PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376753	[[11724180, 11724312], [11728712, 11729001], [11731322, 11731449], [11731984, 11732080], [11733333, 11733469], [11733671, 11734411]]	[[11728715, 11729001], [11731322, 11731449], [11731984, 11732080], [11733333, 11733469], [11733671, 11733908]]
ENST00000474239	[[11724542, 11724792], [11728712, 11729001], [11731322, 11731449], [11731984, 11732121]]	None
ENST00000449067	[[11728752, 11729001], [11731322, 11731449], [11733333, 11733469], [11733671, 11734087]]	[[11728752, 11729001], [11731322, 11731449], [11733333, 11733469], [11733671, 11733908]]
NM_018438	[[11724149, 11724312], [11728712, 11729001], [11731322, 11731449], [11731984, 11732080], [11733333, 11733469], [11733671, 11734411]]	[[11728715, 11729001], [11731322, 11731449], [11731984, 11732080], [11733333, 11733469], [11733671, 11733908]]

Promoter

Chrom	Start	End	Description
chr1	11724144	11724161	CAGE_peak_4_at_FBXO6_5end
chr1	11724167	11724197	CAGE_peak_2_at_FBXO6_5end
chr1	11724249	11724289	CAGE_peak_1_at_FBXO6_5end
chr1	11724407	11724431	CAGE_peak_3_at_FBXO6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I011978	11978437	11987026	2.78	[{'connected_gene': 'MFN2', 'score': 620.69}, {'connected_gene': 'ENSG00000226849', 'score': 21.95}, {'connected_gene': 'EXOSC10', 'score': 18.43}, {'connected_gene': 'MIIP', 'score': 18.04}, {'connected_gene': 'TNFRSF1B', 'score': 16.91}, {'connected_gene': 'PLOD1', 'score': 16.62}, {'connected_gene': 'CLCN6', 'score': 15.24}, {'connected_gene': 'TARDBP', 'score': 13.01}, {'connected_gene': 'KIAA2013', 'score': 11.56}, {'connected_gene': 'RNU5E-4P', 'score': 11.25}, {'connected_gene': 'RNU5E-1', 'score': 11.25}, {'connected_gene': 'NPPB', 'score': 10.29}, {'connected_gene': 'MTHFR', 'score': 7.41}, {'connected_gene': 'TNFRSF8', 'score': 6.4}, {'connected_gene': 'AGTRAP', 'score': 5.2}, {'connected_gene': 'FBXO6', 'score': 3.22}, {'connected_gene': 'ENSG00000270914', 'score': 0.29}]
chr1	GH01I012156	12156985	12164264	1.79	[{'connected_gene': 'TNFRSF1B', 'score': 35.67}, {'connected_gene': 'MTHFR', 'score': 10.03}, {'connected_gene': 'TNFRSF8', 'score': 8.29}, {'connected_gene': 'CLCN6', 'score': 7.03}, {'connected_gene': 'AGTRAP', 'score': 5.6}, {'connected_gene': 'FBXO6', 'score': 2.41}, {'connected_gene': 'MFN2', 'score': 1.87}, {'connected_gene': 'MIR7846', 'score': 0.44}, {'connected_gene': 'RPL23AP89', 'score': 0.18}]
chr1	GH01I012140	12140104	12154599	1.73	[{'connected_gene': 'TNFRSF1B', 'score': 24.03}, {'connected_gene': 'MTHFR', 'score': 9.71}, {'connected_gene': 'TNFRSF8', 'score': 7.53}, {'connected_gene': 'CLCN6', 'score': 7.18}, {'connected_gene': 'AGTRAP', 'score': 4.94}, {'connected_gene': 'NPPA-AS1', 'score': 4.65}, {'connected_gene': 'FBXO6', 'score': 2.13}, {'connected_gene': 'MFN2', 'score': 1.71}, {'connected_gene': 'MIR7846', 'score': 0.37}, {'connected_gene': 'RPL23AP89', 'score': 0.2}]
chr1	GH01I011738	11738861	11739064	0.83	[{'connected_gene': 'TNFRSF1B', 'score': 14.74}, {'connected_gene': 'MAD2L2', 'score': 12.04}, {'connected_gene': 'DRAXIN', 'score': 12.02}, {'connected_gene': 'C1orf127', 'score': 9.14}, {'connected_gene': 'MTHFR', 'score': 5.44}, {'connected_gene': 'CLCN6', 'score': 5.44}, {'connected_gene': 'FBXO6', 'score': 4.42}, {'connected_gene': 'AGTRAP', 'score': 3.18}, {'connected_gene': 'TNFRSF8', 'score': 2.54}, {'connected_gene': 'MFN2', 'score': 1.81}, {'connected_gene': 'GC01P011758', 'score': 0.37}]
chr1	GH01I011735	11735202	11738570	2.53	[{'connected_gene': 'AGTRAP', 'score': 570.93}, {'connected_gene': 'TARDBP', 'score': 19.36}, {'connected_gene': 'TNFRSF1B', 'score': 14.62}, {'connected_gene': 'ENSG00000226849', 'score': 12.73}, {'connected_gene': 'MAD2L2', 'score': 12.04}, {'connected_gene': 'DRAXIN', 'score': 12.02}, {'connected_gene': 'EXOSC10', 'score': 11.55}, {'connected_gene': 'C1orf127', 'score': 9.14}, {'connected_gene': 'MTHFR', 'score': 4.68}, {'connected_gene': 'CLCN6', 'score': 4.13}, {'connected_gene': 'TNFRSF8', 'score': 2.69}, {'connected_gene': 'FBXO6', 'score': 2.63}, {'connected_gene': 'MFN2', 'score': 1.62}, {'connected_gene': 'GC01P011758', 'score': 0.37}]
chr1	GH01I011663	11663624	11665424	1.95	[{'connected_gene': 'FBXO6', 'score': 564.76}, {'connected_gene': 'FBXO44', 'score': 6.28}, {'connected_gene': 'MIIP', 'score': 4.99}, {'connected_gene': 'PIR43631', 'score': 0.39}]
chr1	GH01I011652	11652495	11655556	1.88	[{'connected_gene': 'FBXO2', 'score': 566.86}, {'connected_gene': 'FBXO44', 'score': 550.77}, {'connected_gene': 'FBXO6', 'score': 6.01}, {'connected_gene': 'GC01M011650', 'score': 0.77}]
chr1	GH01I011680	11680200	11683663	2.22	[{'connected_gene': 'MAD2L2', 'score': 564.27}, {'connected_gene': 'FBXO6', 'score': 8.39}, {'connected_gene': 'DRAXIN', 'score': 0.77}, {'connected_gene': 'PIR43631', 'score': 0.44}]
chr1	GH01I011670	11670222	11672622	1.01	[{'connected_gene': 'MAD2L2', 'score': 12.51}, {'connected_gene': 'FBXO6', 'score': 8.85}, {'connected_gene': 'PIR43631', 'score': 0.77}]
chr1	GH01I011676	11676255	11677875	0.65	[{'connected_gene': 'PIR43631', 'score': 550.77}, {'connected_gene': 'FBXO6', 'score': 13.59}, {'connected_gene': 'DRAXIN', 'score': 0.44}, {'connected_gene': 'MAD2L2', 'score': 0.39}]