PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000441478	[[110012498, 110012704], [110036280, 110036379], [110053839, 110053890], [110056352, 110056501], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110146290, 110146627]]	[[110036371, 110036379], [110053839, 110053890], [110056352, 110056501], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110146290, 110146468]]
ENST00000230124	[[110012514, 110012704], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656], [110062646, 110062747], [110064312, 110064475], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110117967, 110118054], [110146290, 110146631]]	[[110012638, 110012704], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656], [110062646, 110062747], [110064312, 110064475], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110117967, 110118054], [110146290, 110146468]]
ENST00000415980	[[110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110106873, 110106947]]	[[110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110106873, 110106917]]
ENST00000454215	[[110022922, 110022925], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656]]	[[110022922, 110022925], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656]]
ENST00000368941	[[110037708, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110064312, 110064683]]	[[110037713, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110064312, 110064317]]
ENST00000419951	[[110107208, 110107652], [110110796, 110110880], [110112578, 110112774]]	[[110107635, 110107652], [110110796, 110110880], [110112578, 110112774]]
NM_014845	[[110012423, 110012704], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656], [110062646, 110062747], [110064312, 110064475], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110117967, 110118054], [110146290, 110146634]]	[[110012638, 110012704], [110036280, 110036379], [110037647, 110037771], [110048311, 110048468], [110053839, 110053890], [110056352, 110056501], [110059527, 110059656], [110062646, 110062747], [110064312, 110064475], [110064877, 110064975], [110081452, 110081586], [110083293, 110083410], [110085139, 110085185], [110086215, 110086364], [110087931, 110088098], [110098124, 110098263], [110106172, 110106231], [110107504, 110107652], [110110796, 110110880], [110112578, 110112774], [110113784, 110113867], [110117967, 110118054], [110146290, 110146468]]

Promoter

Chrom	Start	End	Description
chr6	110012462	110012525	CAGE_peak_1_at_FIG4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I109705	109705298	109705467	0.83	[{'connected_gene': 'ZBTB24', 'score': 9.97}, {'connected_gene': 'LOC105377935', 'score': 9.97}, {'connected_gene': 'FIG4', 'score': 0.39}, {'connected_gene': 'GC06M109753', 'score': 0.25}]
chr6	GH06I109697	109697200	109697631	0.75	[{'connected_gene': 'ZBTB24', 'score': 10.65}, {'connected_gene': 'LOC105377935', 'score': 10.65}, {'connected_gene': 'FIG4', 'score': 0.44}, {'connected_gene': 'GC06M109753', 'score': 0.22}]
chr6	GH06I109701	109701202	109702198	0.31	[{'connected_gene': 'ZBTB24', 'score': 10.66}, {'connected_gene': 'LOC105377935', 'score': 10.66}, {'connected_gene': 'FIG4', 'score': 0.39}, {'connected_gene': 'GC06M109753', 'score': 0.23}]
chr6	GH06I110178	110178400	110182583	2.34	[{'connected_gene': 'WASF1', 'score': 568.91}, {'connected_gene': 'CDC40', 'score': 555.04}, {'connected_gene': 'ZBTB24', 'score': 24.5}, {'connected_gene': 'CD164', 'score': 11.12}, {'connected_gene': 'SMPD2', 'score': 10.9}, {'connected_gene': 'CNN2P9', 'score': 10.12}, {'connected_gene': 'FIG4', 'score': 1.54}]
chr6	GH06I109508	109508191	109508857	0.43	[{'connected_gene': 'SMPD2', 'score': 13.34}, {'connected_gene': 'FIG4', 'score': 4.53}, {'connected_gene': 'ZBTB24', 'score': 0.31}, {'connected_gene': 'AK9', 'score': 0.09}]
chr6	GH06I109743	109743747	109744496	0.38	[{'connected_gene': 'SMPD2', 'score': 10.92}, {'connected_gene': 'FIG4', 'score': 10.07}, {'connected_gene': 'GC06M109753', 'score': 0.44}]
chr6	GH06I109424	109424261	109425247	0.77	[{'connected_gene': 'SMPD2', 'score': 22.1}, {'connected_gene': 'ENSG00000260273', 'score': 14.25}, {'connected_gene': 'ZBTB24', 'score': 10.96}, {'connected_gene': 'CEP57L1', 'score': 10.76}, {'connected_gene': 'FIG4', 'score': 5.6}, {'connected_gene': 'PPIL6', 'score': 0.37}, {'connected_gene': 'PIR52905', 'score': 0.28}, {'connected_gene': 'GC06P109389', 'score': 0.28}]
chr6	GH06I109771	109771208	109773820	1.34	[{'connected_gene': 'SMPD2', 'score': 14.04}, {'connected_gene': 'ZBTB24', 'score': 10.8}, {'connected_gene': 'CEP57L1', 'score': 10.73}, {'connected_gene': 'FIG4', 'score': 10.11}, {'connected_gene': 'ENSG00000260273', 'score': 9.97}, {'connected_gene': 'CCDC162P', 'score': 8.49}, {'connected_gene': 'MICAL1', 'score': 3.23}, {'connected_gene': 'CDC40', 'score': 1.78}, {'connected_gene': 'AK9', 'score': 1.48}, {'connected_gene': 'CD164', 'score': 1.25}, {'connected_gene': 'GC06M109753', 'score': 0.37}, {'connected_gene': 'ENSG00000232311', 'score': 0.23}]
chr6	GH06I109343	109343546	109345007	0.77	[{'connected_gene': 'SMPD2', 'score': 21.85}, {'connected_gene': 'ENSG00000260273', 'score': 11.62}, {'connected_gene': 'MICAL1', 'score': 9.28}, {'connected_gene': 'FIG4', 'score': 5.9}, {'connected_gene': 'LOC101927538', 'score': 0.44}, {'connected_gene': 'RPL7P28', 'score': 0.37}, {'connected_gene': 'CCDC162P', 'score': 0.1}]
chr6	GH06I109438	109438892	109442315	2.03	[{'connected_gene': 'SMPD2', 'score': 582.21}, {'connected_gene': 'PPIL6', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 26.73}, {'connected_gene': 'ENSG00000260273', 'score': 13.0}, {'connected_gene': 'AK9', 'score': 10.5}, {'connected_gene': 'MICAL1', 'score': 5.65}, {'connected_gene': 'FIG4', 'score': 5.18}, {'connected_gene': 'PIR52905', 'score': 0.23}, {'connected_gene': 'GC06P109389', 'score': 0.23}]
chr6	GH06I109706	109706601	109707000	0.2	[{'connected_gene': 'SMPD2', 'score': 21.09}, {'connected_gene': 'AK9', 'score': 14.89}, {'connected_gene': 'ZBTB24', 'score': 9.97}, {'connected_gene': 'LOC105377935', 'score': 9.97}, {'connected_gene': 'FIG4', 'score': 0.37}, {'connected_gene': 'GC06M109753', 'score': 0.25}]
chr6	GH06I109453	109453244	109461075	2.67	[{'connected_gene': 'MICAL1', 'score': 567.49}, {'connected_gene': 'SMPD2', 'score': 25.09}, {'connected_gene': 'ZBTB24', 'score': 23.32}, {'connected_gene': 'METTL24', 'score': 13.62}, {'connected_gene': 'ENSG00000260273', 'score': 13.29}, {'connected_gene': 'LOC105377935', 'score': 11.31}, {'connected_gene': 'FOXO3', 'score': 9.8}, {'connected_gene': 'FIG4', 'score': 4.91}, {'connected_gene': 'PPIL6', 'score': 2.34}, {'connected_gene': 'CD164', 'score': 2.08}, {'connected_gene': 'PIR52480', 'score': 0.77}]
chr6	GH06I109891	109891246	109895555	1.05	[{'connected_gene': 'PPIL6', 'score': 6.12}, {'connected_gene': 'LOC105377938', 'score': 5.24}, {'connected_gene': 'FIG4', 'score': 2.24}, {'connected_gene': 'MICAL1', 'score': 1.86}, {'connected_gene': 'AK9', 'score': 1.59}, {'connected_gene': 'SMPD2', 'score': 1.31}, {'connected_gene': 'PIR51283', 'score': 0.39}, {'connected_gene': 'GPR6', 'score': 0.18}]
chr6	GH06I109690	109690000	109692201	2	[{'connected_gene': 'AK9', 'score': 565.51}, {'connected_gene': 'FIG4', 'score': 550.77}, {'connected_gene': 'SMPD2', 'score': 31.13}, {'connected_gene': 'ZBTB24', 'score': 14.56}, {'connected_gene': 'ENSG00000260273', 'score': 12.23}]
chr6	GH06I109767	109767904	109768882	0.2	[{'connected_gene': 'AK9', 'score': 13.64}, {'connected_gene': 'ENSG00000260273', 'score': 12.53}, {'connected_gene': 'FIG4', 'score': 10.05}, {'connected_gene': 'GC06M109753', 'score': 0.37}, {'connected_gene': 'ENSG00000232311', 'score': 0.22}]
chr6	GH06I109735	109735857	109737080	0.38	[{'connected_gene': 'AK9', 'score': 13.7}, {'connected_gene': 'GC06M109753', 'score': 0.37}, {'connected_gene': 'FIG4', 'score': 0.25}]
chr6	GH06I109702	109702401	109703001	0.38	[{'connected_gene': 'AK9', 'score': 14.92}, {'connected_gene': 'FIG4', 'score': 0.39}, {'connected_gene': 'GC06M109753', 'score': 0.23}]
chr6	GH06I109792	109792962	109795447	1.02	[{'connected_gene': 'CCDC162P', 'score': 4.93}, {'connected_gene': 'ENSG00000232311', 'score': 0.29}, {'connected_gene': 'GC06M109753', 'score': 0.26}, {'connected_gene': 'FIG4', 'score': 0.15}]
chr6	GH06I109349	109349128	109352487	1.49	[{'connected_gene': 'LOC101927538', 'score': 550.77}, {'connected_gene': 'SMPD2', 'score': 19.36}, {'connected_gene': 'ENSG00000260273', 'score': 15.51}, {'connected_gene': 'CD164', 'score': 12.21}, {'connected_gene': 'ENSG00000233908', 'score': 11.92}, {'connected_gene': 'PTCHD3P3', 'score': 11.92}, {'connected_gene': 'CCDC162P', 'score': 11.8}, {'connected_gene': 'MICAL1', 'score': 10.55}, {'connected_gene': 'FIG4', 'score': 4.16}, {'connected_gene': 'RPL7P28', 'score': 0.34}]
chr6	GH06I109334	109334538	109335889	0.2	[{'connected_gene': 'PTCHD3P3', 'score': 11.66}, {'connected_gene': 'ENSG00000233908', 'score': 11.65}, {'connected_gene': 'CCDC162P', 'score': 11.5}, {'connected_gene': 'CD164', 'score': 11.17}, {'connected_gene': 'FIG4', 'score': 4.14}, {'connected_gene': 'RPL7P28', 'score': 0.44}, {'connected_gene': 'LOC101927538', 'score': 0.37}]
chr6	GH06I109772	109771001	109771200	0.2	[{'connected_gene': 'GC06M109753', 'score': 0.37}, {'connected_gene': 'ENSG00000232311', 'score': 0.22}, {'connected_gene': 'FIG4', 'score': 0.18}]
chr6	GH06I109789	109789887	109791746	0.51	[{'connected_gene': 'ENSG00000232311', 'score': 0.28}, {'connected_gene': 'GC06M109753', 'score': 0.28}, {'connected_gene': 'FIG4', 'score': 0.15}]
chr6	GH06I109379	109379218	109385489	2.33	[{'connected_gene': 'ENSG00000260273', 'score': 565.43}, {'connected_gene': 'CD164', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 52.31}, {'connected_gene': 'SMPD2', 'score': 32.79}, {'connected_gene': 'MICAL1', 'score': 13.55}, {'connected_gene': 'AK9', 'score': 12.44}, {'connected_gene': 'PPIL6', 'score': 11.82}, {'connected_gene': 'ENSG00000233908', 'score': 10.45}, {'connected_gene': 'PTCHD3P3', 'score': 10.45}, {'connected_gene': 'CCDC162P', 'score': 10.37}, {'connected_gene': 'LOC105377935', 'score': 10.11}, {'connected_gene': 'CDC40', 'score': 9.86}, {'connected_gene': 'ENSG00000271730', 'score': 9.69}, {'connected_gene': 'FIG4', 'score': 5.38}, {'connected_gene': 'LOC101927538', 'score': 0.29}]