PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360534	[[162848750, 162849894], [162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162931052]]	[[162849792, 162849894], [162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162930491]]
ENST00000434918	[[162849792, 162849894], [162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162888544, 162888775], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895454, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904008], [162929908, 162929996], [162930485, 162930632]]	[[162894912, 162894932], [162895454, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904008], [162929908, 162929996], [162930485, 162930491]]
ENST00000490286	[[162851687, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996]]	None
ENST00000497461	[[162894851, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903211, 162903315], [162903424, 162903516], [162903912, 162904011], [162929908, 162930106]]	None
ENST00000461836	[[162894883, 162894932], [162895458, 162895531], [162902041, 162902122], [162903211, 162903516], [162903912, 162904011], [162929908, 162929973]]	None
ENST00000413651	[[162895497, 162895531], [162895641, 162895694], [162902041, 162902122], [162903211, 162903315], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162930512]]	[[162903243, 162903315], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162930491]]
ENST00000491591	[[162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162873871, 162874061]]	None
ENST00000494507	[[162862154, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870972]]	None
ENST00000468903	[[162873329, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162877968, 162878103]]	None
ENST00000416189	[[162894851, 162894932], [162895458, 162895531], [162902041, 162902122], [162903211, 162903315], [162903424, 162903516], [162903912, 162904008]]	[[162903243, 162903315], [162903424, 162903516], [162903912, 162904008]]
NM_001935	[[162848754, 162849894], [162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162931052]]	[[162849792, 162849894], [162851470, 162851544], [162851809, 162851882], [162862254, 162862319], [162865071, 162865171], [162865750, 162865805], [162868302, 162868497], [162870905, 162870975], [162873277, 162873376], [162873617, 162873665], [162875238, 162875360], [162875732, 162875786], [162876738, 162876806], [162877090, 162877198], [162879264, 162879309], [162881313, 162881449], [162890050, 162890163], [162891673, 162891834], [162894811, 162894932], [162895458, 162895531], [162895641, 162895694], [162902041, 162902122], [162903424, 162903516], [162903912, 162904011], [162929908, 162929996], [162930485, 162930491]]

Promoter

Chrom	Start	End	Description
chr2	162929965	162930004	CAGE_peak_11_at_DPP4_5end
chr2	162930006	162930030	CAGE_peak_13_at_DPP4_5end
chr2	162930070	162930118	CAGE_peak_8_at_DPP4_5end
chr2	162930189	162930196	CAGE_peak_19_at_DPP4_5end
chr2	162930503	162930521	CAGE_peak_3_at_DPP4_5end
chr2	162930536	162930551	CAGE_peak_5_at_DPP4_5end
chr2	162930560	162930613	CAGE_peak_1_at_DPP4_5end
chr2	162930622	162930641	CAGE_peak_4_at_DPP4_5end
chr2	162930654	162930665	CAGE_peak_7_at_DPP4_5end
chr2	162930688	162930752	CAGE_peak_2_at_DPP4_5end
chr2	162930797	162930810	CAGE_peak_6_at_DPP4_5end
chr2	162930861	162930874	CAGE_peak_10_at_DPP4_5end
chr2	162930904	162930915	CAGE_peak_12_at_DPP4_5end
chr2	162931058	162931063	CAGE_peak_16_at_DPP4_5end
chr2	162931082	162931100	CAGE_peak_9_at_DPP4_5end
chr2	162931120	162931131	CAGE_peak_15_at_DPP4_5end
chr2	162931138	162931149	CAGE_peak_14_at_DPP4_5end
chr2	162931221	162931224	CAGE_peak_18_at_DPP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I162117	162117389	162119718	0.74	[{'connected_gene': 'DPP4', 'score': 11.44}, {'connected_gene': 'ENSG00000224076', 'score': 10.71}, {'connected_gene': 'SLC4A10', 'score': 10.71}, {'connected_gene': 'ENSG00000251621', 'score': 10.71}, {'connected_gene': 'TIMM8AP1', 'score': 10.67}, {'connected_gene': 'ENSG00000230918', 'score': 4.79}, {'connected_gene': 'LOC101929532', 'score': 0.77}, {'connected_gene': 'GC02M162150', 'score': 0.29}, {'connected_gene': 'GC02M162149', 'score': 0.29}]
chr2	GH02I162063	162063801	162076221	2.54	[{'connected_gene': 'DPP4', 'score': 556.25}, {'connected_gene': 'AHCTF1P1', 'score': 11.45}, {'connected_gene': 'TANK', 'score': 4.72}, {'connected_gene': 'ENSG00000230918', 'score': 0.77}, {'connected_gene': 'RPEP5', 'score': 0.12}]
chr2	GH02I162084	162084672	162087293	1.25	[{'connected_gene': 'DPP4', 'score': 4.68}, {'connected_gene': 'FAP', 'score': 2.45}, {'connected_gene': 'EIF3EP2', 'score': 0.77}, {'connected_gene': 'TIMM8AP1', 'score': 0.44}]
chr2	GH02I162057	162057179	162060074	1.12	[{'connected_gene': 'DPP4', 'score': 4.66}, {'connected_gene': 'ENSG00000230918', 'score': 0.39}, {'connected_gene': 'RPEP5', 'score': 0.13}]
chr2	GH02I162062	162062361	162063320	0.66	[{'connected_gene': 'DPP4', 'score': 4.33}, {'connected_gene': 'ENSG00000230918', 'score': 0.39}, {'connected_gene': 'RPEP5', 'score': 0.12}]
chr2	GH02I162000	162000433	162000657	0.71	[{'connected_gene': 'RPEP5', 'score': 0.2}, {'connected_gene': 'ENSG00000230918', 'score': 0.19}, {'connected_gene': 'DPP4', 'score': 0.19}]
chr2	GH02I162002	162002411	162003255	0.6	[{'connected_gene': 'RPEP5', 'score': 0.19}, {'connected_gene': 'ENSG00000230918', 'score': 0.19}, {'connected_gene': 'DPP4', 'score': 0.19}]
chr2	GH02I161991	161991754	161993843	0.6	[{'connected_gene': 'RPEP5', 'score': 0.21}, {'connected_gene': 'ENSG00000230918', 'score': 0.18}, {'connected_gene': 'DPP4', 'score': 0.18}]
chr2	GH02I162112	162112551	162115060	1.12	[{'connected_gene': 'LOC101929532', 'score': 550.77}, {'connected_gene': 'TIMM8AP1', 'score': 11.29}, {'connected_gene': 'DPP4', 'score': 11.15}, {'connected_gene': 'ENSG00000233397', 'score': 0.34}]
chr2	GH02I162011	162011048	162014600	0.83	[{'connected_gene': 'LINC01806', 'score': 8.2}, {'connected_gene': 'ENSG00000230918', 'score': 0.21}, {'connected_gene': 'DPP4', 'score': 0.21}, {'connected_gene': 'RPEP5', 'score': 0.18}]
chr2	GH02I162021	162021413	162022623	0.54	[{'connected_gene': 'ENSG00000230918', 'score': 0.23}, {'connected_gene': 'DPP4', 'score': 0.23}, {'connected_gene': 'RPEP5', 'score': 0.16}]
chr2	GH02I162029	162029260	162030510	0.72	[{'connected_gene': 'ENSG00000230918', 'score': 12.22}, {'connected_gene': 'DPP4', 'score': 12.22}, {'connected_gene': 'RPEP5', 'score': 0.15}]
chr2	GH02I162060	162060411	162060646	0.22	[{'connected_gene': 'ENSG00000230918', 'score': 0.39}, {'connected_gene': 'DPP4', 'score': 0.39}, {'connected_gene': 'RPEP5', 'score': 0.13}]
chr2	GH02I161994	161994601	161995000	0.4	[{'connected_gene': 'ENSG00000230918', 'score': 11.47}, {'connected_gene': 'DPP4', 'score': 11.47}, {'connected_gene': 'RPEP5', 'score': 0.21}]
chr2	GH02I161995	161995261	161996381	0.98	[{'connected_gene': 'ENSG00000230918', 'score': 11.47}, {'connected_gene': 'DPP4', 'score': 11.47}, {'connected_gene': 'RPEP5', 'score': 0.21}]
chr2	GH02I162037	162037131	162037280	0.2	[{'connected_gene': 'ENSG00000230918', 'score': 0.28}, {'connected_gene': 'DPP4', 'score': 0.28}, {'connected_gene': 'RPEP5', 'score': 0.14}]
chr2	GH02I162007	162007693	162009665	0.52	[{'connected_gene': 'ENSG00000230918', 'score': 0.21}, {'connected_gene': 'DPP4', 'score': 0.2}, {'connected_gene': 'RPEP5', 'score': 0.18}]
chr2	GH02I162016	162016211	162016360	0.88	[{'connected_gene': 'ENSG00000230918', 'score': 0.22}, {'connected_gene': 'DPP4', 'score': 0.22}, {'connected_gene': 'RPEP5', 'score': 0.18}]
chr2	GH02I162025	162025651	162025900	0.43	[{'connected_gene': 'ENSG00000230918', 'score': 11.21}, {'connected_gene': 'DPP4', 'score': 11.21}, {'connected_gene': 'RPEP5', 'score': 0.16}]
chr2	GH02I162024	162024136	162025151	0.2	[{'connected_gene': 'ENSG00000230918', 'score': 11.21}, {'connected_gene': 'DPP4', 'score': 11.21}, {'connected_gene': 'RPEP5', 'score': 0.16}]
chr2	GH02I162027	162027329	162028378	1.12	[{'connected_gene': 'ENSG00000230918', 'score': 12.2}, {'connected_gene': 'DPP4', 'score': 12.2}, {'connected_gene': 'RPEP5', 'score': 0.15}]
chr2	GH02I162105	162105813	162106953	0.31	[{'connected_gene': 'ENSG00000230918', 'score': 12.1}, {'connected_gene': 'DPP4', 'score': 12.1}, {'connected_gene': 'LOC101929532', 'score': 0.44}, {'connected_gene': 'ENSG00000233397', 'score': 0.39}]