Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000381020 [[28536273, 28537506], [28539006, 28539152], [28542602, 28545276]] [[28537251, 28537506], [28539006, 28539152], [28542602, 28543143]]
ENST00000548877 [[28537140, 28537506], [28539006, 28539152], [28541393, 28541462]] None
NM_001265 [[28536204, 28537506], [28539006, 28539152], [28542602, 28543505]] [[28537251, 28537506], [28539006, 28539152], [28542602, 28543143]]
Promoter
Chrom Start End Description
chr13 28541455 28541475 CAGE_peak_7_at_CDX2_5end
chr13 28541477 28541493 CAGE_peak_6_at_CDX2_5end
chr13 28543253 28543276 CAGE_peak_5_at_CDX2_5end
chr13 28543285 28543314 CAGE_peak_2_at_CDX2_5end
chr13 28543316 28543329 CAGE_peak_4_at_CDX2_5end
chr13 28543388 28543406 CAGE_peak_3_at_CDX2_5end
chr13 28543409 28543420 CAGE_peak_8_at_CDX2_5end
chr13 28543431 28543487 CAGE_peak_1_at_CDX2_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr13 GH13I027821 27821243 27823399 1.29 [{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.34}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13 GH13I027820 27820708 27820733 0.31 [{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.33}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13 GH13I027822 27821024 27821173 0.38 [{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.33}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13 GH13I027853 27853424 27853593 0.2 [{'connected_gene': 'GSX1', 'score': 11.48}, {'connected_gene': 'CDX2', 'score': 11.16}, {'connected_gene': 'PLUT', 'score': 11.04}, {'connected_gene': 'PDX1', 'score': 11.04}, {'connected_gene': 'RNU6-73P', 'score': 0.34}, {'connected_gene': 'LOC105370130', 'score': 0.25}]
chr13 GH13I027850 27850665 27853156 0.56 [{'connected_gene': 'GSX1', 'score': 11.5}, {'connected_gene': 'CDX2', 'score': 11.16}, {'connected_gene': 'PLUT', 'score': 11.04}, {'connected_gene': 'PDX1', 'score': 11.04}, {'connected_gene': 'USP12-AS2', 'score': 4.32}, {'connected_gene': 'RNU6-73P', 'score': 0.34}, {'connected_gene': 'LOC105370130', 'score': 0.25}]
chr13 GH13I027958 27958858 27982215 2 [{'connected_gene': 'CDX2', 'score': 557.17}, {'connected_gene': 'URAD', 'score': 22.79}, {'connected_gene': 'RPL21', 'score': 12.76}, {'connected_gene': 'PLUT', 'score': 12.55}, {'connected_gene': 'PDX1', 'score': 12.54}, {'connected_gene': 'GSX1', 'score': 10.83}, {'connected_gene': 'RN7SL272P', 'score': 10.79}, {'connected_gene': 'LNX2', 'score': 1.62}, {'connected_gene': 'FLT3', 'score': 1.36}, {'connected_gene': 'GC13M027960', 'score': 0.44}, {'connected_gene': 'LOC105370132', 'score': 0.44}]
chr13 GH13I027933 27933204 27933353 0.2 [{'connected_gene': 'CDX2', 'score': 12.68}, {'connected_gene': 'ATP5F1EP2', 'score': 0.39}, {'connected_gene': 'PLUT', 'score': 0.39}]
chr13 GH13I027934 27933396 27934108 0.2 [{'connected_gene': 'CDX2', 'score': 12.68}, {'connected_gene': 'ATP5F1EP2', 'score': 0.39}, {'connected_gene': 'PLUT', 'score': 0.39}]
chr13 GH13I027924 27924224 27924373 0.58 [{'connected_gene': 'CDX2', 'score': 12.47}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.77}, {'connected_gene': 'PDX1', 'score': 0.77}, {'connected_gene': 'ATP5F1EP2', 'score': 0.34}]
chr13 GH13I027929 27928976 27929393 0.38 [{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13 GH13I027927 27927145 27927443 0.43 [{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13 GH13I027926 27926618 27927136 0.43 [{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13 GH13I027928 27928204 27928233 0.58 [{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13 GH13I027952 27952463 27958474 1.78 [{'connected_gene': 'LINC00543', 'score': 550.77}, {'connected_gene': 'CDX2', 'score': 38.07}, {'connected_gene': 'PLUT', 'score': 12.6}, {'connected_gene': 'PDX1', 'score': 12.58}, {'connected_gene': 'GSX1', 'score': 10.74}, {'connected_gene': 'URAD', 'score': 8.01}, {'connected_gene': 'GC13M027960', 'score': 0.44}]