PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265081	[[79950466, 79950783], [79952229, 79952350], [79960961, 79961182], [79965915, 79966128], [79968062, 79968179], [79968559, 79968677], [79970801, 79970947], [79974745, 79974912], [80021271, 80021384], [80024669, 80024784], [80037282, 80037367], [80040324, 80040434], [80057364, 80057497], [80063751, 80063939], [80064653, 80064822], [80071512, 80071577], [80074538, 80074655], [80083383, 80083491], [80088551, 80088663], [80109402, 80109560], [80149948, 80150135], [80160631, 80160761], [80168934, 80169106], [80171569, 80172279]]	[[79950546, 79950783], [79952229, 79952350], [79960961, 79961182], [79965915, 79966128], [79968062, 79968179], [79968559, 79968677], [79970801, 79970947], [79974745, 79974912], [80021271, 80021384], [80024669, 80024784], [80037282, 80037367], [80040324, 80040434], [80057364, 80057497], [80063751, 80063939], [80064653, 80064822], [80071512, 80071577], [80074538, 80074655], [80083383, 80083491], [80088551, 80088663], [80109402, 80109560], [80149948, 80150135], [80160631, 80160761], [80168934, 80169106], [80171569, 80171681]]
ENST00000512531	[[79950970, 79951398], [79952229, 79952332]]	None
ENST00000512258	[[80011023, 80011212], [80021271, 80021384], [80024669, 80024784], [80037282, 80037367], [80040324, 80040434], [80057364, 80057429]]	None
NM_002439	[[79950466, 79950783], [79952229, 79952350], [79960961, 79961182], [79965915, 79966128], [79968062, 79968179], [79968559, 79968677], [79970801, 79970947], [79974745, 79974912], [80021271, 80021384], [80024669, 80024784], [80037282, 80037367], [80040324, 80040434], [80057364, 80057497], [80063751, 80063939], [80064653, 80064822], [80071512, 80071577], [80074538, 80074655], [80083383, 80083491], [80088551, 80088663], [80109402, 80109560], [80149948, 80150135], [80160631, 80160761], [80168934, 80169106], [80171569, 80172634]]	[[79950546, 79950783], [79952229, 79952350], [79960961, 79961182], [79965915, 79966128], [79968062, 79968179], [79968559, 79968677], [79970801, 79970947], [79974745, 79974912], [80021271, 80021384], [80024669, 80024784], [80037282, 80037367], [80040324, 80040434], [80057364, 80057497], [80063751, 80063939], [80064653, 80064822], [80071512, 80071577], [80074538, 80074655], [80083383, 80083491], [80088551, 80088663], [80109402, 80109560], [80149948, 80150135], [80160631, 80160761], [80168934, 80169106], [80171569, 80171681]]

Promoter

Chrom	Start	End	Description
chr5	79950463	79950487	CAGE_peak_1_at_MSH3_5end
chr5	79950496	79950522	CAGE_peak_2_at_MSH3_5end
chr5	79950526	79950538	CAGE_peak_3_at_MSH3_5end
chr5	79950963	79950981	CAGE_peak_4_at_MSH3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I081005	81005808	81008022	0.96	[{'connected_gene': 'RASGRF2', 'score': 13.55}, {'connected_gene': 'RASGRF2-AS1', 'score': 11.61}, {'connected_gene': 'MSH3', 'score': 5.59}, {'connected_gene': 'ENSG00000251001', 'score': 0.44}, {'connected_gene': 'ENSG00000249772', 'score': 0.14}]
chr5	GH05I080351	80351601	80352000	0.61	[{'connected_gene': 'CRSP8P', 'score': 550.77}, {'connected_gene': 'MSH3', 'score': 4.9}, {'connected_gene': 'RBMX2P5', 'score': 0.37}]
chr5	GH05I080162	80162432	80162797	0.36	[{'connected_gene': 'SERINC5', 'score': 13.92}, {'connected_gene': 'ENSG00000251675', 'score': 11.74}, {'connected_gene': 'DHFR', 'score': 4.62}, {'connected_gene': 'MSH3', 'score': 1.77}, {'connected_gene': 'GC05P080147', 'score': 0.37}]
chr5	GH05I080860	80860436	80862170	0.2	[{'connected_gene': 'DHFR', 'score': 22.66}, {'connected_gene': 'MSH3', 'score': 14.62}, {'connected_gene': 'RPS26P27', 'score': 0.44}, {'connected_gene': 'RASGRF2', 'score': 0.15}]
chr5	GH05I080654	80652842	80656635	2.02	[{'connected_gene': 'DHFR', 'score': 618.66}, {'connected_gene': 'MSH3', 'score': 580.73}, {'connected_gene': 'GC05P080655', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 12.75}, {'connected_gene': 'ZCCHC9', 'score': 10.63}]
chr5	GH05I080754	80754772	80758519	0.91	[{'connected_gene': 'DHFR', 'score': 45.45}, {'connected_gene': 'MSH3', 'score': 17.13}, {'connected_gene': 'ENSG00000248967', 'score': 0.44}, {'connected_gene': 'GC05P080808', 'score': 0.23}]
chr5	GH05I080672	80672262	80672431	0.65	[{'connected_gene': 'DHFR', 'score': 0.37}, {'connected_gene': 'MSH3', 'score': 0.37}, {'connected_gene': 'ENSG00000248967', 'score': 0.19}]
chr5	GH05I080759	80759875	80760253	0.45	[{'connected_gene': 'DHFR', 'score': 8.17}, {'connected_gene': 'ENSG00000248967', 'score': 0.39}, {'connected_gene': 'GC05P080808', 'score': 0.25}, {'connected_gene': 'MSH3', 'score': 0.14}]
chr5	GH05I080667	80667853	80669044	0.7	[{'connected_gene': 'DHFR', 'score': 62.28}, {'connected_gene': 'MSH3', 'score': 33.16}, {'connected_gene': 'ENSG00000248967', 'score': 0.18}]
chr5	GH05I080623	80623601	80624400	0.65	[{'connected_gene': 'LINC01337', 'score': 550.77}, {'connected_gene': 'MSH3', 'score': 37.93}, {'connected_gene': 'ENSG00000249655', 'score': 0.44}]
chr5	GH05I080105	80105965	80107126	0.79	[{'connected_gene': 'ENSG00000251675', 'score': 12.15}, {'connected_gene': 'SERINC5', 'score': 10.92}, {'connected_gene': 'MSH3', 'score': 4.46}, {'connected_gene': 'GC05P080097', 'score': 0.44}]
chr5	GH05I080730	80730685	80730855	0.22	[{'connected_gene': 'ENSG00000248967', 'score': 0.37}, {'connected_gene': 'DHFR', 'score': 0.18}, {'connected_gene': 'MSH3', 'score': 0.18}]
chr5	GH05I080801	80801182	80801343	0.22	[{'connected_gene': 'ENSG00000249772', 'score': 9.52}, {'connected_gene': 'DHFR', 'score': 4.16}, {'connected_gene': 'GC05P080808', 'score': 0.44}, {'connected_gene': 'ENSG00000248967', 'score': 0.23}, {'connected_gene': 'MSH3', 'score': 0.11}]