Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000563599 [[46723554, 46723682], [46724969, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46731423]] [[46723617, 46723682], [46724969, 46725015]]
ENST00000219097 [[46723557, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46732306]] [[46723617, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46731497]]
ENST00000569239 [[46723570, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46728431]] None
ENST00000563306 [[46723593, 46723741], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46730131]] None
ENST00000568364 [[46723608, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729928, 46729997], [46731369, 46731730]] [[46723617, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729928, 46729983]]
ENST00000570260 [[46723618, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46728850, 46728963]] None
ENST00000566860 [[46724697, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46732297]] [[46724984, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46731497]]
ENST00000575571 [[46728848, 46728996], [46729473, 46729586], [46729928, 46729997], [46731369, 46731810]] None
ENST00000567000 [[46729020, 46729586], [46729928, 46729997], [46731369, 46732294]] None
NM_014321 [[46723557, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46732306]] [[46723617, 46723682], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46731497]]
NR_037620 [[46723557, 46723741], [46724902, 46725032], [46726293, 46726457], [46727004, 46727094], [46729473, 46729586], [46729928, 46729997], [46731369, 46732306]] None
Promoter
Chrom Start End Description
chr16 46723526 46723534 CAGE_peak_2_at_ORC6_5end
chr16 46723552 46723612 CAGE_peak_1_at_ORC6_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr16 GH16I046746 46746478 46750226 1.76 [{'connected_gene': 'MYLK3', 'score': 566.38}, {'connected_gene': 'SHCBP1', 'score': 13.34}, {'connected_gene': 'ORC6', 'score': 11.25}, {'connected_gene': 'VPS35', 'score': 11.25}, {'connected_gene': 'GPT2', 'score': 3.82}, {'connected_gene': 'GC16M046768', 'score': 0.31}, {'connected_gene': 'GC16P046705', 'score': 0.26}]
chr16 GH16I046735 46735361 46738937 0.38 [{'connected_gene': 'MYLK3', 'score': 12.11}, {'connected_gene': 'ORC6', 'score': 11.52}, {'connected_gene': 'VPS35', 'score': 11.52}, {'connected_gene': 'SHCBP1', 'score': 11.3}, {'connected_gene': 'GPT2', 'score': 3.81}, {'connected_gene': 'GC16P046705', 'score': 0.29}, {'connected_gene': 'GC16M046768', 'score': 0.28}]
chr16 GH16I046711 46711201 46711800 0.92 [{'connected_gene': 'MYLK3', 'score': 11.96}, {'connected_gene': 'ORC6', 'score': 11.52}, {'connected_gene': 'VPS35', 'score': 11.52}, {'connected_gene': 'GC16P046705', 'score': 0.44}, {'connected_gene': 'GC16M046768', 'score': 0.21}]
chr16 GH16I046710 46710514 46711065 0.2 [{'connected_gene': 'MYLK3', 'score': 11.96}, {'connected_gene': 'ORC6', 'score': 11.52}, {'connected_gene': 'VPS35', 'score': 11.52}, {'connected_gene': 'GC16P046705', 'score': 0.44}, {'connected_gene': 'GC16M046768', 'score': 0.21}]
chr16 GH16I046836 46836801 46837400 0.46 [{'connected_gene': 'GPT2', 'score': 11.47}, {'connected_gene': 'ORC6', 'score': 11.11}, {'connected_gene': 'VPS35', 'score': 11.11}, {'connected_gene': 'MYLK3', 'score': 10.6}, {'connected_gene': 'C16orf87', 'score': 0.44}, {'connected_gene': 'CKBP1', 'score': 0.44}]
chr16 GH16I046727 46727729 46734556 0.38 [{'connected_gene': 'SHCBP1', 'score': 12.95}, {'connected_gene': 'MYLK3', 'score': 12.1}, {'connected_gene': 'ORC6', 'score': 11.54}, {'connected_gene': 'VPS35', 'score': 11.54}, {'connected_gene': 'ANKRD26P1', 'score': 5.55}, {'connected_gene': 'C16orf87', 'score': 4.23}, {'connected_gene': 'GC16P046705', 'score': 0.31}, {'connected_gene': 'GC16M046768', 'score': 0.26}]
chr16 GH16I046756 46756546 46758278 1.16 [{'connected_gene': 'SHCBP1', 'score': 14.0}, {'connected_gene': 'C16orf87', 'score': 6.53}, {'connected_gene': 'ORC6', 'score': 3.09}, {'connected_gene': 'GC16M046768', 'score': 0.37}, {'connected_gene': 'MYLK3', 'score': 0.29}, {'connected_gene': 'GC16P046705', 'score': 0.23}]
chr16 GH16I046832 46832869 46833018 0.71 [{'connected_gene': 'C16orf87', 'score': 550.77}, {'connected_gene': 'ORC6', 'score': 11.11}, {'connected_gene': 'VPS35', 'score': 11.11}, {'connected_gene': 'GPT2', 'score': 11.06}, {'connected_gene': 'CKBP1', 'score': 0.39}]
chr16 GH16I046686 46686163 46691941 2.06 [{'connected_gene': 'ORC6', 'score': 550.77}, {'connected_gene': 'VPS35', 'score': 550.77}, {'connected_gene': 'GPT2', 'score': 13.88}, {'connected_gene': 'SHCBP1', 'score': 12.64}, {'connected_gene': 'ENSG00000261131', 'score': 12.39}, {'connected_gene': 'MYLK3', 'score': 10.89}, {'connected_gene': 'ANKRD26P1', 'score': 5.78}, {'connected_gene': 'ENSG00000280376', 'score': 0.37}]
chr16 GH16I046809 46809601 46810200 0.38 [{'connected_gene': 'ORC6', 'score': 11.03}, {'connected_gene': 'VPS35', 'score': 11.03}, {'connected_gene': 'GPT2', 'score': 10.27}, {'connected_gene': 'GC16P046804', 'score': 0.44}, {'connected_gene': 'C16orf87', 'score': 0.34}]
chr16 GH16I046611 46611987 46612899 0.43 [{'connected_gene': 'ORC6', 'score': 11.27}, {'connected_gene': 'VPS35', 'score': 11.27}, {'connected_gene': 'SHCBP1', 'score': 0.39}, {'connected_gene': 'GC16P046596', 'score': 0.37}, {'connected_gene': 'GC16P046597', 'score': 0.37}]
chr16 GH16I046658 46658513 46660013 0.83 [{'connected_gene': 'ORC6', 'score': 11.87}, {'connected_gene': 'VPS35', 'score': 11.87}, {'connected_gene': 'ENSG00000261131', 'score': 0.77}, {'connected_gene': 'PIR53331', 'score': 0.44}]
chr16 GH16I046843 46843923 46845162 0.38 [{'connected_gene': 'CKBP1', 'score': 550.77}, {'connected_gene': 'GPT2', 'score': 12.1}, {'connected_gene': 'ORC6', 'score': 11.23}, {'connected_gene': 'VPS35', 'score': 11.23}, {'connected_gene': 'MYLK3', 'score': 10.91}, {'connected_gene': 'C16orf87', 'score': 0.39}]
chr16 GH16I046695 46695807 46698128 0.43 [{'connected_gene': 'PIR35721', 'score': 550.77}, {'connected_gene': 'GPT2', 'score': 13.29}, {'connected_gene': 'MYLK3', 'score': 10.81}, {'connected_gene': 'ORC6', 'score': 0.44}]