PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296503	[[174252845, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254820], [174255422, 174256276]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]
ENST00000438704	[[174252851, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254823]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]
ENST00000446922	[[174252851, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254820], [174255396, 174255542]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]
ENST00000511316	[[174252855, 174254365], [174254650, 174254820], [174255422, 174255583]]	None
ENST00000506267	[[174254039, 174254146], [174254219, 174254365], [174254650, 174254820], [174255194, 174255400]]	[[174254039, 174254146], [174254219, 174254365], [174254650, 174254800]]
NM_001130689	[[174252526, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254920]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]
NM_001130688	[[174252526, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254820], [174255396, 174255509]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]
NM_002129	[[174252526, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254820], [174255422, 174255595]]	[[174253230, 174253389], [174253971, 174254146], [174254219, 174254365], [174254650, 174254800]]

Promoter

Chrom	Start	End	Description
chr4	174254691	174254709	CAGE_peak_7_at_HMGB2_5end
chr4	174254760	174254775	CAGE_peak_4_at_HMGB2_5end
chr4	174254823	174254862	CAGE_peak_5_at_HMGB2_5end
chr4	174254864	174254925	CAGE_peak_3_at_HMGB2_5end
chr4	174255494	174255516	CAGE_peak_1_at_HMGB2_5end
chr4	174255536	174255547	CAGE_peak_2_at_HMGB2_5end
chr4	174256283	174256303	CAGE_peak_6_at_HMGB2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I173369	173369000	173373201	2.28	[{'connected_gene': 'SAP30', 'score': 550.77}, {'connected_gene': 'LOC105377540', 'score': 550.77}, {'connected_gene': 'HMGB2', 'score': 13.07}, {'connected_gene': 'ENSG00000248774', 'score': 13.05}, {'connected_gene': 'SCRG1', 'score': 12.41}, {'connected_gene': 'CEP44', 'score': 9.11}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'LOC101928383', 'score': 0.39}, {'connected_gene': 'GC04M173250', 'score': 0.06}]
chr4	GH04I173414	173414801	173417599	1.48	[{'connected_gene': 'CEP44', 'score': 31.14}, {'connected_gene': 'HMGB2', 'score': 24.74}, {'connected_gene': 'ENSG00000261646', 'score': 20.77}, {'connected_gene': 'HAND2-AS1', 'score': 10.2}, {'connected_gene': 'SAP30', 'score': 1.34}, {'connected_gene': 'RPL5P11', 'score': 0.77}, {'connected_gene': 'LOC101928383', 'score': 0.29}, {'connected_gene': 'SCRG1', 'score': 0.21}, {'connected_gene': 'GC04M173250', 'score': 0.07}]
chr4	GH04I173374	173374001	173374200	0.31	[{'connected_gene': 'HMGB2', 'score': 13.07}, {'connected_gene': 'ENSG00000248774', 'score': 13.05}, {'connected_gene': 'SCRG1', 'score': 12.41}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'CEP44', 'score': 9.1}, {'connected_gene': 'SAP30', 'score': 0.77}, {'connected_gene': 'LOC105377540', 'score': 0.77}, {'connected_gene': 'LOC101928383', 'score': 0.39}, {'connected_gene': 'GC04M173250', 'score': 0.06}]
chr4	GH04I173366	173366886	173368445	0.85	[{'connected_gene': 'HMGB2', 'score': 13.58}, {'connected_gene': 'ENSG00000248774', 'score': 13.56}, {'connected_gene': 'SCRG1', 'score': 12.79}, {'connected_gene': 'RNU6-1096P', 'score': 10.19}, {'connected_gene': 'CEP44', 'score': 9.11}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'SAP30', 'score': 0.77}, {'connected_gene': 'LOC105377540', 'score': 0.77}, {'connected_gene': 'GC04P173358', 'score': 0.44}, {'connected_gene': 'GC04M173250', 'score': 0.06}]
chr4	GH04I173331	173331886	173336813	2.08	[{'connected_gene': 'LOC105377541', 'score': 550.77}, {'connected_gene': 'GC04P173336', 'score': 550.77}, {'connected_gene': 'HMGB2', 'score': 550.77}, {'connected_gene': 'CEP44', 'score': 33.36}, {'connected_gene': 'SCRG1', 'score': 10.95}, {'connected_gene': 'ENSG00000248774', 'score': 0.77}, {'connected_gene': 'GC04M173250', 'score': 0.05}]
chr4	GH04I174120	174120001	174120801	1.57	[{'connected_gene': 'LINC02268', 'score': 34.87}, {'connected_gene': 'CEP44', 'score': 11.39}, {'connected_gene': 'HMGB2', 'score': 11.2}, {'connected_gene': 'ENSG00000261646', 'score': 10.78}, {'connected_gene': 'HAND2-AS1', 'score': 10.09}, {'connected_gene': 'GC04P174110', 'score': 0.44}, {'connected_gene': 'ENSG00000250957', 'score': 0.29}]