PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306960	[[62676150, 62678650], [62688689, 62689153]]	[[62677189, 62678572]]
ENST00000543973	[[62677209, 62678650], [62688144, 62688236], [62688689, 62689279]]	[[62677209, 62678572]]
ENST00000536524	[[62678169, 62678650], [62684345, 62684413]]	[[62678169, 62678572]]
NM_000738	[[62676150, 62678650], [62688689, 62689012]]	[[62677189, 62678572]]

Promoter

Chrom	Start	End	Description
chr11	62688753	62688760	CAGE_peak_4_at_CHRM1_5end
chr11	62688765	62688781	CAGE_peak_3_at_CHRM1_5end
chr11	62688789	62688840	CAGE_peak_1_at_CHRM1_5end
chr11	62689046	62689100	CAGE_peak_2_at_CHRM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I062925	62925749	62925858	0.43	[{'connected_gene': 'SLC22A6', 'score': 10.89}, {'connected_gene': 'CHRM1', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.44}, {'connected_gene': 'LOC105369333', 'score': 0.44}]
chr11	GH11I062923	62923835	62923938	0.49	[{'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'CHRM1', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.44}]
chr11	GH11I062922	62922046	62922535	0.89	[{'connected_gene': 'CHRM1', 'score': 550.77}, {'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.39}]
chr11	GH11I062927	62922779	62922917	0.48	[{'connected_gene': 'CHRM1', 'score': 550.77}, {'connected_gene': 'SLC22A6', 'score': 10.88}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.39}]
chr11	GH11I062926	62921849	62921998	0.91	[{'connected_gene': 'CHRM1', 'score': 550.77}, {'connected_gene': 'LOC105369333', 'score': 0.77}, {'connected_gene': 'GC11P062933', 'score': 0.39}]
chr11	GH11I062921	62921549	62921698	1.29	[{'connected_gene': 'LOC105369333', 'score': 550.77}, {'connected_gene': 'CHRM1', 'score': 550.77}]
chr11	GH11I062924	62921326	62921546	1.26	[{'connected_gene': 'LOC105369333', 'score': 550.77}, {'connected_gene': 'CHRM1', 'score': 550.77}]
chr11	GH11I062908	62908754	62910094	1.17	[{'connected_gene': 'ENSG00000257002', 'score': 550.77}, {'connected_gene': 'BSCL2', 'score': 11.1}, {'connected_gene': 'CHRM1', 'score': 0.39}, {'connected_gene': 'GC11P062886', 'score': 0.34}]