PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000480212	[[160625363, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160637945, 160638043], [160639869, 160639980], [160654642, 160654753]]	None
ENST00000259053	[[160625363, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160639869, 160639980], [160654642, 160654753]]	[[160628361, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160639869, 160639980], [160654642, 160654709]]
ENST00000429078	[[160628099, 160628564], [160634448, 160634475], [160637392, 160637509], [160639869, 160639980], [160654642, 160654753]]	[[160628361, 160628564], [160634448, 160634475], [160637392, 160637509], [160639869, 160639980], [160654642, 160654709]]
NM_014880	[[160625138, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160639869, 160639980], [160654642, 160654766]]	[[160628361, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160639869, 160639980], [160654642, 160654709]]
NM_001198763	[[160625138, 160628564], [160634448, 160634475], [160637392, 160637509], [160639869, 160639980], [160654642, 160654766]]	[[160628361, 160628564], [160634448, 160634475], [160637392, 160637509], [160639869, 160639980], [160654642, 160654709]]
NM_001198764	[[160625138, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160654642, 160654766]]	[[160628361, 160628564], [160634448, 160634475], [160636515, 160636689], [160637392, 160637509], [160654642, 160654709]]

Promoter

Chrom	Start	End	Description
chr2	160654706	160654744	CAGE_peak_1_at_CD302_5end
chr2	160654745	160654764	CAGE_peak_2_at_CD302_5end
chr2	160654889	160654912	CAGE_peak_3_at_CD302_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I159773	159773143	159775858	0.43	[{'connected_gene': 'CD302', 'score': 17.44}, {'connected_gene': 'ENSG00000226266', 'score': 13.35}, {'connected_gene': 'MARCH7', 'score': 10.04}, {'connected_gene': 'BAZ2B', 'score': 9.29}, {'connected_gene': 'ITGB6', 'score': 7.64}, {'connected_gene': 'LY75', 'score': 7.47}, {'connected_gene': 'PLA2R1', 'score': 7.25}, {'connected_gene': 'GC02P159769', 'score': 0.77}, {'connected_gene': 'LY75-CD302', 'score': 0.12}]
chr2	GH02I159762	159762934	159764204	0.2	[{'connected_gene': 'CD302', 'score': 11.18}, {'connected_gene': 'LY75', 'score': 4.28}, {'connected_gene': 'GC02P159769', 'score': 0.44}, {'connected_gene': 'MARCH7', 'score': 0.23}]
chr2	GH02I159795	159795402	159798801	2.18	[{'connected_gene': 'CD302', 'score': 555.24}, {'connected_gene': 'ENSG00000226266', 'score': 10.82}, {'connected_gene': 'ITGB6', 'score': 8.32}, {'connected_gene': 'BAZ2B', 'score': 8.29}, {'connected_gene': 'LY75', 'score': 7.45}, {'connected_gene': 'PLA2R1', 'score': 7.41}, {'connected_gene': 'MARCH7', 'score': 7.3}, {'connected_gene': 'GC02P159769', 'score': 0.31}, {'connected_gene': 'LY75-CD302', 'score': 0.14}]
chr2	GH02I159788	159788370	159788519	0.84	[{'connected_gene': 'CD302', 'score': 0.44}, {'connected_gene': 'GC02P159769', 'score': 0.37}, {'connected_gene': 'LY75-CD302', 'score': 0.13}]
chr2	GH02I159764	159764387	159767513	0.2	[{'connected_gene': 'MARCH7', 'score': 16.96}, {'connected_gene': 'ENSG00000226266', 'score': 13.52}, {'connected_gene': 'CD302', 'score': 11.96}, {'connected_gene': 'BAZ2B', 'score': 9.32}, {'connected_gene': 'LY75', 'score': 7.78}, {'connected_gene': 'PLA2R1', 'score': 7.25}, {'connected_gene': 'GC02P159769', 'score': 0.77}]
chr2	GH02I159771	159771505	159772751	0.2	[{'connected_gene': 'MARCH7', 'score': 16.78}, {'connected_gene': 'ENSG00000226266', 'score': 13.37}, {'connected_gene': 'CD302', 'score': 12.0}, {'connected_gene': 'BAZ2B', 'score': 9.3}, {'connected_gene': 'ITGB6', 'score': 7.64}, {'connected_gene': 'PLA2R1', 'score': 7.25}, {'connected_gene': 'LY75', 'score': 6.23}, {'connected_gene': 'GC02P159769', 'score': 0.77}, {'connected_gene': 'LY75-CD302', 'score': 0.12}]
chr2	GH02I159744	159744167	159745267	0.38	[{'connected_gene': 'MARCH7', 'score': 17.07}, {'connected_gene': 'ENSG00000226266', 'score': 14.07}, {'connected_gene': 'CD302', 'score': 11.03}, {'connected_gene': 'BAZ2B', 'score': 9.39}, {'connected_gene': 'PLA2R1', 'score': 7.56}, {'connected_gene': 'LY75', 'score': 5.53}, {'connected_gene': 'GC02P159769', 'score': 0.31}]
chr2	GH02I159786	159786692	159787829	0.31	[{'connected_gene': 'MARCH7', 'score': 16.75}, {'connected_gene': 'CD302', 'score': 0.39}, {'connected_gene': 'GC02P159769', 'score': 0.37}, {'connected_gene': 'LY75-CD302', 'score': 0.13}]
chr2	GH02I159737	159737581	159739273	0.56	[{'connected_gene': 'MARCH7', 'score': 14.62}, {'connected_gene': 'ENSG00000226266', 'score': 13.48}, {'connected_gene': 'BAZ2B', 'score': 9.9}, {'connected_gene': 'CD302', 'score': 7.45}, {'connected_gene': 'LY75', 'score': 7.45}, {'connected_gene': 'PLA2R1', 'score': 7.24}, {'connected_gene': 'GC02P159769', 'score': 0.29}]
chr2	GH02I159747	159747933	159748949	0.31	[{'connected_gene': 'MARCH7', 'score': 13.58}, {'connected_gene': 'BAZ2B', 'score': 8.99}, {'connected_gene': 'CD302', 'score': 7.48}, {'connected_gene': 'GC02P159769', 'score': 0.34}]
chr2	GH02I159801	159801601	159802600	0.76	[{'connected_gene': 'MARCH7', 'score': 12.33}, {'connected_gene': 'BAZ2B', 'score': 8.43}, {'connected_gene': 'LOC643072', 'score': 7.54}, {'connected_gene': 'CD302', 'score': 0.77}, {'connected_gene': 'ENSG00000227055', 'score': 0.39}, {'connected_gene': 'LY75-CD302', 'score': 0.15}]
chr2	GH02I159777	159777797	159779175	0.31	[{'connected_gene': 'MARCH7', 'score': 16.72}, {'connected_gene': 'ENSG00000226266', 'score': 13.43}, {'connected_gene': 'BAZ2B', 'score': 9.15}, {'connected_gene': 'LY75', 'score': 7.1}, {'connected_gene': 'GC02P159769', 'score': 0.44}, {'connected_gene': 'CD302', 'score': 0.37}, {'connected_gene': 'LY75-CD302', 'score': 0.13}]
chr2	GH02I159782	159782366	159786464	0.38	[{'connected_gene': 'MARCH7', 'score': 16.72}, {'connected_gene': 'BAZ2B', 'score': 9.29}, {'connected_gene': 'PLA2R1', 'score': 7.02}, {'connected_gene': 'LOC643072', 'score': 6.95}, {'connected_gene': 'LY75', 'score': 5.91}, {'connected_gene': 'OR7E28P', 'score': 4.27}, {'connected_gene': 'GC02P159769', 'score': 0.39}, {'connected_gene': 'CD302', 'score': 0.39}, {'connected_gene': 'LY75-CD302', 'score': 0.13}]
chr2	GH02I159792	159792801	159794200	0.4	[{'connected_gene': 'LY75', 'score': 4.86}, {'connected_gene': 'CD302', 'score': 0.77}, {'connected_gene': 'GC02P159769', 'score': 0.34}, {'connected_gene': 'LY75-CD302', 'score': 0.14}]
chr2	GH02I160201	160201978	160211816	1.58	[{'connected_gene': 'LY75', 'score': 19.1}, {'connected_gene': 'ITGB6', 'score': 17.61}, {'connected_gene': 'LINC02478', 'score': 11.47}, {'connected_gene': 'RBMS1', 'score': 11.32}, {'connected_gene': 'ENSG00000226266', 'score': 5.98}, {'connected_gene': 'PLA2R1', 'score': 5.61}, {'connected_gene': 'CD302', 'score': 1.55}, {'connected_gene': 'PIR61464', 'score': 0.22}]
chr2	GH02I159855	159855401	159856073	0.44	[{'connected_gene': 'LY75', 'score': 20.17}, {'connected_gene': 'BAZ2B', 'score': 14.03}, {'connected_gene': 'MARCH7', 'score': 7.98}, {'connected_gene': 'CD302', 'score': 4.53}, {'connected_gene': 'ENSG00000227055', 'score': 0.26}, {'connected_gene': 'LY75-CD302', 'score': 0.25}]
chr2	GH02I159496	159496601	159498322	1.52	[{'connected_gene': 'ITGB6', 'score': 6.72}, {'connected_gene': 'LOC643072', 'score': 6.45}, {'connected_gene': 'CD302', 'score': 2.45}, {'connected_gene': 'MARCH7', 'score': 1.87}, {'connected_gene': 'ENSG00000225369', 'score': 0.29}, {'connected_gene': 'LOC100422294', 'score': 0.29}, {'connected_gene': 'ENSG00000207117', 'score': 0.28}, {'connected_gene': 'BAZ2B', 'score': 0.08}]
chr2	GH02I160219	160219278	160230701	1.62	[{'connected_gene': 'ITGB6', 'score': 24.6}, {'connected_gene': 'LY75', 'score': 17.99}, {'connected_gene': 'PLA2R1', 'score': 11.97}, {'connected_gene': 'LINC02478', 'score': 11.72}, {'connected_gene': 'RBMS1', 'score': 11.53}, {'connected_gene': 'CD302', 'score': 5.76}, {'connected_gene': 'PIR61464', 'score': 0.28}]
chr2	GH02I160287	160287342	160295838	1.32	[{'connected_gene': 'ITGB6', 'score': 24.93}, {'connected_gene': 'PLA2R1', 'score': 13.09}, {'connected_gene': 'RBMS1', 'score': 12.16}, {'connected_gene': 'CD302', 'score': 3.33}, {'connected_gene': 'LINC02478', 'score': 0.37}, {'connected_gene': 'GC02M160337', 'score': 0.25}]
chr2	GH02I159515	159515229	159517180	1.83	[{'connected_gene': 'BAZ2B', 'score': 15.59}, {'connected_gene': 'MARCH7', 'score': 9.55}, {'connected_gene': 'CD302', 'score': 6.12}, {'connected_gene': 'LY75', 'score': 1.7}, {'connected_gene': 'ENSG00000207117', 'score': 0.34}, {'connected_gene': 'LOC100422294', 'score': 0.23}, {'connected_gene': 'ENSG00000225369', 'score': 0.23}]
chr2	GH02I159494	159494139	159494495	0.22	[{'connected_gene': 'BAZ2B', 'score': 2.43}, {'connected_gene': 'MARCH7', 'score': 1.68}, {'connected_gene': 'CD302', 'score': 1.57}, {'connected_gene': 'LOC100422294', 'score': 0.29}, {'connected_gene': 'ENSG00000225369', 'score': 0.29}, {'connected_gene': 'ENSG00000207117', 'score': 0.26}]
chr2	GH02I159710	159710490	159715511	2.33	[{'connected_gene': 'BAZ2B', 'score': 594.14}, {'connected_gene': 'ENSG00000226266', 'score': 584.01}, {'connected_gene': 'MARCH7', 'score': 582.53}, {'connected_gene': 'LOC643072', 'score': 20.46}, {'connected_gene': 'LY75', 'score': 11.75}, {'connected_gene': 'CD302', 'score': 11.19}, {'connected_gene': 'PLA2R1', 'score': 7.24}, {'connected_gene': 'GC02P159769', 'score': 0.22}]
chr2	GH02I159790	159790369	159790579	0.68	[{'connected_gene': 'BAZ2B', 'score': 8.44}, {'connected_gene': 'MARCH7', 'score': 7.75}, {'connected_gene': 'LY75', 'score': 4.86}, {'connected_gene': 'CD302', 'score': 0.44}, {'connected_gene': 'GC02P159769', 'score': 0.34}, {'connected_gene': 'LY75-CD302', 'score': 0.14}]
chr2	GH02I159753	159753781	159756838	0.96	[{'connected_gene': 'BAZ2B', 'score': 18.77}, {'connected_gene': 'WDSUB1', 'score': 14.7}, {'connected_gene': 'CD302', 'score': 7.5}, {'connected_gene': 'PLA2R1', 'score': 7.24}, {'connected_gene': 'LY75', 'score': 5.54}, {'connected_gene': 'GC02P159769', 'score': 0.39}, {'connected_gene': 'MARCH7', 'score': 0.26}]
chr2	GH02I159285	159285451	159287740	2.06	[{'connected_gene': 'WDSUB1', 'score': 585.85}, {'connected_gene': 'PLA2R1', 'score': 13.48}, {'connected_gene': 'MARCH7', 'score': 12.15}, {'connected_gene': 'BAZ2B', 'score': 10.27}, {'connected_gene': 'CD302', 'score': 4.44}, {'connected_gene': 'LY75', 'score': 4.08}, {'connected_gene': 'LOC105373716', 'score': 0.23}]
chr2	GH02I159767	159767877	159770847	0.49	[{'connected_gene': 'GC02P159769', 'score': 550.77}, {'connected_gene': 'MARCH7', 'score': 16.74}, {'connected_gene': 'CD302', 'score': 11.7}, {'connected_gene': 'ENSG00000226266', 'score': 11.05}, {'connected_gene': 'BAZ2B', 'score': 9.09}, {'connected_gene': 'PLA2R1', 'score': 7.75}, {'connected_gene': 'ITGB6', 'score': 7.08}, {'connected_gene': 'LY75', 'score': 6.23}, {'connected_gene': 'LY75-CD302', 'score': 0.12}]
chr2	GH02I159362	159362295	159364333	1.06	[{'connected_gene': 'ENSG00000223642', 'score': 10.92}, {'connected_gene': 'ITGB6', 'score': 5.77}, {'connected_gene': 'LY75', 'score': 4.74}, {'connected_gene': 'OR7E28P', 'score': 4.04}, {'connected_gene': 'CD302', 'score': 3.56}, {'connected_gene': 'MARCH7', 'score': 1.95}, {'connected_gene': 'WDSUB1', 'score': 0.18}, {'connected_gene': 'BAZ2B', 'score': 0.05}]