PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493961	[[72642036, 72642242], [72644908, 72644989], [72645554, 72645656]]	None
ENST00000299299	[[72643266, 72643805], [72644908, 72644989], [72645554, 72645686], [72648287, 72648541]]	[[72643706, 72643805], [72644908, 72644989], [72645554, 72645686], [72648287, 72648290]]
ENST00000493228	[[72643688, 72643805], [72644908, 72644989], [72645554, 72645686], [72647609, 72648011]]	None
NM_001323004	[[72642036, 72642242], [72644908, 72644989], [72645554, 72645686], [72648287, 72648543]]	[[72642143, 72642242], [72644908, 72644989], [72645554, 72645686], [72648287, 72648290]]
NM_001289797	[[72643264, 72643805], [72644908, 72644989], [72645554, 72645686], [72647609, 72648011]]	[[72643706, 72643805], [72644908, 72644977]]
NM_000281	[[72643264, 72643805], [72644908, 72644989], [72645554, 72645686], [72648287, 72648543]]	[[72643706, 72643805], [72644908, 72644989], [72645554, 72645686], [72648287, 72648290]]

Promoter

Chrom	Start	End	Description
chr10	72645686	72645703	CAGE_peak_3_at_PCBD1_5end
chr10	72645773	72645784	CAGE_peak_11_at_PCBD1_5end
chr10	72647629	72647647	CAGE_peak_4_at_PCBD1_5end
chr10	72648303	72648373	CAGE_peak_1_at_PCBD1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I070549	70549965	70550114	0.74	[{'connected_gene': 'SGPL1', 'score': 11.45}, {'connected_gene': 'PCBD1', 'score': 11.27}, {'connected_gene': 'PRF1', 'score': 0.23}, {'connected_gene': 'YY1P1', 'score': 0.21}, {'connected_gene': 'PALD1', 'score': 0.16}]
chr10	GH10I070551	70551043	70553978	0.86	[{'connected_gene': 'SGPL1', 'score': 11.46}, {'connected_gene': 'PCBD1', 'score': 11.27}, {'connected_gene': 'PRF1', 'score': 0.23}, {'connected_gene': 'YY1P1', 'score': 0.2}, {'connected_gene': 'PALD1', 'score': 0.16}]
chr10	GH10I070890	70890571	70891534	0.81	[{'connected_gene': 'SGPL1', 'score': 8.89}, {'connected_gene': 'PCBD1', 'score': 8.7}, {'connected_gene': 'ENSG00000271409', 'score': 0.28}]
chr10	GH10I070854	70854004	70854153	0.59	[{'connected_gene': 'SGPL1', 'score': 11.31}, {'connected_gene': 'PCBD1', 'score': 11.08}, {'connected_gene': 'GC10P070863', 'score': 0.44}]
chr10	GH10I070849	70849289	70850680	0.57	[{'connected_gene': 'SGPL1', 'score': 31.94}, {'connected_gene': 'PCBD1', 'score': 11.33}, {'connected_gene': 'GC10P070863', 'score': 0.39}]
chr10	GH10I070831	70831316	70835057	1.28	[{'connected_gene': 'SGPL1', 'score': 30.93}, {'connected_gene': 'PCBD1', 'score': 21.33}, {'connected_gene': 'GC10P070863', 'score': 0.29}]
chr10	GH10I070828	70828681	70831295	0.64	[{'connected_gene': 'SGPL1', 'score': 28.47}, {'connected_gene': 'PCBD1', 'score': 16.05}, {'connected_gene': 'GC10P070863', 'score': 0.29}]
chr10	GH10I070835	70835842	70836754	0.64	[{'connected_gene': 'SGPL1', 'score': 11.63}, {'connected_gene': 'PCBD1', 'score': 10.59}, {'connected_gene': 'GC10P070863', 'score': 0.31}]
chr10	GH10I070851	70851331	70852295	0.79	[{'connected_gene': 'SGPL1', 'score': 39.4}, {'connected_gene': 'PCBD1', 'score': 17.06}, {'connected_gene': 'GC10P070863', 'score': 0.39}]
chr10	GH10I070858	70858284	70859513	0.43	[{'connected_gene': 'SGPL1', 'score': 32.11}, {'connected_gene': 'PCBD1', 'score': 16.41}, {'connected_gene': 'GC10P070863', 'score': 0.77}]
chr10	GH10I070843	70843469	70846414	0.67	[{'connected_gene': 'SGPL1', 'score': 39.54}, {'connected_gene': 'TYSND1', 'score': 9.71}, {'connected_gene': 'PCBD1', 'score': 5.8}, {'connected_gene': 'GC10P070863', 'score': 0.37}]
chr10	GH10I070588	70588068	70591653	1.12	[{'connected_gene': 'SAR1A', 'score': 11.35}, {'connected_gene': 'PCBD1', 'score': 10.67}, {'connected_gene': 'ADAMTS14', 'score': 9.69}, {'connected_gene': 'PRF1', 'score': 0.39}, {'connected_gene': 'YY1P1', 'score': 0.15}]
chr10	GH10I071289	71289654	71290361	0.38	[{'connected_gene': 'SLC29A3', 'score': 11.08}, {'connected_gene': 'PCBD1', 'score': 10.6}, {'connected_gene': 'GC10P071300', 'score': 0.39}, {'connected_gene': 'PIR34735', 'score': 0.37}, {'connected_gene': 'UNC5B', 'score': 0.18}]
chr10	GH10I071285	71285204	71285353	0.83	[{'connected_gene': 'SLC29A3', 'score': 11.06}, {'connected_gene': 'PCBD1', 'score': 10.6}, {'connected_gene': 'PIR34735', 'score': 0.39}, {'connected_gene': 'GC10P071300', 'score': 0.39}, {'connected_gene': 'UNC5B', 'score': 0.19}]
chr10	GH10I070805	70804525	70804674	0.38	[{'connected_gene': 'PCBD1', 'score': 11.08}, {'connected_gene': 'SGPL1', 'score': 0.39}, {'connected_gene': 'RPS26P40', 'score': 0.39}]
chr10	GH10I070806	70806005	70806154	0.2	[{'connected_gene': 'PCBD1', 'score': 11.2}, {'connected_gene': 'SGPL1', 'score': 0.44}, {'connected_gene': 'RPS26P40', 'score': 0.39}]
chr10	GH10I070887	70887175	70889527	1.5	[{'connected_gene': 'PCBD1', 'score': 561.15}, {'connected_gene': 'SGPL1', 'score': 16.85}, {'connected_gene': 'PIR33878', 'score': 0.39}]
chr10	GH10I071220	71220368	71221707	0.64	[{'connected_gene': 'PCBD1', 'score': 9.7}, {'connected_gene': 'UNC5B-AS1', 'score': 7.27}, {'connected_gene': 'UNC5B', 'score': 0.44}, {'connected_gene': 'PIR59347', 'score': 0.37}]
chr10	GH10I071222	71222471	71223552	0.94	[{'connected_gene': 'PCBD1', 'score': 9.7}, {'connected_gene': 'UNC5B-AS1', 'score': 0.77}, {'connected_gene': 'UNC5B', 'score': 0.39}, {'connected_gene': 'PIR59347', 'score': 0.37}]
chr10	GH10I071223	71223697	71226042	0.81	[{'connected_gene': 'PCBD1', 'score': 10.15}, {'connected_gene': 'UNC5B-AS1', 'score': 0.44}, {'connected_gene': 'UNC5B', 'score': 0.39}, {'connected_gene': 'PIR59347', 'score': 0.39}]
chr10	GH10I071303	71303404	71303533	0.64	[{'connected_gene': 'PCBD1', 'score': 9.31}, {'connected_gene': 'GC10P071300', 'score': 0.77}, {'connected_gene': 'SLC29A3', 'score': 0.37}]
chr10	GH10I070803	70803745	70803894	0.2	[{'connected_gene': 'PCBD1', 'score': 16.18}, {'connected_gene': 'RPS26P40', 'score': 0.44}, {'connected_gene': 'SGPL1', 'score': 0.39}]
chr10	GH10I070804	70803977	70804239	0.2	[{'connected_gene': 'PCBD1', 'score': 11.08}, {'connected_gene': 'RPS26P40', 'score': 0.44}, {'connected_gene': 'SGPL1', 'score': 0.39}]
chr10	GH10I070970	70970944	70971153	0.31	[{'connected_gene': 'PCBD1', 'score': 10.38}, {'connected_gene': 'UNC5B', 'score': 10.37}, {'connected_gene': 'LOC105378350', 'score': 0.44}, {'connected_gene': 'LOC105378349', 'score': 0.29}]
chr10	GH10I070595	70595125	70598672	1.08	[{'connected_gene': 'NODAL', 'score': 9.54}, {'connected_gene': 'ADAMTS14', 'score': 8.96}, {'connected_gene': 'PCBD1', 'score': 5.12}, {'connected_gene': 'PRF1', 'score': 0.44}, {'connected_gene': 'YY1P1', 'score': 0.14}]
chr10	GH10I070477	70477530	70480926	2.48	[{'connected_gene': 'PALD1', 'score': 578.31}, {'connected_gene': 'NODAL', 'score': 10.9}, {'connected_gene': 'PCBD1', 'score': 9.86}, {'connected_gene': 'YY1P1', 'score': 0.44}]
chr10	GH10I070481	70481661	70483823	1	[{'connected_gene': 'PALD1', 'score': 14.7}, {'connected_gene': 'NODAL', 'score': 10.9}, {'connected_gene': 'PCBD1', 'score': 9.86}, {'connected_gene': 'YY1P1', 'score': 0.77}]
chr10	GH10I070759	70759001	70759600	1.01	[{'connected_gene': 'TBATA', 'score': 12.01}, {'connected_gene': 'PCBD1', 'score': 10.86}, {'connected_gene': 'TYSND1', 'score': 10.58}, {'connected_gene': 'ADAMTS14', 'score': 0.17}]
chr10	GH10I071265	71265234	71272946	1.7	[{'connected_gene': 'UNC5B', 'score': 13.37}, {'connected_gene': 'UNC5B-AS1', 'score': 11.52}, {'connected_gene': 'SLC29A3', 'score': 10.8}, {'connected_gene': 'CDH23-AS1', 'score': 10.18}, {'connected_gene': 'CDH23', 'score': 10.18}, {'connected_gene': 'PCBD1', 'score': 9.89}, {'connected_gene': 'PIR34735', 'score': 0.77}, {'connected_gene': 'PIR59347', 'score': 0.29}]
chr10	GH10I071251	71251563	71257183	1.15	[{'connected_gene': 'UNC5B', 'score': 24.67}, {'connected_gene': 'UNC5B-AS1', 'score': 11.61}, {'connected_gene': 'PCBD1', 'score': 10.25}, {'connected_gene': 'CDH23', 'score': 10.12}, {'connected_gene': 'PIR59347', 'score': 0.37}, {'connected_gene': 'PIR34735', 'score': 0.37}]
chr10	GH10I071231	71231860	71237179	1.57	[{'connected_gene': 'UNC5B', 'score': 37.82}, {'connected_gene': 'UNC5B-AS1', 'score': 12.44}, {'connected_gene': 'PCBD1', 'score': 10.2}, {'connected_gene': 'SLC29A3', 'score': 9.75}, {'connected_gene': 'C10orf105', 'score': 2.25}, {'connected_gene': 'PIR59347', 'score': 0.77}]
chr10	GH10I071240	71240190	71242976	1.15	[{'connected_gene': 'UNC5B', 'score': 29.48}, {'connected_gene': 'UNC5B-AS1', 'score': 22.29}, {'connected_gene': 'PCBD1', 'score': 10.48}, {'connected_gene': 'PIR59347', 'score': 0.77}, {'connected_gene': 'PIR34735', 'score': 0.29}]
chr10	GH10I071243	71243320	71249902	1.24	[{'connected_gene': 'UNC5B', 'score': 26.31}, {'connected_gene': 'UNC5B-AS1', 'score': 22.29}, {'connected_gene': 'PCBD1', 'score': 10.48}, {'connected_gene': 'PIR59347', 'score': 0.44}, {'connected_gene': 'PIR34735', 'score': 0.31}]
chr10	GH10I071283	71283338	71285107	0.6	[{'connected_gene': 'UNC5B', 'score': 16.48}, {'connected_gene': 'SLC29A3', 'score': 11.05}, {'connected_gene': 'PCBD1', 'score': 10.6}, {'connected_gene': 'PIR34735', 'score': 0.39}, {'connected_gene': 'GC10P071300', 'score': 0.37}]
chr10	GH10I071307	71307255	71308792	0.6	[{'connected_gene': 'UNC5B', 'score': 10.17}, {'connected_gene': 'PCBD1', 'score': 9.31}, {'connected_gene': 'SLC29A3', 'score': 7.63}, {'connected_gene': 'GC10P071300', 'score': 0.44}]
chr10	GH10I071036	71036324	71036473	0.38	[{'connected_gene': 'UNC5B', 'score': 10.5}, {'connected_gene': 'PCBD1', 'score': 9.94}, {'connected_gene': 'LOC105378351', 'score': 0.29}, {'connected_gene': 'PIR52978', 'score': 0.13}]
chr10	GH10I071250	71250093	71251244	0.57	[{'connected_gene': 'UNC5B', 'score': 25.85}, {'connected_gene': 'PCBD1', 'score': 10.25}, {'connected_gene': 'PIR59347', 'score': 0.39}, {'connected_gene': 'PIR34735', 'score': 0.34}]
chr10	GH10I070575	70575528	70580763	1.43	[{'connected_gene': 'ADAMTS14', 'score': 27.5}, {'connected_gene': 'PRF1', 'score': 12.94}, {'connected_gene': 'NPFFR1', 'score': 12.52}, {'connected_gene': 'PCBD1', 'score': 10.72}, {'connected_gene': 'YY1P1', 'score': 0.16}]
chr10	GH10I070655	70655279	70658260	1.51	[{'connected_gene': 'ADAMTS14', 'score': 28.7}, {'connected_gene': 'PRF1', 'score': 11.88}, {'connected_gene': 'PCBD1', 'score': 10.01}, {'connected_gene': 'NODAL', 'score': 9.54}, {'connected_gene': 'GC10M070611', 'score': 0.26}]
chr10	GH10I070693	70693007	70696077	0.94	[{'connected_gene': 'ADAMTS14', 'score': 38.47}, {'connected_gene': 'PRF1', 'score': 11.98}, {'connected_gene': 'PCBD1', 'score': 10.2}, {'connected_gene': 'TYSND1', 'score': 4.66}, {'connected_gene': 'TBATA', 'score': 0.16}]
chr10	GH10I070573	70573194	70574625	0.72	[{'connected_gene': 'ADAMTS14', 'score': 20.54}, {'connected_gene': 'PRF1', 'score': 12.91}, {'connected_gene': 'PCBD1', 'score': 10.72}, {'connected_gene': 'YY1P1', 'score': 0.17}]
chr10	GH10I070754	70754150	70756088	0.31	[{'connected_gene': 'ADAMTS14', 'score': 19.08}, {'connected_gene': 'PCBD1', 'score': 9.79}, {'connected_gene': 'TBATA', 'score': 5.24}]
chr10	GH10I070615	70615741	70619554	0.82	[{'connected_gene': 'ADAMTS14', 'score': 30.91}, {'connected_gene': 'PCBD1', 'score': 10.14}, {'connected_gene': 'TYSND1', 'score': 4.99}, {'connected_gene': 'GC10M070611', 'score': 0.77}]
chr10	GH10I070622	70622508	70627054	0.66	[{'connected_gene': 'ADAMTS14', 'score': 30.8}, {'connected_gene': 'PCBD1', 'score': 15.11}, {'connected_gene': 'GC10M070611', 'score': 0.39}]
chr10	GH10I070756	70756452	70757355	0.72	[{'connected_gene': 'ADAMTS14', 'score': 17.28}, {'connected_gene': 'TBATA', 'score': 12.01}, {'connected_gene': 'PCBD1', 'score': 10.85}]
chr10	GH10I071299	71299201	71299800	0.31	[{'connected_gene': 'GC10P071300', 'score': 550.77}, {'connected_gene': 'CDH23', 'score': 10.98}, {'connected_gene': 'UNC5B', 'score': 10.71}, {'connected_gene': 'PCBD1', 'score': 9.89}, {'connected_gene': 'SLC29A3', 'score': 5.13}, {'connected_gene': 'PIR34735', 'score': 0.31}]
chr10	GH10I070880	70880124	70880313	0.82	[{'connected_gene': 'PIR33878', 'score': 0.77}, {'connected_gene': 'PCBD1', 'score': 0.44}, {'connected_gene': 'SGPL1', 'score': 0.21}]