PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr2	68961905	68961932	CAGE_peak_4_at_ARHGAP25_5end
chr2	68961934	68961975	CAGE_peak_1_at_ARHGAP25_5end
chr2	68962023	68962095	CAGE_peak_5_at_ARHGAP25_5end
chr2	68962171	68962221	CAGE_peak_7_at_ARHGAP25_5end
chr2	68962229	68962279	CAGE_peak_6_at_ARHGAP25_5end
chr2	68962505	68962521	CAGE_peak_13_at_ARHGAP25_5end
chr2	69001913	69001926	CAGE_peak_9_at_ARHGAP25_5end
chr2	69001969	69001981	CAGE_peak_8_at_ARHGAP25_5end
chr2	69002030	69002049	CAGE_peak_3_at_ARHGAP25_5end
chr2	69002052	69002083	CAGE_peak_2_at_ARHGAP25_5end
chr2	69002133	69002144	CAGE_peak_10_at_ARHGAP25_5end
chr2	69002322	69002352	CAGE_peak_11_at_ARHGAP25_5end
chr2	69002354	69002366	CAGE_peak_16_at_ARHGAP25_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I068761	68761046	68777713	2.47	[{'connected_gene': 'ARHGAP25', 'score': 576.31}, {'connected_gene': 'FBXO48', 'score': 16.58}, {'connected_gene': 'APLF', 'score': 15.73}, {'connected_gene': 'LINC01888', 'score': 12.22}, {'connected_gene': 'PLEK', 'score': 6.0}, {'connected_gene': 'LOC105374790', 'score': 0.44}]
chr2	GH02I068732	68732175	68744213	2.26	[{'connected_gene': 'ARHGAP25', 'score': 559.83}, {'connected_gene': 'PLEK', 'score': 14.91}, {'connected_gene': 'LINC01888', 'score': 11.81}, {'connected_gene': 'FBXO48', 'score': 7.07}, {'connected_gene': 'APLF', 'score': 3.52}, {'connected_gene': 'LOC105374790', 'score': 0.34}]
chr2	GH02I068679	68679293	68679834	1.08	[{'connected_gene': 'ARHGAP25', 'score': 556.84}, {'connected_gene': 'PROKR1', 'score': 0.28}]
chr2	GH02I068810	68810997	68812581	0.86	[{'connected_gene': 'ARHGAP25', 'score': 5.31}, {'connected_gene': 'LINC01888', 'score': 0.34}, {'connected_gene': 'LOC105374790', 'score': 0.25}]
chr2	GH02I068710	68710425	68711169	0.49	[{'connected_gene': 'ARHGAP25', 'score': 0.29}, {'connected_gene': 'LOC105374790', 'score': 0.23}]
chr2	GH02I068709	68709549	68709698	0.88	[{'connected_gene': 'ARHGAP25', 'score': 0.29}, {'connected_gene': 'LOC105374790', 'score': 0.23}]
chr2	GH02I069161	69160884	69165799	1.48	[{'connected_gene': 'ANTXR1', 'score': 10.47}, {'connected_gene': 'ARHGAP25', 'score': 4.62}, {'connected_gene': 'ENSG00000231024', 'score': 4.53}, {'connected_gene': 'GC02M069149', 'score': 0.39}, {'connected_gene': 'RNA5SP96', 'score': 0.37}]
chr2	GH02I068833	68833801	68836599	1.36	[{'connected_gene': 'FBXO48', 'score': 22.96}, {'connected_gene': 'PLEK', 'score': 17.06}, {'connected_gene': 'LINC01890', 'score': 13.91}, {'connected_gene': 'APLF', 'score': 13.43}, {'connected_gene': 'ARHGAP25', 'score': 1.25}, {'connected_gene': 'LINC01888', 'score': 0.77}]
chr2	GH02I068717	68717302	68718146	0.38	[{'connected_gene': 'FBXO48', 'score': 11.48}, {'connected_gene': 'APLF', 'score': 11.48}, {'connected_gene': 'LINC01888', 'score': 11.34}, {'connected_gene': 'ARHGAP25', 'score': 0.28}, {'connected_gene': 'LOC105374790', 'score': 0.25}]
chr2	GH02I068714	68714560	68716912	1.18	[{'connected_gene': 'FBXO48', 'score': 11.48}, {'connected_gene': 'APLF', 'score': 11.48}, {'connected_gene': 'LINC01888', 'score': 11.33}, {'connected_gene': 'ARHGAP25', 'score': 0.28}, {'connected_gene': 'LOC105374790', 'score': 0.25}]
chr2	GH02I068722	68722967	68724779	0.52	[{'connected_gene': 'FBXO48', 'score': 11.62}, {'connected_gene': 'APLF', 'score': 11.62}, {'connected_gene': 'LOC105374790', 'score': 0.28}, {'connected_gene': 'ARHGAP25', 'score': 0.26}]
chr2	GH02I068720	68720059	68722373	1.09	[{'connected_gene': 'FBXO48', 'score': 10.37}, {'connected_gene': 'APLF', 'score': 10.37}, {'connected_gene': 'LOC105374790', 'score': 0.26}, {'connected_gene': 'ARHGAP25', 'score': 0.26}]
chr2	GH02I068375	68375036	68391543	1.59	[{'connected_gene': 'PLEK', 'score': 25.65}, {'connected_gene': 'FBXO48', 'score': 7.16}, {'connected_gene': 'APLF', 'score': 3.54}, {'connected_gene': 'ARHGAP25', 'score': 2.93}, {'connected_gene': 'PPP3R1', 'score': 2.46}, {'connected_gene': 'C1D', 'score': 2.29}, {'connected_gene': 'LOC101927723', 'score': 0.39}, {'connected_gene': 'LOC391383', 'score': 0.2}, {'connected_gene': 'GC02P067636', 'score': 0.03}]
chr2	GH02I068361	68361954	68370458	2.51	[{'connected_gene': 'PLEK', 'score': 569.63}, {'connected_gene': 'FBXO48', 'score': 5.11}, {'connected_gene': 'APLF', 'score': 4.9}, {'connected_gene': 'ARHGAP25', 'score': 3.56}, {'connected_gene': 'C1D', 'score': 2.81}, {'connected_gene': 'PPP3R1', 'score': 2.61}, {'connected_gene': 'LOC101927723', 'score': 0.77}, {'connected_gene': 'GC02P067636', 'score': 0.03}]
chr2	GH02I068805	68805642	68810625	1.51	[{'connected_gene': 'PLEK', 'score': 15.67}, {'connected_gene': 'LINC01888', 'score': 13.25}, {'connected_gene': 'BMP10', 'score': 10.69}, {'connected_gene': 'WDR92', 'score': 9.82}, {'connected_gene': 'ARHGAP25', 'score': 8.53}, {'connected_gene': 'FBXO48', 'score': 6.48}, {'connected_gene': 'LINC01890', 'score': 5.09}, {'connected_gene': 'APLF', 'score': 2.72}, {'connected_gene': 'LOC105374790', 'score': 0.25}]
chr2	GH02I068798	68798514	68800702	1.13	[{'connected_gene': 'PLEK', 'score': 12.97}, {'connected_gene': 'LINC01888', 'score': 12.33}, {'connected_gene': 'BMP10', 'score': 10.67}, {'connected_gene': 'LINC01890', 'score': 5.19}, {'connected_gene': 'FBXO48', 'score': 4.19}, {'connected_gene': 'ARHGAP25', 'score': 2.7}, {'connected_gene': 'APLF', 'score': 1.14}, {'connected_gene': 'LOC105374790', 'score': 0.28}]
chr2	GH02I068657	68657740	68659484	0.2	[{'connected_gene': 'GFPT1', 'score': 5.39}, {'connected_gene': 'PROKR1', 'score': 0.37}, {'connected_gene': 'ARHGAP25', 'score': 0.34}]
chr2	GH02I068653	68653401	68654200	0.98	[{'connected_gene': 'PROKR1', 'score': 0.39}, {'connected_gene': 'ARHGAP25', 'score': 0.31}, {'connected_gene': 'APLF', 'score': 0.09}]
chr2	GH02I068688	68688915	68691419	1.22	[{'connected_gene': 'LINC01888', 'score': 9.86}, {'connected_gene': 'ARHGAP25', 'score': 2.83}, {'connected_gene': 'PPP3R1', 'score': 2.22}, {'connected_gene': 'PROKR1', 'score': 1.7}, {'connected_gene': 'APLF', 'score': 1.16}, {'connected_gene': 'LOC105374790', 'score': 0.19}]
chr2	GH02I068861	68861469	68861643	0.36	[{'connected_gene': 'LINC01888', 'score': 11.76}, {'connected_gene': 'ARHGAP25', 'score': 4.73}, {'connected_gene': 'PLEK', 'score': 4.64}, {'connected_gene': 'APLF', 'score': 2.77}, {'connected_gene': 'FBXO48', 'score': 1.51}, {'connected_gene': 'BMP10', 'score': 0.44}, {'connected_gene': 'LINC01890', 'score': 0.34}]
chr2	GH02I068786	68786530	68793815	0.95	[{'connected_gene': 'LINC01888', 'score': 12.23}, {'connected_gene': 'ARHGAP25', 'score': 6.04}, {'connected_gene': 'LOC105374790', 'score': 0.31}]
chr2	GH02I068778	68778283	68783341	0.31	[{'connected_gene': 'LINC01888', 'score': 12.15}, {'connected_gene': 'ARHGAP25', 'score': 6.12}, {'connected_gene': 'LOC105374790', 'score': 0.37}]
chr2	GH02I068750	68750694	68755351	1.24	[{'connected_gene': 'LINC01888', 'score': 11.27}, {'connected_gene': 'FBXO48', 'score': 10.61}, {'connected_gene': 'APLF', 'score': 10.61}, {'connected_gene': 'ARHGAP25', 'score': 7.39}, {'connected_gene': 'LOC105374790', 'score': 0.44}]
chr2	GH02I068827	68827742	68833233	1.71	[{'connected_gene': 'LINC01888', 'score': 550.77}, {'connected_gene': 'PLEK', 'score': 25.99}, {'connected_gene': 'LINC01890', 'score': 14.85}, {'connected_gene': 'FBXO48', 'score': 7.95}, {'connected_gene': 'ARHGAP25', 'score': 5.4}, {'connected_gene': 'APLF', 'score': 4.17}, {'connected_gene': 'LOC105374790', 'score': 0.2}]
chr2	GH02I068794	68794072	68798000	0.92	[{'connected_gene': 'LINC01888', 'score': 12.25}, {'connected_gene': 'BMP10', 'score': 10.66}, {'connected_gene': 'ANXA4', 'score': 4.86}, {'connected_gene': 'LOC105374790', 'score': 0.29}, {'connected_gene': 'ARHGAP25', 'score': 0.13}]
chr2	GH02I068802	68802686	68805601	0.38	[{'connected_gene': 'LINC01888', 'score': 12.69}, {'connected_gene': 'BMP10', 'score': 9.92}, {'connected_gene': 'C1D', 'score': 5.41}, {'connected_gene': 'LOC105374790', 'score': 0.26}, {'connected_gene': 'ARHGAP25', 'score': 0.13}]
chr2	GH02I068695	68695858	68696941	0.31	[{'connected_gene': 'LINC01888', 'score': 9.85}, {'connected_gene': 'GKN2', 'score': 9.3}, {'connected_gene': 'ARHGAP25', 'score': 0.37}, {'connected_gene': 'LOC105374790', 'score': 0.2}]
chr2	GH02I068800	68800866	68802160	0.2	[{'connected_gene': 'LINC01888', 'score': 12.33}, {'connected_gene': 'LINC01890', 'score': 6.08}, {'connected_gene': 'LOC105374790', 'score': 0.28}, {'connected_gene': 'ARHGAP25', 'score': 0.13}]
chr2	GH02I068748	68748601	68749000	0.4	[{'connected_gene': 'LINC01888', 'score': 10.61}, {'connected_gene': 'LOC105374790', 'score': 0.39}, {'connected_gene': 'ARHGAP25', 'score': 0.2}]
chr2	GH02I068784	68784163	68785396	0.71	[{'connected_gene': 'LINC01888', 'score': 12.16}, {'connected_gene': 'LOC105374790', 'score': 0.34}, {'connected_gene': 'ARHGAP25', 'score': 0.14}]
chr2	GH02I068744	68744353	68745415	0.57	[{'connected_gene': 'LINC01888', 'score': 11.78}, {'connected_gene': 'LOC105374790', 'score': 0.37}, {'connected_gene': 'ARHGAP25', 'score': 0.2}]
chr2	GH02I068746	68746001	68746200	0.4	[{'connected_gene': 'LINC01888', 'score': 11.53}, {'connected_gene': 'LOC105374790', 'score': 0.37}, {'connected_gene': 'ARHGAP25', 'score': 0.2}]
chr2	GH02I068747	68747201	68748200	0.58	[{'connected_gene': 'LINC01888', 'score': 10.49}, {'connected_gene': 'LOC105374790', 'score': 0.37}, {'connected_gene': 'ARHGAP25', 'score': 0.2}]
chr2	GH02I068757	68757970	68760500	0.31	[{'connected_gene': 'LINC01888', 'score': 11.66}, {'connected_gene': 'LOC105374790', 'score': 0.77}, {'connected_gene': 'ARHGAP25', 'score': 0.18}]
chr2	GH02I068749	68749041	68749968	0.2	[{'connected_gene': 'LINC01888', 'score': 10.61}, {'connected_gene': 'LOC105374790', 'score': 0.39}, {'connected_gene': 'ARHGAP25', 'score': 0.2}]
chr2	GH02I068820	68820931	68827440	0.38	[{'connected_gene': 'LINC01890', 'score': 13.63}, {'connected_gene': 'ARHGAP25', 'score': 5.62}, {'connected_gene': 'LINC01888', 'score': 0.44}, {'connected_gene': 'LOC105374790', 'score': 0.21}]
chr2	GH02I068815	68815356	68820865	0.46	[{'connected_gene': 'LINC01890', 'score': 8.14}, {'connected_gene': 'ARHGAP25', 'score': 5.6}, {'connected_gene': 'LINC01888', 'score': 0.39}, {'connected_gene': 'LOC105374790', 'score': 0.22}]
chr2	GH02I068730	68730697	68731597	0.86	[{'connected_gene': 'LOC105374790', 'score': 0.29}, {'connected_gene': 'ARHGAP25', 'score': 0.23}]
chr2	GH02I068755	68755974	68756503	0.2	[{'connected_gene': 'LOC105374790', 'score': 0.44}, {'connected_gene': 'ARHGAP25', 'score': 0.18}]
chr2	GH02I068728	68728767	68729478	0.31	[{'connected_gene': 'LOC105374790', 'score': 0.29}, {'connected_gene': 'ARHGAP25', 'score': 0.25}]
chr2	GH02I068726	68726186	68728487	1.02	[{'connected_gene': 'LOC105374790', 'score': 0.28}, {'connected_gene': 'ARHGAP25', 'score': 0.25}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000463483	[[68906732, 68906861], [68937636, 68937830], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043285, 69043443]]	[[69002369, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043285, 69043408]]
ENST00000481684	[[68906977, 68907227], [68937636, 68937830], [68984769, 68984862], [69002352, 69002552], [69009364, 69009452], [69014971, 69015054]]	None
ENST00000491237	[[68907093, 68907227], [68937636, 68937830], [69002352, 69002552], [69009364, 69009418]]	None
ENST00000544262	[[68937633, 68937830], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043285, 69043443]]	[[69002369, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043285, 69043408]]
ENST00000295381	[[68961912, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053948]]	[[68962331, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000409202	[[68961966, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[68962331, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000456116	[[68961996, 68962392], [69002352, 69002552], [69009364, 69009452], [69034404, 69034612], [69040418, 69040526]]	None
ENST00000467265	[[68962013, 68962392], [69002352, 69002552], [69009364, 69009452], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053434]]	[[68962331, 68962392], [69002352, 69002552], [69009364, 69009452], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000485573	[[68962083, 68962392], [68984769, 68984862], [69002352, 69002549]]	None
ENST00000488795	[[68962207, 68962392], [69002352, 69002552], [69034404, 69034612], [69040418, 69040551], [69043420, 69043684]]	[[68962331, 68962392], [69002352, 69002552], [69034404, 69034563]]
ENST00000463061	[[68962240, 68962392], [68984769, 68984862], [69001977, 69002270]]	None
ENST00000485700	[[68962443, 68962671], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612]]	None
ENST00000496266	[[68962508, 68962671], [69001977, 69002371]]	None
ENST00000409030	[[69001932, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[69002312, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000409220	[[69001932, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[69002312, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000473986	[[69002035, 69002488], [69002736, 69002904], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040420, 69040551], [69043420, 69043494], [69045004, 69045127]]	[[69002312, 69002488], [69002736, 69002818]]
ENST00000497079	[[69002071, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046874]]	[[69002312, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046649]]
ENST00000497259	[[69034362, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053905]]	[[69034362, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
ENST00000479844	[[69043833, 69044067], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[69045044, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
NM_001166277	[[68961912, 68962392], [69002352, 69002552], [69009364, 69009452], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[68962331, 68962392], [69002352, 69002552], [69009364, 69009452], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
NM_001007231	[[68961912, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[68962331, 68962392], [69002352, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
NM_014882	[[69001932, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[69002312, 69002552], [69009364, 69009452], [69014971, 69015088], [69034407, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]
NM_001166276	[[69001932, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053965]]	[[69002312, 69002552], [69009364, 69009452], [69014971, 69015088], [69034404, 69034612], [69040418, 69040551], [69043420, 69043494], [69045004, 69045126], [69046254, 69046451], [69049471, 69050004], [69053118, 69053326]]