PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000513496	[[41925355, 41925600], [41929798, 41930019], [41934047, 41934123], [41934234, 41934411]]	[[41925411, 41925600], [41929798, 41929804]]
ENST00000296812	[[41925355, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41935187]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934436]]
ENST00000281623	[[41925355, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41939542, 41939718], [41941293, 41941845]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41939542, 41939718], [41941293, 41941383]]
ENST00000504463	[[41925400, 41925600], [41927114, 41927350], [41928619, 41928793], [41929798, 41930019]]	[[41925411, 41925600], [41927114, 41927350], [41928619, 41928659]]
ENST00000509134	[[41925402, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41941293, 41941670]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41941293, 41941313]]
ENST00000506496	[[41925422, 41925600], [41929798, 41930257]]	None
ENST00000505566	[[41939399, 41939718], [41941293, 41941672]]	None
NM_001297437	[[41925353, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41941293, 41941672]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41941293, 41941313]]
NM_033484	[[41925355, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41935187]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934436]]
NM_012176	[[41925355, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41939542, 41939718], [41941293, 41941672]]	[[41925411, 41925600], [41927114, 41927350], [41929798, 41930019], [41934047, 41934123], [41934234, 41934410], [41939542, 41939718], [41941293, 41941383]]

Promoter

Chrom	Start	End	Description
chr5	41925325	41925416	CAGE_peak_1_at_FBXO4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I041844	41844939	41844953	0.35	[{'connected_gene': 'OXCT1', 'score': 3.87}, {'connected_gene': 'FBXO4', 'score': 1.32}, {'connected_gene': 'LOC102723752', 'score': 0.34}, {'connected_gene': 'GC05M041733', 'score': 0.14}]
chr5	GH05I041869	41869015	41871603	1.99	[{'connected_gene': 'OXCT1', 'score': 556.04}, {'connected_gene': 'LOC102723752', 'score': 550.77}, {'connected_gene': 'OXCT1-AS1', 'score': 550.77}, {'connected_gene': 'FBXO4', 'score': 20.72}, {'connected_gene': 'C5orf51', 'score': 11.54}]
chr5	GH05I041871	41871697	41872048	0.89	[{'connected_gene': 'OXCT1', 'score': 550.77}, {'connected_gene': 'OXCT1-AS1', 'score': 550.77}, {'connected_gene': 'C5orf51', 'score': 11.54}, {'connected_gene': 'FBXO4', 'score': 10.79}, {'connected_gene': 'LOC102723752', 'score': 0.77}, {'connected_gene': 'RPS2P22', 'score': 0.34}]
chr5	GH05I041903	41903218	41905747	2.13	[{'connected_gene': 'C5orf51', 'score': 560.51}, {'connected_gene': 'FBXO4', 'score': 56.18}, {'connected_gene': 'SERBP1P6', 'score': 21.48}, {'connected_gene': 'OXCT1-AS1', 'score': 18.16}, {'connected_gene': 'CCDC152', 'score': 4.1}, {'connected_gene': 'PIR36450', 'score': 0.39}, {'connected_gene': 'GC05P041926', 'score': 0.39}]
chr5	GH05I041924	41924200	41926341	2.1	[{'connected_gene': 'FBXO4', 'score': 561.44}, {'connected_gene': 'OXCT1', 'score': 12.2}, {'connected_gene': 'RPSAP38', 'score': 0.31}]
chr5	GH05I041856	41856759	41856928	0.9	[{'connected_gene': 'FBXO4', 'score': 10.99}, {'connected_gene': 'C5orf51', 'score': 10.69}, {'connected_gene': 'OXCT1', 'score': 0.39}, {'connected_gene': 'LOC102723752', 'score': 0.39}, {'connected_gene': 'GC05M041733', 'score': 0.13}]
chr5	GH05I042583	42583016	42585428	0.92	[{'connected_gene': 'FBXO4', 'score': 4.84}, {'connected_gene': 'GHR', 'score': 4.15}, {'connected_gene': 'GC05M042543', 'score': 0.31}, {'connected_gene': 'GC05P042548', 'score': 0.28}]
chr5	GH05I042576	42576498	42581523	0.62	[{'connected_gene': 'FBXO4', 'score': 4.77}, {'connected_gene': 'GC05P042548', 'score': 0.29}, {'connected_gene': 'GC05M042543', 'score': 0.29}, {'connected_gene': 'GHR', 'score': 0.1}]
chr5	GH05I041921	41921021	41921958	0.57	[{'connected_gene': 'LOC100419715', 'score': 550.77}, {'connected_gene': 'PIR60775', 'score': 550.77}, {'connected_gene': 'GC05P041927', 'score': 550.77}, {'connected_gene': 'OXCT1', 'score': 18.13}, {'connected_gene': 'OXCT1-AS1', 'score': 10.75}, {'connected_gene': 'FBXO4', 'score': 0.77}, {'connected_gene': 'C5orf51', 'score': 0.37}]
chr5	GH05I041922	41922000	41922201	0.46	[{'connected_gene': 'LOC100419715', 'score': 550.77}, {'connected_gene': 'PIR60775', 'score': 550.77}, {'connected_gene': 'GC05P041927', 'score': 550.77}, {'connected_gene': 'OXCT1', 'score': 10.75}, {'connected_gene': 'OXCT1-AS1', 'score': 10.75}, {'connected_gene': 'FBXO4', 'score': 0.77}]
chr5	GH05I042483	42483147	42486633	0.38	[{'connected_gene': 'GC05P042486', 'score': 550.77}, {'connected_gene': 'GC05P042484', 'score': 550.77}, {'connected_gene': 'GC05P042485', 'score': 550.77}, {'connected_gene': 'GC05P042487', 'score': 550.77}, {'connected_gene': 'GHR', 'score': 7.29}, {'connected_gene': 'FBXO4', 'score': 4.1}]