PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr2	214013461	214013517	CAGE_peak_6_at_IKZF2_5end
chr2	214014942	214014952	CAGE_peak_15_at_IKZF2_5end
chr2	214014959	214015006	CAGE_peak_4_at_IKZF2_5end
chr2	214015111	214015179	CAGE_peak_1_at_IKZF2_5end
chr2	214015343	214015366	CAGE_peak_3_at_IKZF2_5end
chr2	214015379	214015410	CAGE_peak_9_at_IKZF2_5end
chr2	214016254	214016282	CAGE_peak_7_at_IKZF2_5end
chr2	214016314	214016343	CAGE_peak_2_at_IKZF2_5end
chr2	214016443	214016461	CAGE_peak_17_at_IKZF2_5end
chr2	214016467	214016482	CAGE_peak_14_at_IKZF2_5end
chr2	214016496	214016544	CAGE_peak_5_at_IKZF2_5end
chr2	214016899	214016926	CAGE_peak_10_at_IKZF2_5end
chr2	214017053	214017065	CAGE_peak_16_at_IKZF2_5end
chr2	214017168	214017189	CAGE_peak_8_at_IKZF2_5end
chr2	214017199	214017208	CAGE_peak_26_at_IKZF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I213241	213241575	213245048	1.15	[{'connected_gene': 'IKZF2', 'score': 1.75}, {'connected_gene': 'ENSG00000272519', 'score': 0.29}, {'connected_gene': 'LOC105373864', 'score': 0.18}]
chr2	GH02I213155	213155598	213156218	0.2	[{'connected_gene': 'IKZF2', 'score': 550.77}, {'connected_gene': 'LINC01953', 'score': 0.39}]
chr2	GH02I213156	213156647	213158164	1.15	[{'connected_gene': 'IKZF2', 'score': 18.56}, {'connected_gene': 'LINC01953', 'score': 0.39}]
chr2	GH02I212977	212977339	212977352	0.47	[{'connected_gene': 'IKZF2', 'score': 3.9}, {'connected_gene': 'GC02P212981', 'score': 0.77}, {'connected_gene': 'LOC102725082', 'score': 0.37}, {'connected_gene': 'ENSG00000273118', 'score': 0.26}, {'connected_gene': 'MIR4776-2', 'score': 0.23}]
chr2	GH02I212954	212954749	212961958	1.23	[{'connected_gene': 'IKZF2', 'score': 2.48}, {'connected_gene': 'GC02P212981', 'score': 0.34}, {'connected_gene': 'MIR4776-2', 'score': 0.29}, {'connected_gene': 'LOC102725082', 'score': 0.28}, {'connected_gene': 'ENSG00000273118', 'score': 0.21}]
chr2	GH02I213100	213100037	213102896	0.4	[{'connected_gene': 'IKZF2', 'score': 9.13}, {'connected_gene': 'ENSG00000270659', 'score': 4.31}, {'connected_gene': 'GC02M213104', 'score': 0.77}, {'connected_gene': 'GC02M213019', 'score': 0.2}]
chr2	GH02I213065	213065640	213066797	0.83	[{'connected_gene': 'IKZF2', 'score': 8.31}, {'connected_gene': 'ENSG00000270659', 'score': 7.5}, {'connected_gene': 'GC02M213019', 'score': 0.29}, {'connected_gene': 'GC02M213104', 'score': 0.28}]
chr2	GH02I213128	213128821	213130691	0.2	[{'connected_gene': 'IKZF2', 'score': 5.48}, {'connected_gene': 'GC02P213140', 'score': 0.39}, {'connected_gene': 'GC02P213107', 'score': 0.34}]
chr2	GH02I213131	213131965	213133660	0.2	[{'connected_gene': 'IKZF2', 'score': 8.84}, {'connected_gene': 'GC02P213140', 'score': 0.44}, {'connected_gene': 'GC02P213107', 'score': 0.31}]
chr2	GH02I213115	213115185	213116105	0.2	[{'connected_gene': 'IKZF2', 'score': 8.51}, {'connected_gene': 'ENSG00000270659', 'score': 4.5}, {'connected_gene': 'GC02P213107', 'score': 0.44}, {'connected_gene': 'GC02P213140', 'score': 0.31}]
chr2	GH02I213133	213133876	213135106	0.2	[{'connected_gene': 'IKZF2', 'score': 8.72}, {'connected_gene': 'GC02P213140', 'score': 0.44}, {'connected_gene': 'GC02P213107', 'score': 0.31}]
chr2	GH02I213141	213141055	213154803	2.61	[{'connected_gene': 'IKZF2', 'score': 571.74}, {'connected_gene': 'ENSG00000270659', 'score': 10.12}, {'connected_gene': 'GC02P213151', 'score': 0.77}, {'connected_gene': 'GC02P213140', 'score': 0.44}]
chr2	GH02I213112	213112991	213114202	0.2	[{'connected_gene': 'IKZF2', 'score': 12.13}, {'connected_gene': 'ENSG00000270659', 'score': 4.75}, {'connected_gene': 'GC02P213107', 'score': 0.44}, {'connected_gene': 'GC02P213140', 'score': 0.31}]
chr2	GH02I213164	213164897	213167608	1.04	[{'connected_gene': 'LOC105373864', 'score': 550.77}, {'connected_gene': 'LINC01953', 'score': 550.77}, {'connected_gene': 'IKZF2', 'score': 15.21}]
chr2	GH02I212999	212999693	212999942	0.51	[{'connected_gene': 'LOC102725082', 'score': 0.77}, {'connected_gene': 'ENSG00000273118', 'score': 0.34}, {'connected_gene': 'IKZF2', 'score': 0.1}]
chr2	GH02I213230	213230544	213241292	1.62	[{'connected_gene': 'LOC100130451', 'score': 10.64}, {'connected_gene': 'SPAG16', 'score': 10.64}, {'connected_gene': 'IKZF2', 'score': 7.19}, {'connected_gene': 'ENSG00000272519', 'score': 0.26}, {'connected_gene': 'LOC105373864', 'score': 0.2}]
chr2	GH02I213103	213103492	213105588	0.94	[{'connected_gene': 'GC02M213104', 'score': 550.77}, {'connected_gene': 'IKZF2', 'score': 12.12}, {'connected_gene': 'ENSG00000270659', 'score': 4.2}, {'connected_gene': 'GC02M213019', 'score': 0.2}]
chr2	GH02I212681	212681382	212681701	0.22	[{'connected_gene': 'GC02M212658', 'score': 550.77}, {'connected_gene': 'IKZF2', 'score': 1.34}, {'connected_gene': 'PIR33846', 'score': 0.34}, {'connected_gene': 'ENSG00000273118', 'score': 0.05}]
chr2	GH02I213135	213135297	213136123	0.31	[{'connected_gene': 'GC02P213140', 'score': 0.44}, {'connected_gene': 'IKZF2', 'score': 0.37}, {'connected_gene': 'GC02P213107', 'score': 0.31}]
chr2	GH02I213021	213021457	213023405	1	[{'connected_gene': 'ENSG00000273118', 'score': 550.77}, {'connected_gene': 'ENSG00000270659', 'score': 4.93}, {'connected_gene': 'GC02M213019', 'score': 0.39}, {'connected_gene': 'IKZF2', 'score': 0.12}]
chr2	GH02I213088	213088719	213090477	0.38	[{'connected_gene': 'ENSG00000270659', 'score': 6.36}, {'connected_gene': 'GC02M213104', 'score': 0.37}, {'connected_gene': 'GC02M213019', 'score': 0.23}, {'connected_gene': 'IKZF2', 'score': 0.21}]
chr2	GH02I213123	213123766	213124777	0.2	[{'connected_gene': 'GC02P213107', 'score': 0.37}, {'connected_gene': 'GC02P213140', 'score': 0.37}, {'connected_gene': 'IKZF2', 'score': 0.31}]
chr2	GH02I213086	213086387	213087246	0.51	[{'connected_gene': 'GC02M213104', 'score': 0.37}, {'connected_gene': 'GC02M213019', 'score': 0.23}, {'connected_gene': 'IKZF2', 'score': 0.2}]
chr2	GH02I213069	213069001	213069200	0.4	[{'connected_gene': 'GC02M213019', 'score': 0.29}, {'connected_gene': 'GC02M213104', 'score': 0.28}, {'connected_gene': 'IKZF2', 'score': 0.17}]
chr2	GH02I213036	213036853	213039679	0.94	[{'connected_gene': 'GC02M213019', 'score': 0.77}, {'connected_gene': 'GC02M213104', 'score': 0.2}, {'connected_gene': 'IKZF2', 'score': 0.13}]
chr2	GH02I213125	213125406	213126642	0.51	[{'connected_gene': 'GC02P213140', 'score': 0.39}, {'connected_gene': 'GC02P213107', 'score': 0.37}, {'connected_gene': 'IKZF2', 'score': 0.31}]
chr2	GH02I213117	213117246	213123219	1.09	[{'connected_gene': 'GC02P213107', 'score': 0.39}, {'connected_gene': 'GC02P213140', 'score': 0.34}, {'connected_gene': 'IKZF2', 'score': 0.29}]
chr2	GH02I213106	213106900	213108223	0.2	[{'connected_gene': 'GC02P213107', 'score': 550.77}, {'connected_gene': 'IKZF2', 'score': 12.12}, {'connected_gene': 'GC02M213104', 'score': 0.77}]
chr2	GH02I213000	213000760	213002361	0.46	[{'connected_gene': 'ENSG00000270659', 'score': 4.61}, {'connected_gene': 'LOC102725082', 'score': 0.44}, {'connected_gene': 'ENSG00000273118', 'score': 0.37}, {'connected_gene': 'IKZF2', 'score': 0.1}]
chr2	GH02I213014	213014473	213017009	0.98	[{'connected_gene': 'ENSG00000270659', 'score': 5.27}, {'connected_gene': 'ENSG00000273118', 'score': 0.44}, {'connected_gene': 'LOC102725082', 'score': 0.37}, {'connected_gene': 'IKZF2', 'score': 0.12}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000457361	[[213864428, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214015058]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000342002	[[213870086, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214015058]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214014907]]
ENST00000434687	[[213870086, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013368], [214014867, 214014971], [214016136, 214016327]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000374319	[[213871895, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013368], [214014867, 214014971], [214016136, 214016327]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000453575	[[213872076, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [213962600, 213962684], [214012431, 214012536], [214013319, 214013353]]	[[213962664, 213962684], [214012431, 214012536], [214013319, 214013353]]
ENST00000439848	[[213872080, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921289, 213921468], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]	[[213921427, 213921468], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000374326	[[213872080, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213962600, 213962684], [214012431, 214012536], [214013319, 214013353]]	[[213962664, 213962684], [214012431, 214012536], [214013319, 214013353]]
ENST00000412444	[[213872080, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [213945893, 213945962], [213962600, 213962684], [214012431, 214012536], [214013319, 214013353]]	[[213962664, 213962684], [214012431, 214012536], [214013319, 214013353]]
ENST00000374327	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [214012431, 214012536], [214013319, 214013353]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [214012431, 214012536], [214013319, 214013353]]
ENST00000451136	[[213872083, 213872808], [213878514, 213878658], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]	[[213872083, 213872808], [213878514, 213878658], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000413091	[[213872083, 213872808], [213878514, 213878658], [213886367, 213886444], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]	[[213886436, 213886444], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000421754	[[213872083, 213872808], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]	[[213872083, 213872808], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000431520	[[213872083, 213872808], [213878514, 213878658], [213881646, 213881768], [213886367, 213886444], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]	[[213886436, 213886444], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000484040	[[213870762, 213872808], [213878514, 213880002]]	None
ENST00000433134	[[213914573, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214015132]]	[[213914573, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214014907]]
ENST00000452786	[[213921712, 213921823], [214012431, 214012536], [214013319, 214013368], [214016849, 214017151]]	[[213921712, 213921823], [214012431, 214012536], [214013319, 214013353]]
ENST00000442445	[[214012095, 214012536], [214013319, 214013368], [214014904, 214014965]]	[[214012309, 214012536], [214013319, 214013368], [214014904, 214014907]]
NM_016260	[[213864407, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013368], [214014904, 214015058]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921556, 213921823], [214012431, 214012536], [214013319, 214013353]]
NM_001079526	[[213864407, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013368], [214014867, 214014971], [214016136, 214016333]]	[[213872083, 213872808], [213878514, 213878658], [213886716, 213886854], [213914436, 213914604], [213921634, 213921823], [214012431, 214012536], [214013319, 214013353]]