PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000504776	[[98104353, 98104566], [98106301, 98106377], [98109659, 98109910], [98115283, 98115623]]	None
ENST00000505265	[[98104997, 98105329], [98106056, 98106170]]	None
ENST00000434027	[[98104997, 98105329], [98106056, 98106377], [98109656, 98109910], [98115283, 98116889]]	None
ENST00000308234	[[98104998, 98105329], [98106301, 98106377], [98109656, 98109910], [98115283, 98115792], [98128788, 98132198]]	[[98106372, 98106377], [98109656, 98109910], [98115283, 98115792], [98128788, 98129457]]
ENST00000507054	[[98105139, 98105329], [98106301, 98106377], [98108645, 98108679]]	None
ENST00000513185	[[98109338, 98109910], [98115283, 98115792], [98128788, 98129759]]	[[98109774, 98109910], [98115283, 98115792], [98128788, 98129457]]
ENST00000508978	[[98115548, 98115792], [98134164, 98134347]]	None
NM_001012761	[[98104998, 98105329], [98106301, 98106377], [98109656, 98109910], [98115283, 98115792], [98128788, 98132198]]	[[98106372, 98106377], [98109656, 98109910], [98115283, 98115792], [98128788, 98129457]]

Promoter

Chrom	Start	End	Description
chr5	98104312	98104343	CAGE_peak_13_at_RGMB_5end
chr5	98104978	98105010	CAGE_peak_5_at_RGMB_5end
chr5	98105021	98105033	CAGE_peak_11_at_RGMB_5end
chr5	98105080	98105096	CAGE_peak_9_at_RGMB_5end
chr5	98105123	98105126	CAGE_peak_26_at_RGMB_5end
chr5	98105127	98105145	CAGE_peak_8_at_RGMB_5end
chr5	98105219	98105258	CAGE_peak_6_at_RGMB_5end
chr5	98105268	98105295	CAGE_peak_2_at_RGMB_5end
chr5	98109322	98109350	CAGE_peak_4_at_RGMB_5end
chr5	98109355	98109380	CAGE_peak_1_at_RGMB_5end
chr5	98109395	98109407	CAGE_peak_7_at_RGMB_5end
chr5	98109470	98109495	CAGE_peak_3_at_RGMB_5end
chr5	98109731	98109740	CAGE_peak_19_at_RGMB_5end
chr5	98129974	98129990	CAGE_peak_21_at_RGMB_5end
chr5	98129998	98130012	CAGE_peak_22_at_RGMB_5end
chr5	98130065	98130086	CAGE_peak_10_at_RGMB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I098767	98767391	98777693	2.28	[{'connected_gene': 'RGMB-AS1', 'score': 583.28}, {'connected_gene': 'RGMB', 'score': 555.52}, {'connected_gene': 'CHD1', 'score': 39.65}]
chr5	GH05I098424	98424311	98425933	0.4	[{'connected_gene': 'RGMB-AS1', 'score': 6.19}, {'connected_gene': 'RGMB', 'score': 4.1}, {'connected_gene': 'MTCO1P24', 'score': 0.39}, {'connected_gene': 'CTBP2P4', 'score': 0.1}]
chr5	GH05I098839	98839401	98839999	0.69	[{'connected_gene': 'RGMB-AS1', 'score': 16.47}, {'connected_gene': 'RGMB', 'score': 11.17}, {'connected_gene': 'LOC105379099', 'score': 0.77}, {'connected_gene': 'CSNK1A1P3', 'score': 0.44}]
chr5	GH05I098789	98789240	98790879	0.31	[{'connected_gene': 'RGMB-AS1', 'score': 25.5}, {'connected_gene': 'ENSG00000279232', 'score': 0.44}, {'connected_gene': 'RGMB', 'score': 0.34}]
chr5	GH05I098762	98762503	98764066	0.83	[{'connected_gene': 'RGMB-AS1', 'score': 32.7}, {'connected_gene': 'RGMB', 'score': 4.65}, {'connected_gene': 'PIR40029', 'score': 0.18}]
chr5	GH05I098750	98750817	98750966	0.38	[{'connected_gene': 'RGMB-AS1', 'score': 11.46}, {'connected_gene': 'RGMB', 'score': 0.37}, {'connected_gene': 'PIR40029', 'score': 0.19}]
chr5	GH05I098779	98779057	98780000	1.22	[{'connected_gene': 'RGMB-AS1', 'score': 0.44}, {'connected_gene': 'RGMB', 'score': 0.39}, {'connected_gene': 'ENSG00000279232', 'score': 0.37}]
chr5	GH05I098752	98752123	98753932	0.38	[{'connected_gene': 'RGMB-AS1', 'score': 43.08}, {'connected_gene': 'RGMB', 'score': 4.58}, {'connected_gene': 'PIR40029', 'score': 0.19}]
chr5	GH05I098785	98785087	98785721	0.2	[{'connected_gene': 'RGMB-AS1', 'score': 0.39}, {'connected_gene': 'ENSG00000279232', 'score': 0.39}, {'connected_gene': 'RGMB', 'score': 0.37}]
chr5	GH05I098786	98786081	98787989	0.69	[{'connected_gene': 'RGMB-AS1', 'score': 9.67}, {'connected_gene': 'ENSG00000279232', 'score': 0.44}, {'connected_gene': 'RGMB', 'score': 0.37}]
chr5	GH05I098782	98782496	98783594	0.2	[{'connected_gene': 'RGMB-AS1', 'score': 21.61}, {'connected_gene': 'ENSG00000279232', 'score': 0.39}, {'connected_gene': 'RGMB', 'score': 0.39}]
chr5	GH05I098748	98748650	98749573	0.2	[{'connected_gene': 'RGMB-AS1', 'score': 11.46}, {'connected_gene': 'RGMB', 'score': 4.58}, {'connected_gene': 'PIR40029', 'score': 0.2}]
chr5	GH05I099019	99019258	99022562	1.17	[{'connected_gene': 'RGMB-AS1', 'score': 15.87}, {'connected_gene': 'CHD1', 'score': 11.35}, {'connected_gene': 'LINC02062', 'score': 11.35}, {'connected_gene': 'RGMB', 'score': 10.11}, {'connected_gene': 'PIR38453', 'score': 0.39}, {'connected_gene': 'GC05P099011', 'score': 0.39}, {'connected_gene': 'PIR33197', 'score': 0.09}]
chr5	GH05I099032	99032117	99034611	1.07	[{'connected_gene': 'RGMB-AS1', 'score': 15.18}, {'connected_gene': 'CHD1', 'score': 11.34}, {'connected_gene': 'LINC02062', 'score': 11.34}, {'connected_gene': 'RGMB', 'score': 10.15}, {'connected_gene': 'PIR38453', 'score': 0.34}, {'connected_gene': 'GC05P099011', 'score': 0.34}, {'connected_gene': 'PIR33197', 'score': 0.1}]
chr5	GH05I098401	98401110	98402486	0.4	[{'connected_gene': 'MRPS35P2', 'score': 550.77}, {'connected_gene': 'RGMB', 'score': 4.45}, {'connected_gene': 'KRT8P32', 'score': 0.44}]
chr5	GH05I098413	98413350	98417602	0.97	[{'connected_gene': 'RGMB', 'score': 8.31}, {'connected_gene': 'RGMB-AS1', 'score': 6.91}, {'connected_gene': 'MTCO1P24', 'score': 0.77}, {'connected_gene': 'CTBP2P4', 'score': 0.1}]
chr5	GH05I098463	98463840	98465924	0.38	[{'connected_gene': 'RGMB', 'score': 6.34}, {'connected_gene': 'RGMB-AS1', 'score': 4.04}, {'connected_gene': 'MTCO1P24', 'score': 0.23}, {'connected_gene': 'CTBP2P4', 'score': 0.14}]
chr5	GH05I098466	98466344	98469505	0.66	[{'connected_gene': 'RGMB', 'score': 6.18}, {'connected_gene': 'RGMB-AS1', 'score': 4.14}, {'connected_gene': 'MTCO1P24', 'score': 0.22}, {'connected_gene': 'CTBP2P4', 'score': 0.14}]
chr5	GH05I098742	98742777	98742926	0.31	[{'connected_gene': 'RGMB', 'score': 11.17}, {'connected_gene': 'RGMB-AS1', 'score': 10.71}, {'connected_gene': 'PIR40029', 'score': 0.21}]
chr5	GH05I098338	98338559	98342982	0.43	[{'connected_gene': 'RGMB', 'score': 5.8}, {'connected_gene': 'LOC402221', 'score': 0.77}, {'connected_gene': 'KRT8P32', 'score': 0.23}]
chr5	GH05I098459	98459598	98460977	0.2	[{'connected_gene': 'RGMB', 'score': 6.37}, {'connected_gene': 'MTCO1P24', 'score': 0.25}, {'connected_gene': 'CTBP2P4', 'score': 0.13}]
chr5	GH05I098428	98428632	98429439	0.66	[{'connected_gene': 'RGMB', 'score': 5.54}, {'connected_gene': 'MTCO1P24', 'score': 0.37}, {'connected_gene': 'CTBP2P4', 'score': 0.11}]
chr5	GH05I098432	98432436	98433083	0.31	[{'connected_gene': 'RGMB', 'score': 5.22}, {'connected_gene': 'MTCO1P24', 'score': 0.34}, {'connected_gene': 'CTBP2P4', 'score': 0.11}]
chr5	GH05I098453	98453880	98456425	1.19	[{'connected_gene': 'RGMB', 'score': 5.69}, {'connected_gene': 'MTCO1P24', 'score': 0.26}, {'connected_gene': 'CTBP2P4', 'score': 0.13}]
chr5	GH05I098475	98475645	98477589	0.31	[{'connected_gene': 'RGMB', 'score': 6.17}, {'connected_gene': 'MTCO1P24', 'score': 0.21}, {'connected_gene': 'CTBP2P4', 'score': 0.15}]
chr5	GH05I098457	98457992	98458266	0.63	[{'connected_gene': 'RGMB', 'score': 6.18}, {'connected_gene': 'MTCO1P24', 'score': 0.25}, {'connected_gene': 'CTBP2P4', 'score': 0.13}]
chr5	GH05I098755	98755517	98755666	0.63	[{'connected_gene': 'RGMB', 'score': 0.39}, {'connected_gene': 'PIR40029', 'score': 0.18}]
chr5	GH05I098796	98796000	98796935	1.12	[{'connected_gene': 'ENSG00000279232', 'score': 550.77}, {'connected_gene': 'RGMB-AS1', 'score': 12.03}, {'connected_gene': 'RGMB', 'score': 11.71}, {'connected_gene': 'CSNK1A1P3', 'score': 0.28}]
chr5	GH05I098791	98791085	98791877	0.51	[{'connected_gene': 'ENSG00000279232', 'score': 0.77}, {'connected_gene': 'RGMB-AS1', 'score': 0.37}, {'connected_gene': 'RGMB', 'score': 0.34}]
chr5	GH05I098680	98680137	98680286	0.31	[{'connected_gene': 'PIR40029', 'score': 550.77}, {'connected_gene': 'DDX18P4', 'score': 550.77}, {'connected_gene': 'RGMB', 'score': 0.17}]
chr5	GH05I098307	98307214	98316030	1.38	[{'connected_gene': 'GC05M098310', 'score': 550.77}, {'connected_gene': 'RGMB', 'score': 3.21}, {'connected_gene': 'LOC402221', 'score': 0.31}]