PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000536402	[[108083522, 108083701], [108133824, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108281830, 108281923], [108290429, 108290568], [108294925, 108295018]]	[[108133883, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108281830, 108281888]]
ENST00000281092	[[108083522, 108083701], [108103793, 108103939], [108133824, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108532542]]	[[108133883, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523276]]
ENST00000509035	[[108083541, 108083701], [108133824, 108134090], [108168470, 108168625]]	None
ENST00000513676	[[108084099, 108084334], [108133824, 108134090], [108168470, 108168521]]	None
ENST00000504143	[[108084662, 108084694], [108103793, 108103939], [108133824, 108134090], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523976]]	[[108133883, 108134090], [108203467, 108203515]]
ENST00000502752	[[108084667, 108084694], [108103793, 108103939], [108118363, 108118456], [108133824, 108134090], [108168470, 108168644], [108171408, 108171508], [108177531, 108177569], [108177962, 108178702]]	None
ENST00000438717	[[108133814, 108134090], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523934]]	[[108203511, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523276]]
ENST00000505323	[[108260308, 108260490], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380527]]	None
ENST00000513777	[[108513217, 108513330], [108516447, 108516602], [108521900, 108522023], [108523133, 108523368]]	None
NM_005246	[[108083522, 108083701], [108103793, 108103939], [108133824, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108532542]]	[[108133883, 108134090], [108168470, 108168644], [108171408, 108171508], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523276]]
NM_001308038	[[108084627, 108084694], [108103793, 108103939], [108118363, 108118456], [108133824, 108134090], [108168470, 108168644], [108171408, 108171508], [108177531, 108177569], [108177962, 108178701]]	[[108133883, 108134090], [108168470, 108168644], [108171408, 108171508], [108177531, 108177542]]
NM_001308028	[[108084627, 108084694], [108103793, 108103939], [108133824, 108134090], [108203467, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108532542]]	[[108203511, 108203651], [108207065, 108207203], [108207793, 108207913], [108219096, 108219219], [108233359, 108233549], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523276]]
NM_001308031	[[108260306, 108260490], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108532542]]	[[108260361, 108260490], [108281830, 108281923], [108290429, 108290633], [108294925, 108295048], [108373122, 108373179], [108380380, 108380496], [108382804, 108382899], [108436096, 108436220], [108516447, 108516602], [108521900, 108522023], [108523133, 108523276]]

Promoter

Chrom	Start	End	Description
chr5	108083517	108083576	CAGE_peak_3_at_FER_5end
chr5	108083581	108083637	CAGE_peak_2_at_FER_5end
chr5	108083641	108083654	CAGE_peak_7_at_FER_5end
chr5	108084116	108084134	CAGE_peak_6_at_FER_5end
chr5	108084633	108084678	CAGE_peak_1_at_FER_5end
chr5	108084680	108084698	CAGE_peak_5_at_FER_5end
chr5	108260267	108260280	CAGE_peak_9_at_FER_5end
chr5	108260286	108260322	CAGE_peak_4_at_FER_5end
chr5	108260329	108260344	CAGE_peak_8_at_FER_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I108379	108379734	108384001	2.3	[{'connected_gene': 'FBXL17', 'score': 555.02}, {'connected_gene': 'FER', 'score': 9.82}, {'connected_gene': 'GC05P108054', 'score': 0.05}]
chr5	GH05I108530	108530588	108532229	0.99	[{'connected_gene': 'LOC285638', 'score': 12.61}, {'connected_gene': 'LINC01023', 'score': 11.54}, {'connected_gene': 'FER', 'score': 10.67}, {'connected_gene': 'GC05P108543', 'score': 0.39}, {'connected_gene': 'LOC105379114', 'score': 0.21}]
chr5	GH05I109063	109063360	109063509	0.2	[{'connected_gene': 'GJA1P1', 'score': 0.39}, {'connected_gene': 'GC05P109192', 'score': 0.13}, {'connected_gene': 'FER', 'score': 0.06}]
chr5	GH05I109054	109054140	109054189	0.62	[{'connected_gene': 'GJA1P1', 'score': 550.77}, {'connected_gene': 'GC05M109052', 'score': 550.77}, {'connected_gene': 'GC05P109192', 'score': 0.12}, {'connected_gene': 'FER', 'score': 0.06}]
chr5	GH05I109105	109105143	109106555	0.74	[{'connected_gene': 'GJA1P1', 'score': 0.23}, {'connected_gene': 'GC05P109192', 'score': 0.17}, {'connected_gene': 'FER', 'score': 0.05}]
chr5	GH05I109484	109484580	109485466	0.94	[{'connected_gene': 'FER', 'score': 25.16}, {'connected_gene': 'LOC285638', 'score': 11.77}, {'connected_gene': 'ENSG00000248876', 'score': 0.39}, {'connected_gene': 'ENSG00000248440', 'score': 0.39}, {'connected_gene': 'LOC105379117', 'score': 0.37}]
chr5	GH05I108746	108746902	108750561	2.3	[{'connected_gene': 'FER', 'score': 559.7}, {'connected_gene': 'LINC01023', 'score': 4.8}, {'connected_gene': 'LOC100422561', 'score': 0.28}]
chr5	GH05I108872	108872101	108873948	0.2	[{'connected_gene': 'FER', 'score': 16.88}, {'connected_gene': 'ENSG00000250383', 'score': 11.4}, {'connected_gene': 'LINC01023', 'score': 4.48}, {'connected_gene': 'GC05P108892', 'score': 0.37}]
chr5	GH05I108742	108742847	108744609	0.43	[{'connected_gene': 'FER', 'score': 8.28}, {'connected_gene': 'LINC01023', 'score': 4.82}, {'connected_gene': 'GC05P108729', 'score': 0.39}]
chr5	GH05I108752	108752121	108754615	1.11	[{'connected_gene': 'FER', 'score': 9.34}, {'connected_gene': 'LOC100422561', 'score': 0.29}]
chr5	GH05I108800	108800973	108802782	1.14	[{'connected_gene': 'FER', 'score': 16.73}, {'connected_gene': 'ENSG00000250383', 'score': 12.88}, {'connected_gene': 'LOC100422561', 'score': 0.37}]
chr5	GH05I108687	108687980	108688070	0.31	[{'connected_gene': 'FER', 'score': 11.51}, {'connected_gene': 'GC05M108715', 'score': 0.28}, {'connected_gene': 'PIR47866', 'score': 0.23}]
chr5	GH05I108685	108685601	108687673	1.19	[{'connected_gene': 'FER', 'score': 11.51}, {'connected_gene': 'GC05M108715', 'score': 0.28}, {'connected_gene': 'PIR47866', 'score': 0.23}]
chr5	GH05I108884	108884231	108885445	0.58	[{'connected_gene': 'FER', 'score': 9.03}, {'connected_gene': 'GC05P108892', 'score': 0.44}, {'connected_gene': 'ENSG00000250383', 'score': 0.23}]
chr5	GH05I108834	108834696	108834713	0.23	[{'connected_gene': 'FER', 'score': 1.91}, {'connected_gene': 'ENSG00000250383', 'score': 0.77}, {'connected_gene': 'GC05P108892', 'score': 0.22}]
chr5	GH05I108735	108735749	108736106	0.89	[{'connected_gene': 'FER', 'score': 19.22}, {'connected_gene': 'GC05P108729', 'score': 0.44}]
chr5	GH05I109468	109468601	109469029	1.21	[{'connected_gene': 'LOC105379117', 'score': 550.77}, {'connected_gene': 'ENSG00000251367', 'score': 550.77}, {'connected_gene': 'FER', 'score': 58.67}, {'connected_gene': 'LINC01023', 'score': 12.29}]
chr5	GH05I108924	108924060	108924816	0.79	[{'connected_gene': 'LOC100820733', 'score': 0.31}, {'connected_gene': 'GC05P108970', 'score': 0.25}, {'connected_gene': 'FER', 'score': 0.1}]
chr5	GH05I109190	109190616	109192297	1	[{'connected_gene': 'GC05P109192', 'score': 550.77}, {'connected_gene': 'GJA1P1', 'score': 0.12}, {'connected_gene': 'FER', 'score': 0.05}]
chr5	GH05I109161	109161732	109162655	0.71	[{'connected_gene': 'GC05P109192', 'score': 0.29}, {'connected_gene': 'GJA1P1', 'score': 0.14}, {'connected_gene': 'FER', 'score': 0.05}]
chr5	GH05I109125	109125105	109125207	0.22	[{'connected_gene': 'GC05P109192', 'score': 0.2}, {'connected_gene': 'GJA1P1', 'score': 0.19}, {'connected_gene': 'FER', 'score': 0.05}]
chr5	GH05I109176	109176900	109177890	0.2	[{'connected_gene': 'GC05P109192', 'score': 0.39}, {'connected_gene': 'GJA1P1', 'score': 0.13}, {'connected_gene': 'FER', 'score': 0.04}]
chr5	GH05I109192	109192699	109193569	0.2	[{'connected_gene': 'GC05P109192', 'score': 550.77}, {'connected_gene': 'GC05M109214', 'score': 0.18}, {'connected_gene': 'FER', 'score': 0.05}]
chr5	GH05I108858	108858801	108859401	0.93	[{'connected_gene': 'ENSG00000250383', 'score': 11.49}, {'connected_gene': 'GC05P108892', 'score': 0.29}, {'connected_gene': 'FER', 'score': 0.14}]
chr5	GH05I108993	108993333	108993684	0.25	[{'connected_gene': 'GC05M109016', 'score': 0.34}, {'connected_gene': 'RNU6-47P', 'score': 0.34}, {'connected_gene': 'GC05P108970', 'score': 0.34}, {'connected_gene': 'FER', 'score': 0.07}]
chr5	GH05I108935	108935720	108935869	0.2	[{'connected_gene': 'GC05P108970', 'score': 0.29}, {'connected_gene': 'LOC100820733', 'score': 0.26}, {'connected_gene': 'FER', 'score': 0.09}]
chr5	GH05I108726	108726471	108729337	1.59	[{'connected_gene': 'GC05M108725', 'score': 550.77}, {'connected_gene': 'LINC01023', 'score': 550.77}, {'connected_gene': 'LOC285638', 'score': 12.62}, {'connected_gene': 'FER', 'score': 8.22}, {'connected_gene': 'GC05M108715', 'score': 0.77}]
chr5	GH05I108729	108729400	108729549	0.54	[{'connected_gene': 'GC05M108725', 'score': 550.77}, {'connected_gene': 'GC05P108729', 'score': 550.77}, {'connected_gene': 'LINC01023', 'score': 550.77}, {'connected_gene': 'FER', 'score': 6.83}]
chr5	GH05I108818	108818601	108818801	0.57	[{'connected_gene': 'ENSG00000250383', 'score': 0.39}, {'connected_gene': 'LOC100422561', 'score': 0.29}, {'connected_gene': 'FER', 'score': 0.19}]