PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263923	[[55944643, 55946330], [55948122, 55948208], [55948702, 55948802], [55953773, 55953925], [55955034, 55955140], [55955540, 55955640], [55955857, 55955969], [55956122, 55956245], [55958783, 55958881], [55960968, 55961122], [55961743, 55961832], [55962395, 55962509], [55963828, 55963933], [55964303, 55964439], [55964863, 55964970], [55968063, 55968195], [55968528, 55968675], [55970809, 55971151], [55971998, 55972107], [55972853, 55972977], [55973903, 55974060], [55976569, 55976733], [55976820, 55976935], [55979470, 55979648], [55980292, 55980432], [55981040, 55981209], [55981447, 55981578], [55984770, 55984967], [55987263, 55987357], [55991393, 55991756]]	[[55946107, 55946330], [55948122, 55948208], [55948702, 55948802], [55953773, 55953925], [55955034, 55955140], [55955540, 55955640], [55955857, 55955969], [55956122, 55956245], [55958783, 55958881], [55960968, 55961122], [55961743, 55961832], [55962395, 55962509], [55963828, 55963933], [55964303, 55964439], [55964863, 55964970], [55968063, 55968195], [55968528, 55968675], [55970809, 55971151], [55971998, 55972107], [55972853, 55972977], [55973903, 55974060], [55976569, 55976733], [55976820, 55976935], [55979470, 55979648], [55980292, 55980432], [55981040, 55981209], [55981447, 55981578], [55984770, 55984967], [55987263, 55987357], [55991393, 55991460]]
ENST00000509309	[[55961016, 55961122], [55961743, 55961832], [55962395, 55962887]]	None
ENST00000512566	[[55970759, 55971151], [55971998, 55972107], [55972853, 55972977], [55973903, 55974060], [55976569, 55976733], [55976820, 55976935], [55979470, 55979648], [55980292, 55980432], [55981040, 55981209], [55981447, 55981578], [55984770, 55984967], [55987263, 55987357], [55991393, 55991460]]	None
NM_002253	[[55944425, 55946330], [55948122, 55948208], [55948702, 55948802], [55953773, 55953925], [55955034, 55955140], [55955540, 55955640], [55955857, 55955969], [55956122, 55956245], [55958783, 55958881], [55960968, 55961122], [55961743, 55961832], [55962395, 55962509], [55963828, 55963933], [55964303, 55964439], [55964863, 55964970], [55968063, 55968195], [55968528, 55968675], [55970809, 55971151], [55971998, 55972107], [55972853, 55972977], [55973903, 55974060], [55976569, 55976733], [55976820, 55976935], [55979470, 55979648], [55980292, 55980432], [55981040, 55981209], [55981447, 55981578], [55984770, 55984967], [55987263, 55987357], [55991393, 55991762]]	[[55946107, 55946330], [55948122, 55948208], [55948702, 55948802], [55953773, 55953925], [55955034, 55955140], [55955540, 55955640], [55955857, 55955969], [55956122, 55956245], [55958783, 55958881], [55960968, 55961122], [55961743, 55961832], [55962395, 55962509], [55963828, 55963933], [55964303, 55964439], [55964863, 55964970], [55968063, 55968195], [55968528, 55968675], [55970809, 55971151], [55971998, 55972107], [55972853, 55972977], [55973903, 55974060], [55976569, 55976733], [55976820, 55976935], [55979470, 55979648], [55980292, 55980432], [55981040, 55981209], [55981447, 55981578], [55984770, 55984967], [55987263, 55987357], [55991393, 55991460]]

Promoter

Chrom	Start	End	Description
chr4	55953879	55953915	CAGE_peak_2_at_KDR_5end
chr4	55991752	55991770	CAGE_peak_1_at_KDR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I055279	55279578	55282478	0.2	[{'connected_gene': 'KDR', 'score': 15.1}, {'connected_gene': 'SRD5A3', 'score': 4.4}, {'connected_gene': 'RNU6-746P', 'score': 0.39}, {'connected_gene': 'LOC100128865', 'score': 0.21}]
chr4	GH04I055067	55067656	55070821	0.43	[{'connected_gene': 'KDR', 'score': 11.33}, {'connected_gene': 'EXOC1L', 'score': 4.98}, {'connected_gene': 'RN7SL424P', 'score': 0.44}, {'connected_gene': 'ENSG00000250646', 'score': 0.37}, {'connected_gene': 'GC04M055072', 'score': 0.34}]
chr4	GH04I054929	54929152	54931179	1.06	[{'connected_gene': 'KDR', 'score': 3.79}, {'connected_gene': 'GC04P054944', 'score': 0.39}, {'connected_gene': 'LINC02358', 'score': 0.18}]
chr4	GH04I055073	55073960	55075009	0.31	[{'connected_gene': 'KDR', 'score': 10.75}, {'connected_gene': 'RN7SL424P', 'score': 0.39}, {'connected_gene': 'GC04M055072', 'score': 0.37}, {'connected_gene': 'ENSG00000250646', 'score': 0.34}]
chr4	GH04I055078	55078301	55081038	0.66	[{'connected_gene': 'KDR', 'score': 11.29}, {'connected_gene': 'GC04M055072', 'score': 0.39}, {'connected_gene': 'RN7SL424P', 'score': 0.37}, {'connected_gene': 'ENSG00000250646', 'score': 0.31}]
chr4	GH04I055157	55157801	55158000	0.2	[{'connected_gene': 'KDR', 'score': 11.96}, {'connected_gene': 'RN7SL822P', 'score': 0.22}]
chr4	GH04I055177	55177539	55179286	0.6	[{'connected_gene': 'KDR', 'score': 57.36}, {'connected_gene': 'RN7SL822P', 'score': 0.28}]
chr4	GH04I055159	55159476	55161002	0.2	[{'connected_gene': 'KDR', 'score': 11.96}, {'connected_gene': 'RN7SL822P', 'score': 0.22}]
chr4	GH04I055169	55169214	55170050	0.54	[{'connected_gene': 'KDR', 'score': 55.55}, {'connected_gene': 'RN7SL822P', 'score': 0.25}]
chr4	GH04I055175	55175076	55176973	0.96	[{'connected_gene': 'KDR', 'score': 50.93}, {'connected_gene': 'RN7SL822P', 'score': 0.28}]
chr4	GH04I055183	55183119	55187913	1.05	[{'connected_gene': 'KDR', 'score': 61.05}, {'connected_gene': 'RN7SL822P', 'score': 0.29}]
chr4	GH04I055172	55172600	55174000	1.2	[{'connected_gene': 'KDR', 'score': 59.34}, {'connected_gene': 'RN7SL822P', 'score': 0.26}]
chr4	GH04I055132	55132669	55133421	0.43	[{'connected_gene': 'KDR', 'score': 0.44}, {'connected_gene': 'RN7SL822P', 'score': 0.18}]
chr4	GH04I055180	55180853	55182348	0.31	[{'connected_gene': 'KDR', 'score': 55.48}, {'connected_gene': 'RN7SL822P', 'score': 0.29}]
chr4	GH04I055125	55125179	55126201	1.63	[{'connected_gene': 'KDR', 'score': 550.77}, {'connected_gene': 'RN7SL822P', 'score': 0.16}]
chr4	GH04I055303	55303429	55304526	0.66	[{'connected_gene': 'KDR', 'score': 25.05}, {'connected_gene': 'LRRC34P2', 'score': 0.44}, {'connected_gene': 'RNU6-746P', 'score': 0.44}]
chr4	GH04I054985	54985875	54987277	0.46	[{'connected_gene': 'KDR', 'score': 18.3}, {'connected_gene': 'RPL38P3', 'score': 0.39}, {'connected_gene': 'GC04P054944', 'score': 0.26}, {'connected_gene': 'RNU6-410P', 'score': 0.25}]
chr4	GH04I055256	55256994	55257143	0.2	[{'connected_gene': 'KDR', 'score': 10.67}, {'connected_gene': 'LOC100128865', 'score': 0.28}, {'connected_gene': 'RNU6-746P', 'score': 0.28}]
chr4	GH04I055123	55123402	55123599	0.2	[{'connected_gene': 'KDR', 'score': 0.77}, {'connected_gene': 'GC04M055072', 'score': 0.29}]
chr4	GH04I055124	55123802	55124399	0.31	[{'connected_gene': 'KDR', 'score': 550.77}, {'connected_gene': 'GC04M055072', 'score': 0.29}]
chr4	GH04I055608	55608386	55611615	0.31	[{'connected_gene': 'NMU', 'score': 28.71}, {'connected_gene': 'TMEM165', 'score': 25.17}, {'connected_gene': 'KDR', 'score': 9.42}, {'connected_gene': 'SRD5A3', 'score': 5.69}, {'connected_gene': 'PDCL2', 'score': 0.37}]
chr4	GH04I055214	55214234	55214383	0.43	[{'connected_gene': 'RN7SL822P', 'score': 550.77}, {'connected_gene': 'KDR', 'score': 10.25}]
chr4	GH04I055311	55311855	55312119	0.92	[{'connected_gene': 'LRRC34P2', 'score': 550.77}, {'connected_gene': 'KDR', 'score': 9.65}, {'connected_gene': 'TMEM165', 'score': 2.2}, {'connected_gene': 'SRD5A3', 'score': 1.59}, {'connected_gene': 'RNU6-746P', 'score': 0.37}]