PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000339690	[[148402068, 148402528], [148406763, 148407253], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148406833, 148407253], [148453657, 148453723]]
ENST00000358556	[[148402068, 148402528], [148406763, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148406833, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
ENST00000511804	[[148402083, 148402528], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148464030]]	[[148453784, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
ENST00000324300	[[148402083, 148402528], [148406763, 148407253], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148406833, 148407253], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
ENST00000510697	[[148406833, 148407253], [148441002, 148441130], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463845]]	[[148406833, 148407253], [148441002, 148441130], [148457028, 148457044]]
ENST00000506066	[[148406833, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463845]]	[[148406833, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
ENST00000514245	[[148406985, 148407253], [148453657, 148453811]]	None
ENST00000503721	[[148452794, 148452882], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148465132]]	None
NM_001256283	[[148402068, 148402528], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148453784, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
NM_001166055	[[148402068, 148402528], [148406763, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148406833, 148407253], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]
NR_045958	[[148402068, 148402528], [148406763, 148407253], [148441002, 148441130], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	None
NM_001957	[[148402068, 148402528], [148406763, 148407253], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148466106]]	[[148406833, 148407253], [148441002, 148441130], [148453657, 148453856], [148457028, 148457181], [148460968, 148461102], [148461528, 148461637], [148463629, 148463770]]

Promoter

Chrom	Start	End	Description
chr4	148401920	148401930	CAGE_peak_7_at_EDNRA_5end
chr4	148402078	148402099	CAGE_peak_4_at_EDNRA_5end
chr4	148402109	148402132	CAGE_peak_2_at_EDNRA_5end
chr4	148402212	148402230	CAGE_peak_3_at_EDNRA_5end
chr4	148402237	148402276	CAGE_peak_1_at_EDNRA_5end
chr4	148402291	148402302	CAGE_peak_5_at_EDNRA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I147453	147453573	147453847	0.63	[{'connected_gene': 'EDNRA', 'score': 6.45}, {'connected_gene': 'TMEM184C', 'score': 1.37}, {'connected_gene': 'PRMT5P1', 'score': 0.44}, {'connected_gene': 'RPL31P26', 'score': 0.31}]
chr4	GH04I147479	147479899	147479998	0.31	[{'connected_gene': 'EDNRA', 'score': 550.77}, {'connected_gene': 'PRMT5P1', 'score': 0.34}]
chr4	GH04I147353	147353676	147356878	0.43	[{'connected_gene': 'EDNRA', 'score': 4.78}, {'connected_gene': 'GC04P147361', 'score': 0.44}, {'connected_gene': 'MIR548G', 'score': 0.39}, {'connected_gene': 'GC04P147327', 'score': 0.31}]
chr4	GH04I147480	147480036	147482975	1.7	[{'connected_gene': 'EDNRA', 'score': 558.73}, {'connected_gene': 'GC04P147486', 'score': 0.44}]
chr4	GH04I147460	147460582	147461898	0.2	[{'connected_gene': 'PRMT5P1', 'score': 550.77}, {'connected_gene': 'EDNRA', 'score': 0.37}]
chr4	GH04I147497	147497669	147499368	0.51	[{'connected_gene': 'GC04P147493', 'score': 0.44}, {'connected_gene': 'GTF2F2P1', 'score': 0.44}, {'connected_gene': 'EDNRA', 'score': 0.37}]
chr4	GH04I147324	147324617	147327462	0.43	[{'connected_gene': 'GC04P147327', 'score': 550.77}, {'connected_gene': 'EDNRA', 'score': 13.72}, {'connected_gene': 'LOC105377476', 'score': 0.07}]
chr4	GH04I147359	147359345	147363870	0.82	[{'connected_gene': 'GC04P147361', 'score': 550.77}, {'connected_gene': 'EDNRA', 'score': 4.72}, {'connected_gene': 'GC04P147327', 'score': 0.29}, {'connected_gene': 'RPL31P26', 'score': 0.21}]
chr4	GH04I147491	147491844	147493537	0.63	[{'connected_gene': 'GC04P147493', 'score': 550.77}, {'connected_gene': 'EDNRA', 'score': 5.76}, {'connected_gene': 'ENSG00000280219', 'score': 0.77}, {'connected_gene': 'GC04P147486', 'score': 0.44}]