PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000262460	[[25388362, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25405846, 25405963], [25422337, 25422412], [25426558, 25429191]]	[[25388456, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25405846, 25405963], [25422337, 25422412], [25426558, 25426627]]
ENST00000481735	[[25423659, 25423751], [25426558, 25426675], [25433077, 25433264]]	None
ENST00000429262	[[25388364, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25400319, 25400441], [25405846, 25405963], [25422337, 25422412], [25426558, 25426978]]	[[25388456, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25400319, 25400441], [25405846, 25405892]]
ENST00000484893	[[25388366, 25388531], [25391759, 25391922], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831]]	None
ENST00000473460	[[25394092, 25394490], [25397739, 25397882]]	None
NM_021067	[[25388318, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25405846, 25405963], [25422337, 25422412], [25426558, 25429191]]	[[25388456, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25405846, 25405963], [25422337, 25422412], [25426558, 25426627]]
NR_134574	[[25388318, 25388531], [25394425, 25394490], [25397739, 25397838], [25398740, 25398831], [25400319, 25400441], [25405846, 25405963], [25422337, 25422412], [25426558, 25429191]]	None

Promoter

Chrom	Start	End	Description
chr20	25388293	25388372	CAGE_peak_1_at_GINS1_5end
chr20	25388389	25388400	CAGE_peak_2_at_GINS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I025406	25406985	25409441	2.07	[{'connected_gene': 'GINS1', 'score': 550.77}, {'connected_gene': 'LOC105372581', 'score': 550.77}, {'connected_gene': 'PIR61298', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 32.41}, {'connected_gene': 'NANP', 'score': 20.79}, {'connected_gene': 'PYGB', 'score': 20.47}, {'connected_gene': 'ZNF337', 'score': 10.48}, {'connected_gene': 'FAM182B', 'score': 10.13}, {'connected_gene': 'ZNF337-AS1', 'score': 9.78}]
chr20	GH20I025436	25436665	25437649	0.31	[{'connected_gene': 'ENTPD6', 'score': 11.66}, {'connected_gene': 'PIR61820', 'score': 0.44}, {'connected_gene': 'GINS1', 'score': 0.31}, {'connected_gene': 'GC20P025489', 'score': 0.23}]
chr20	GH20I025089	25089949	25092411	0.92	[{'connected_gene': 'ACSS1', 'score': 15.4}, {'connected_gene': 'VSX1', 'score': 14.19}, {'connected_gene': 'PYGB', 'score': 5.3}, {'connected_gene': 'GINS1', 'score': 1.27}, {'connected_gene': 'LOC391239', 'score': 0.44}]
chr20	GH20I025321	25321154	25322354	0.84	[{'connected_gene': 'ABHD12', 'score': 33.87}, {'connected_gene': 'GINS1', 'score': 12.09}, {'connected_gene': 'PYGB', 'score': 10.62}, {'connected_gene': 'NANP', 'score': 4.29}, {'connected_gene': 'GC20P025297', 'score': 0.34}, {'connected_gene': 'GC20P025348', 'score': 0.31}]
chr20	GH20I025375	25375132	25379927	0.87	[{'connected_gene': 'ABHD12', 'score': 39.42}, {'connected_gene': 'PYGB', 'score': 31.22}, {'connected_gene': 'GINS1', 'score': 13.33}, {'connected_gene': 'NINL', 'score': 11.87}, {'connected_gene': 'ZNF337', 'score': 10.38}, {'connected_gene': 'PPIAP2', 'score': 0.44}]
chr20	GH20I025397	25397197	25399646	1	[{'connected_gene': 'PIR58540', 'score': 550.77}, {'connected_gene': 'ABHD12', 'score': 34.28}, {'connected_gene': 'PYGB', 'score': 20.48}, {'connected_gene': 'ENTPD6', 'score': 11.64}, {'connected_gene': 'ZNF337', 'score': 9.84}, {'connected_gene': 'GINS1', 'score': 0.44}, {'connected_gene': 'LOC105372581', 'score': 0.39}]