PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374561	[[23884408, 23884906], [23885425, 23885510], [23885617, 23886285]]	[[23885450, 23885510], [23885617, 23885917]]
ENST00000463312	[[23884424, 23884906], [23885425, 23885566]]	None
ENST00000486541	[[23884935, 23885510], [23885617, 23885934]]	None
NM_002167	[[23884420, 23884906], [23885425, 23885510], [23885617, 23886285]]	[[23885450, 23885510], [23885617, 23885917]]

Promoter

Chrom	Start	End	Description
chr1	23885981	23886002	CAGE_peak_1_at_ID3_5end
chr1	23886132	23886156	CAGE_peak_2_at_ID3_5end
chr1	23886329	23886336	CAGE_peak_3_at_ID3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I023512	23512826	23513138	0.33	[{'connected_gene': 'ZNF436', 'score': 19.63}, {'connected_gene': 'ID3', 'score': 11.02}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'HNRNPR', 'score': 2.22}, {'connected_gene': 'PIR36355', 'score': 0.77}, {'connected_gene': 'LOC101928163', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.37}]
chr1	GH01I023718	23718571	23718760	0.72	[{'connected_gene': 'ELOA', 'score': 12.3}, {'connected_gene': 'ID3', 'score': 10.16}, {'connected_gene': 'GC01P023723', 'score': 0.77}, {'connected_gene': 'GC01M023708', 'score': 0.39}]
chr1	GH01I023537	23537003	23538106	1.08	[{'connected_gene': 'TCEA3', 'score': 7.52}, {'connected_gene': 'ID3', 'score': 5.05}, {'connected_gene': 'E2F2', 'score': 0.44}, {'connected_gene': 'LOC105376859', 'score': 0.37}]
chr1	GH01I023497	23497168	23497801	1.26	[{'connected_gene': 'TCEA3', 'score': 17.39}, {'connected_gene': 'E2F2', 'score': 12.18}, {'connected_gene': 'ID3', 'score': 11.07}, {'connected_gene': 'MDS2', 'score': 10.57}, {'connected_gene': 'PIR36355', 'score': 0.39}, {'connected_gene': 'ASAP3', 'score': 0.39}]
chr1	GH01I023638	23638974	23640565	0.56	[{'connected_gene': 'ID3', 'score': 11.75}, {'connected_gene': 'MDS2', 'score': 11.47}, {'connected_gene': 'E2F2', 'score': 11.45}, {'connected_gene': 'ASAP3', 'score': 11.28}, {'connected_gene': 'GC01P023610', 'score': 0.31}, {'connected_gene': 'LOC729856', 'score': 0.29}]
chr1	GH01I023632	23632367	23633870	0.38	[{'connected_gene': 'ID3', 'score': 12.14}, {'connected_gene': 'MDS2', 'score': 11.87}, {'connected_gene': 'E2F2', 'score': 11.42}, {'connected_gene': 'ASAP3', 'score': 11.2}, {'connected_gene': 'GC01P023610', 'score': 0.34}, {'connected_gene': 'LOC729856', 'score': 0.28}]
chr1	GH01I023513	23513705	23514749	0.63	[{'connected_gene': 'ID3', 'score': 11.02}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.58}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'TCEA3', 'score': 6.21}, {'connected_gene': 'PIR36355', 'score': 0.44}, {'connected_gene': 'LOC101928163', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.37}]
chr1	GH01I023516	23516715	23517637	0.31	[{'connected_gene': 'ID3', 'score': 11.04}, {'connected_gene': 'ZNF436-AS1', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.58}, {'connected_gene': 'ENSG00000201405', 'score': 10.58}, {'connected_gene': 'LOC101928163', 'score': 0.77}, {'connected_gene': 'PIR36355', 'score': 0.44}, {'connected_gene': 'E2F2', 'score': 0.39}]
chr1	GH01I023553	23553135	23565306	2.67	[{'connected_gene': 'ID3', 'score': 560.77}, {'connected_gene': 'GC01M023559', 'score': 550.77}, {'connected_gene': 'GC01M023560', 'score': 550.77}, {'connected_gene': 'PIR53087', 'score': 550.77}, {'connected_gene': 'LOC105376859', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 37.59}, {'connected_gene': 'LINC01355', 'score': 26.48}, {'connected_gene': 'RPL11', 'score': 13.73}, {'connected_gene': 'MDS2', 'score': 12.2}, {'connected_gene': 'E2F2', 'score': 11.99}, {'connected_gene': 'PNRC2', 'score': 11.72}, {'connected_gene': 'ELOA', 'score': 11.4}, {'connected_gene': 'ASAP3', 'score': 10.91}, {'connected_gene': 'ZNF436-AS1', 'score': 9.15}, {'connected_gene': 'ZNF436', 'score': 7.6}, {'connected_gene': 'TCEA3', 'score': 5.49}]
chr1	GH01I023637	23637332	23638160	1.35	[{'connected_gene': 'MDS2', 'score': 11.87}, {'connected_gene': 'ID3', 'score': 11.75}, {'connected_gene': 'GC01P023610', 'score': 0.31}, {'connected_gene': 'LOC729856', 'score': 0.29}]
chr1	GH01I023634	23634389	23636213	1.59	[{'connected_gene': 'MDS2', 'score': 11.88}, {'connected_gene': 'ID3', 'score': 11.7}, {'connected_gene': 'GC01P023610', 'score': 0.31}, {'connected_gene': 'LOC729856', 'score': 0.29}]
chr1	GH01I023611	23611708	23616788	1.17	[{'connected_gene': 'MDS2', 'score': 12.31}, {'connected_gene': 'ID3', 'score': 12.08}, {'connected_gene': 'E2F2', 'score': 10.82}, {'connected_gene': 'GC01P023610', 'score': 0.77}, {'connected_gene': 'LOC729856', 'score': 0.22}]
chr1	GH01I023616	23616850	23622362	1.29	[{'connected_gene': 'MDS2', 'score': 12.15}, {'connected_gene': 'ID3', 'score': 11.87}, {'connected_gene': 'E2F2', 'score': 11.4}, {'connected_gene': 'GC01P023610', 'score': 0.44}, {'connected_gene': 'LOC729856', 'score': 0.23}]
chr1	GH01I023628	23628829	23630127	0.79	[{'connected_gene': 'MDS2', 'score': 17.04}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'E2F2', 'score': 11.42}, {'connected_gene': 'ASAP3', 'score': 11.2}, {'connected_gene': 'FUCA1', 'score': 5.31}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023623	23623835	23624928	0.79	[{'connected_gene': 'MDS2', 'score': 11.56}, {'connected_gene': 'ID3', 'score': 11.45}, {'connected_gene': 'E2F2', 'score': 11.39}, {'connected_gene': 'FUCA1', 'score': 5.09}, {'connected_gene': 'GC01P023610', 'score': 0.39}, {'connected_gene': 'LOC729856', 'score': 0.25}]
chr1	GH01I023604	23604054	23604587	0.31	[{'connected_gene': 'KDM1A', 'score': 16.65}, {'connected_gene': 'LINC01355', 'score': 13.49}, {'connected_gene': 'SRSF10', 'score': 12.76}, {'connected_gene': 'MDS2', 'score': 11.9}, {'connected_gene': 'ID3', 'score': 11.43}, {'connected_gene': 'ELOA', 'score': 11.34}, {'connected_gene': 'GC01P023610', 'score': 0.44}, {'connected_gene': 'PIR62098', 'score': 0.44}]
chr1	GH01I023572	23572937	23579599	1.55	[{'connected_gene': 'E2F2', 'score': 10.52}, {'connected_gene': 'ID3', 'score': 6.4}, {'connected_gene': 'MDS2', 'score': 0.44}, {'connected_gene': 'PIR53087', 'score': 0.37}]
chr1	GH01I023521	23521963	23535404	2.73	[{'connected_gene': 'E2F2', 'score': 550.77}, {'connected_gene': 'GC01P023526', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 32.7}, {'connected_gene': 'LINC01355', 'score': 25.51}, {'connected_gene': 'ASAP3', 'score': 11.46}, {'connected_gene': 'ID3', 'score': 10.58}, {'connected_gene': 'ZNF436', 'score': 10.56}, {'connected_gene': 'KDM1A', 'score': 10.43}, {'connected_gene': 'ELOA', 'score': 10.34}, {'connected_gene': 'TCEA3', 'score': 9.31}, {'connected_gene': 'PNRC2', 'score': 7.06}, {'connected_gene': 'ENSG00000271420', 'score': 5.98}, {'connected_gene': 'RPL11', 'score': 1.68}, {'connected_gene': 'LOC101928163', 'score': 0.44}]
chr1	GH01I023625	23625233	23626069	0.87	[{'connected_gene': 'ZNF436-AS1', 'score': 52.06}, {'connected_gene': 'HNRNPR', 'score': 41.56}, {'connected_gene': 'SRSF10', 'score': 34.94}, {'connected_gene': 'LINC01355', 'score': 33.99}, {'connected_gene': 'KDM1A', 'score': 31.86}, {'connected_gene': 'RPL11', 'score': 20.51}, {'connected_gene': 'PNRC2', 'score': 11.8}, {'connected_gene': 'MDS2', 'score': 11.56}, {'connected_gene': 'ID3', 'score': 11.44}, {'connected_gene': 'E2F2', 'score': 11.39}, {'connected_gene': 'FUCA1', 'score': 11.25}, {'connected_gene': 'ASAP3', 'score': 10.43}, {'connected_gene': 'ELOA', 'score': 9.96}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023626	23626382	23628085	1.22	[{'connected_gene': 'SRSF10', 'score': 48.12}, {'connected_gene': 'RPL11', 'score': 37.61}, {'connected_gene': 'PNRC2', 'score': 33.32}, {'connected_gene': 'ELOA', 'score': 29.87}, {'connected_gene': 'LINC01355', 'score': 22.07}, {'connected_gene': 'FUCA1', 'score': 14.52}, {'connected_gene': 'HNRNPR', 'score': 13.43}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'MDS2', 'score': 11.89}, {'connected_gene': 'E2F2', 'score': 11.42}, {'connected_gene': 'ASAP3', 'score': 11.2}, {'connected_gene': 'KDM1A', 'score': 9.89}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023606	23606434	23608900	0.6	[{'connected_gene': 'SRSF10', 'score': 14.51}, {'connected_gene': 'PNRC2', 'score': 13.08}, {'connected_gene': 'RPL11', 'score': 12.68}, {'connected_gene': 'MDS2', 'score': 11.87}, {'connected_gene': 'ID3', 'score': 11.42}, {'connected_gene': 'ELOA', 'score': 10.98}, {'connected_gene': 'GC01P023610', 'score': 0.77}, {'connected_gene': 'PIR62098', 'score': 0.44}]
chr1	GH01I023772	23772096	23772600	1.02	[{'connected_gene': 'PIR34347', 'score': 550.77}, {'connected_gene': 'ELOA', 'score': 12.23}, {'connected_gene': 'ID3', 'score': 9.96}, {'connected_gene': 'ELOA-AS1', 'score': 0.44}]
chr1	GH01I023609	23609729	23611186	0.4	[{'connected_gene': 'GC01P023610', 'score': 550.77}, {'connected_gene': 'MDS2', 'score': 12.33}, {'connected_gene': 'ID3', 'score': 12.08}, {'connected_gene': 'E2F2', 'score': 10.73}, {'connected_gene': 'LOC729856', 'score': 0.22}]
chr1	GH01I023506	23506849	23506998	0.51	[{'connected_gene': 'PIR36355', 'score': 550.77}, {'connected_gene': 'E2F2', 'score': 12.55}, {'connected_gene': 'ID3', 'score': 10.98}, {'connected_gene': 'ASAP3', 'score': 0.34}]
chr1	GH01I023589	23589002	23603629	1.7	[{'connected_gene': 'PIR62098', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 26.64}, {'connected_gene': 'LINC01355', 'score': 21.08}, {'connected_gene': 'E2F2', 'score': 12.7}, {'connected_gene': 'ELOA', 'score': 12.52}, {'connected_gene': 'HNRNPR', 'score': 12.51}, {'connected_gene': 'PNRC2', 'score': 12.16}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'ZNF436', 'score': 11.6}, {'connected_gene': 'RPL11', 'score': 11.32}, {'connected_gene': 'ASAP3', 'score': 10.29}, {'connected_gene': 'ZNF436-AS1', 'score': 10.21}, {'connected_gene': 'ENSG00000201405', 'score': 10.21}, {'connected_gene': 'KDM1A', 'score': 10.09}, {'connected_gene': 'STPG1', 'score': 4.78}, {'connected_gene': 'CNR2', 'score': 1.79}, {'connected_gene': 'MDS2', 'score': 0.39}]