68	[{'connected_gene': 'TRIM17', 'score': 559.45}, {'connected_gene': 'GC01M228428', 'score': 0.44}]
chr1	GH01I228366	228366915	228370597	1.41	[{'connected_gene': 'LOC101927401', 'score': 550.77}, {'connected_gene': 'OBSCN', 'score': 7.67}, {'connected_gene': 'TRIM17', 'score': 6.03}, {'connected_gene': 'ENSG00000270104', 'score': 0.37}]
chr1	GH01I228403	228403895	228408562	2.03	[{'connected_gene': 'ENSG00000231563', 'score': 550.77}, {'connected_gene': 'TRIM11', 'score': 550.77}, {'connected_gene': 'GC01M228396', 'score': 550.77}, {'connected_gene': 'CICP26', 'score': 18.08}, {'connected_gene': 'ZNF678', 'score': 12.48}, {'connected_gene': 'HIST3H3', 'score': 10.87}, {'connected_gene': 'C1orf35', 'score': 10.54}, {'connected_gene': 'MRPL55', 'score': 10.43}, {'connected_gene': 'ENSG00000269890', 'score': 10.42}, {'connected_gene': 'WNT3A', 'score': 4.47}, {'connected_gene': 'PIR32292', 'score': 0.77}, {'connected_gene': 'GC01M228403', 'score': 0.77}, {'connected_gene': 'TRIM17', 'score': 0.39}]
chr1	GH01I228393	228392900	228394772	0.63	[{'connected_gene': 'ENSG00000270094', 'score': 550.77}, {'connected_gene': 'RPL23AP15', 'score': 11.58}, {'connected_gene': 'HIST3H2A', 'score': 11.57}, {'connected_gene': 'HIST3H2BB', 'score': 11.57}, {'connected_gene': 'HIST3H3', 'score': 11.34}, {'connected_gene': 'OBSCN-AS1', 'score': 10.61}, {'connected_gene': 'OBSCN', 'score': 10.6}, {'connected_gene': 'TRIM17', 'score': 5.71}, {'connected_gene': 'ENSG00000270104', 'score': 0.44}, {'connected_gene': 'TRIM11', 'score': 0.39}]
chr1	GH01I228392	228392311	228392792	0.82	[{'connected_gene': 'ENSG00000270094', 'score': 550.77}, {'connected_gene': 'RPL23AP15', 'score': 11.58}, {'connected_gene': 'HIST3H2A', 'score': 11.56}, {'connected_gene': 'HIST3H2BB', 'score': 11.56}, {'connected_gene': 'OBSCN-AS1', 'score': 10.61}, {'connected_gene': 'OBSCN', 'score': 10.61}, {'connected_gene': 'TRIM17', 'score': 5.72}, {'connected_gene': 'ENSG00000270104', 'score': 0.44}]