PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000504030	[[113845602, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113861035]]	[[113846047, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113860485]]
ENST00000375498	[[113845796, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113861032]]	[[113846029, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113860485]]
ENST00000355556	[[113845796, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113861032]]	[[113846029, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113860485]]
ENST00000506841	[[113845909, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113861035]]	[[113846047, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113860485]]
ENST00000510849	[[113846007, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113857239, 113857450], [113857546, 113857768], [113860186, 113860554]]	[[113846047, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113857239, 113857412]]
ENST00000535865	[[113846007, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113857239, 113857450], [113857546, 113857768], [113860186, 113860554]]	[[113857302, 113857450], [113857546, 113857768], [113860186, 113860485]]
ENST00000299961	[[113848221, 113848298], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113861032]]	[[113848276, 113848298], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113860485]]
ENST00000502622	[[113851757, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857633]]	None
NR_046363	[[113845796, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113857239, 113857450], [113857546, 113857768], [113860186, 113861035]]	None
NM_000869	[[113845796, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113861035]]	[[113846029, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113860485]]
NM_213621	[[113845796, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113861035]]	[[113846029, 113846114], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857768], [113860186, 113860485]]
NM_001161772	[[113848221, 113848298], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113861035]]	[[113848276, 113848298], [113848492, 113848644], [113849954, 113849999], [113851924, 113852034], [113853841, 113854011], [113856736, 113856897], [113857239, 113857450], [113857546, 113857768], [113860186, 113860485]]

Promoter

Chrom	Start	End	Description
chr11	113848216	113848228	CAGE_peak_2_at_HTR3A_5end
chr11	113848250	113848255	CAGE_peak_5_at_HTR3A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I113923	113923532	113923932	0.22	[{'connected_gene': 'HTR3B', 'score': 0.34}, {'connected_gene': 'HTR3A', 'score': 0.23}]
chr11	GH11I113905	113905644	113907297	0.91	[{'connected_gene': 'USP28', 'score': 11.49}, {'connected_gene': 'ENSG00000270179', 'score': 11.42}, {'connected_gene': 'HTR3A', 'score': 10.92}, {'connected_gene': 'RNU6-1107P', 'score': 10.15}, {'connected_gene': 'HTR3B', 'score': 0.44}]
chr11	GH11I113961	113961001	113961400	0.2	[{'connected_gene': 'NNMT', 'score': 9.99}, {'connected_gene': 'HTR3A', 'score': 0.39}, {'connected_gene': 'HTR3B', 'score': 0.21}]
chr11	GH11I114174	114174771	114188454	1.47	[{'connected_gene': 'NNMT', 'score': 11.56}, {'connected_gene': 'HTR3A', 'score': 10.19}, {'connected_gene': 'ZBTB16', 'score': 7.76}, {'connected_gene': 'LOC101928875', 'score': 0.44}, {'connected_gene': 'PIR38575', 'score': 0.37}]
chr11	GH11I114108	114108626	114112054	1.03	[{'connected_gene': 'NNMT', 'score': 10.76}, {'connected_gene': 'HTR3A', 'score': 9.76}, {'connected_gene': 'ENSG00000270179', 'score': 5.48}, {'connected_gene': 'GC11M114060', 'score': 0.25}, {'connected_gene': 'ZBTB16', 'score': 0.23}, {'connected_gene': 'LOC101928875', 'score': 0.21}]
chr11	GH11I114112	114112326	114118091	0.43	[{'connected_gene': 'NNMT', 'score': 10.72}, {'connected_gene': 'HTR3A', 'score': 9.31}, {'connected_gene': 'ENSG00000270179', 'score': 5.37}, {'connected_gene': 'GC11M114060', 'score': 0.23}, {'connected_gene': 'LOC101928875', 'score': 0.22}, {'connected_gene': 'ZBTB16', 'score': 0.22}]
chr11	GH11I113896	113895519	113895668	0.59	[{'connected_gene': 'NNMT', 'score': 10.88}, {'connected_gene': 'RNU6-1107P', 'score': 10.58}, {'connected_gene': 'HTR3A', 'score': 10.47}, {'connected_gene': 'HTR3B', 'score': 0.77}, {'connected_gene': 'USP28', 'score': 0.34}]
chr11	GH11I113895	113895939	113896720	0.65	[{'connected_gene': 'NNMT', 'score': 10.88}, {'connected_gene': 'RNU6-1107P', 'score': 10.58}, {'connected_gene': 'HTR3A', 'score': 10.47}, {'connected_gene': 'ATF4P4', 'score': 6.48}, {'connected_gene': 'DRD2', 'score': 4.2}, {'connected_gene': 'HTR3B', 'score': 0.77}, {'connected_gene': 'USP28', 'score': 0.34}]
chr11	GH11I113942	113942201	113942400	0.31	[{'connected_gene': 'HTR3A', 'score': 0.29}, {'connected_gene': 'HTR3B', 'score': 0.26}]
chr11	GH11I113957	113957815	113957954	0.22	[{'connected_gene': 'HTR3A', 'score': 0.37}, {'connected_gene': 'HTR3B', 'score': 0.22}]
chr11	GH11I113932	113932899	113933068	0.31	[{'connected_gene': 'HTR3A', 'score': 11.27}, {'connected_gene': 'NNMT', 'score': 10.28}, {'connected_gene': 'HTR3B', 'score': 0.29}]
chr11	GH11I113952	113952001	113953004	0.82	[{'connected_gene': 'HTR3A', 'score': 12.63}, {'connected_gene': 'NNMT', 'score': 10.35}, {'connected_gene': 'RNU6-1107P', 'score': 9.52}, {'connected_gene': 'ATF4P4', 'score': 6.99}, {'connected_gene': 'HTR3B', 'score': 0.23}]
chr11	GH11I113976	113976787	113978470	0.96	[{'connected_gene': 'HTR3A', 'score': 550.77}, {'connected_gene': 'DRD2', 'score': 6.36}, {'connected_gene': 'GC11M113987', 'score': 0.37}]
chr11	GH11I113974	113974239	113975600	1.57	[{'connected_gene': 'HTR3A', 'score': 550.77}, {'connected_gene': 'RBM7', 'score': 5.27}, {'connected_gene': 'DRD2', 'score': 4.7}, {'connected_gene': 'GC11M113987', 'score': 0.37}]
chr11	GH11I113847	113847752	113851525	0.76	[{'connected_gene': 'ATF4P4', 'score': 21.25}, {'connected_gene': 'USP28', 'score': 11.43}, {'connected_gene': 'HTR3A', 'score': 9.1}, {'connected_gene': 'LRRC37A13P', 'score': 5.56}, {'connected_gene': 'DRD2', 'score': 4.38}, {'connected_gene': 'GC11P113860', 'score': 0.44}, {'connected_gene': 'LOC100421976', 'score': 0.31}]
chr11	GH11I114026	114026519	114026668	0.56	[{'connected_gene': 'GC11P114027', 'score': 550.77}, {'connected_gene': 'NNMT', 'score': 11.0}, {'connected_gene': 'HTR3A', 'score': 10.95}, {'connected_gene': 'GC11P114024', 'score': 0.77}]
chr11	GH11I113994	113994439	113994588	0.54	[{'connected_gene': 'GC11M113987', 'score': 550.77}, {'connected_gene': 'NNMT', 'score': 12.07}, {'connected_gene': 'HTR3A', 'score': 0.37}]
chr11	GH11I114262	114262799	114263850	0.69	[{'connected_gene': 'GC11M114263', 'score': 550.77}, {'connected_gene': 'HTR3A', 'score': 10.19}, {'connected_gene': 'RNU6-1107P', 'score': 9.15}, {'connected_gene': 'NNMT', 'score': 4.63}, {'connected_gene': 'ENSG00000256947', 'score': 0.16}]