PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374518	[[43278248, 43278278], [43279809, 43280018], [43280929, 43281120], [43282615, 43282695], [43285770, 43285959], [43287074, 43287217], [43287940, 43288062], [43288404, 43288592], [43289299, 43289439], [43291921, 43292679], [43292869, 43292971], [43293915, 43294073], [43297584, 43297666], [43312046, 43312120], [43312765, 43312942], [43315683, 43315872], [43315955, 43316136], [43316381, 43316440], [43317509, 43317632], [43318565, 43318713], [43319056, 43319232], [43325708, 43325870], [43326313, 43330385]]	[[43279842, 43280018], [43280929, 43281120], [43282615, 43282695], [43285770, 43285959], [43287074, 43287217], [43287940, 43288062], [43288404, 43288592], [43289299, 43289439], [43291921, 43292679], [43292869, 43292971], [43293915, 43294073], [43297584, 43297666], [43312046, 43312120], [43312765, 43312942], [43315683, 43315872], [43315955, 43316136], [43316381, 43316440], [43317509, 43317632], [43318565, 43318713], [43319056, 43319232], [43325708, 43325870], [43326313, 43326544]]
NM_014753	[[43277953, 43278278], [43279809, 43280018], [43280929, 43281120], [43282615, 43282695], [43285770, 43285959], [43287074, 43287217], [43287940, 43288062], [43288404, 43288592], [43289299, 43289439], [43291921, 43292679], [43292869, 43292971], [43293915, 43294073], [43297584, 43297666], [43312046, 43312120], [43312765, 43312942], [43315683, 43315872], [43315955, 43316136], [43316381, 43316440], [43317509, 43317632], [43318565, 43318713], [43319056, 43319232], [43325708, 43325870], [43326313, 43330385]]	[[43279842, 43280018], [43280929, 43281120], [43282615, 43282695], [43285770, 43285959], [43287074, 43287217], [43287940, 43288062], [43288404, 43288592], [43289299, 43289439], [43291921, 43292679], [43292869, 43292971], [43293915, 43294073], [43297584, 43297666], [43312046, 43312120], [43312765, 43312942], [43315683, 43315872], [43315955, 43316136], [43316381, 43316440], [43317509, 43317632], [43318565, 43318713], [43319056, 43319232], [43325708, 43325870], [43326313, 43326544]]

Promoter

Chrom	Start	End	Description
chr10	43278217	43278262	CAGE_peak_1_at_BMS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I042781	42781680	42783841	2.14	[{'connected_gene': 'BMS1', 'score': 609.81}, {'connected_gene': 'GC10M042779', 'score': 550.77}, {'connected_gene': 'ZNF32-AS2', 'score': 45.72}, {'connected_gene': 'ENSG00000273008', 'score': 42.03}, {'connected_gene': 'HNRNPF', 'score': 41.87}, {'connected_gene': 'EIF3LP2', 'score': 37.28}, {'connected_gene': 'ZNF32-AS1', 'score': 33.47}, {'connected_gene': 'ZNF37BP', 'score': 30.76}, {'connected_gene': 'ZNF32', 'score': 27.06}, {'connected_gene': 'LOC100130881', 'score': 23.5}, {'connected_gene': 'ZNF239', 'score': 21.23}, {'connected_gene': 'LOC441666', 'score': 15.79}, {'connected_gene': 'ZNF487', 'score': 10.12}, {'connected_gene': 'LINC00839', 'score': 7.02}, {'connected_gene': 'ENSG00000259869', 'score': 6.54}, {'connected_gene': 'GC10M042762', 'score': 0.39}]
chr10	GH10I043572	43572859	43576747	2	[{'connected_gene': 'ZNF239', 'score': 570.17}, {'connected_gene': 'ZNF32-AS2', 'score': 17.66}, {'connected_gene': 'ZNF33B', 'score': 12.49}, {'connected_gene': 'BMS1', 'score': 11.45}, {'connected_gene': 'ZNF32-AS1', 'score': 10.92}, {'connected_gene': 'ZNF487', 'score': 7.27}, {'connected_gene': 'CAP1P2', 'score': 0.29}]
chr10	GH10I042826	42826673	42828022	0.38	[{'connected_gene': 'LOC441666', 'score': 6.93}, {'connected_gene': 'CCNYL2', 'score': 3.9}, {'connected_gene': 'RNU6-885P', 'score': 0.44}, {'connected_gene': 'PIR61313', 'score': 0.44}, {'connected_gene': 'BMS1', 'score': 0.26}]
chr10	GH10I043392	43392519	43410859	2.83	[{'connected_gene': 'HNRNPF', 'score': 590.81}, {'connected_gene': 'EIF3LP2', 'score': 52.89}, {'connected_gene': 'BMS1', 'score': 52.73}, {'connected_gene': 'ZNF32-AS2', 'score': 46.32}, {'connected_gene': 'HNRNPA3P1', 'score': 44.36}, {'connected_gene': 'ZNF37BP', 'score': 34.94}, {'connected_gene': 'ZNF33B', 'score': 32.19}, {'connected_gene': 'ZNF32-AS1', 'score': 31.5}, {'connected_gene': 'ZNF32', 'score': 20.89}, {'connected_gene': 'LOC105378272', 'score': 16.36}, {'connected_gene': 'ENSG00000273008', 'score': 15.39}, {'connected_gene': 'ZNF239', 'score': 13.19}, {'connected_gene': 'RASGEF1A', 'score': 4.7}, {'connected_gene': 'PIR56810', 'score': 0.39}]
chr10	GH10I043385	43384713	43384762	0.92	[{'connected_gene': 'HNRNPF', 'score': 22.88}, {'connected_gene': 'HNRNPA3P1', 'score': 20.46}, {'connected_gene': 'EIF3LP2', 'score': 20.05}, {'connected_gene': 'RASGEF1A', 'score': 11.21}, {'connected_gene': 'BMS1', 'score': 9.65}, {'connected_gene': 'PIR56810', 'score': 0.77}, {'connected_gene': 'FXYD4', 'score': 0.39}]
chr10	GH10I042752	42752944	42755649	1.01	[{'connected_gene': 'LOC283028', 'score': 550.77}, {'connected_gene': 'LOC105378269', 'score': 550.77}, {'connected_gene': 'BMS1', 'score': 12.32}, {'connected_gene': 'ENSG00000259869', 'score': 9.16}]
chr10	GH10I043647	43647193	43649600	1.96	[{'connected_gene': 'LOC105378274', 'score': 550.77}, {'connected_gene': 'ZNF32', 'score': 550.77}, {'connected_gene': 'ZNF32-AS2', 'score': 14.48}, {'connected_gene': 'BMS1', 'score': 12.71}, {'connected_gene': 'ENSG00000273008', 'score': 10.49}, {'connected_gene': 'ZNF32-AS3', 'score': 0.37}, {'connected_gene': 'GC10M043601', 'score': 0.23}]
chr10	GH10I043416	43416508	43422578	2.07	[{'connected_gene': 'LOC105378272', 'score': 566.76}, {'connected_gene': 'GC10P043423', 'score': 550.77}, {'connected_gene': 'BMS1', 'score': 25.25}, {'connected_gene': 'ZNF32-AS2', 'score': 13.27}, {'connected_gene': 'EIF3LP2', 'score': 11.15}, {'connected_gene': 'ZNF33B', 'score': 9.86}, {'connected_gene': 'ZNF239', 'score': 4.36}, {'connected_gene': 'ENSG00000259869', 'score': 4.1}, {'connected_gene': 'HNRNPF', 'score': 1.46}, {'connected_gene': 'CSGALNACT2', 'score': 1.4}, {'connected_gene': 'GC10M043420', 'score': 0.77}, {'connected_gene': 'SNORD3J', 'score': 0.77}]
chr10	GH10I042551	42551638	42553638	1.5	[{'connected_gene': 'ZNF37BP', 'score': 561.03}, {'connected_gene': 'LINC00839', 'score': 22.28}, {'connected_gene': 'ZNF33B', 'score': 14.6}, {'connected_gene': 'BMS1', 'score': 13.34}, {'connected_gene': 'PIR31407', 'score': 0.23}]
chr10	GH10I042815	42815953	42818182	0.38	[{'connected_gene': 'PIR61313', 'score': 550.77}, {'connected_gene': 'LINC00839', 'score': 7.08}, {'connected_gene': 'ENSG00000259869', 'score': 6.44}, {'connected_gene': 'CSGALNACT2', 'score': 4.56}, {'connected_gene': 'GC10M042762', 'score': 0.34}, {'connected_gene': 'BMS1', 'score': 0.29}]
chr10	GH10I042790	42790686	42791440	0.2	[{'connected_gene': 'ENSG00000259869', 'score': 9.08}, {'connected_gene': 'ZNF33B', 'score': 4.03}, {'connected_gene': 'GC10M042762', 'score': 0.77}, {'connected_gene': 'BMS1', 'score': 0.44}]
chr10	GH10I042865	42865777	42867550	0.99	[{'connected_gene': 'GC10P042865', 'score': 550.77}, {'connected_gene': 'ZNF32-AS1', 'score': 16.66}, {'connected_gene': 'ZNF32-AS2', 'score': 14.6}, {'connected_gene': 'ENSG00000273008', 'score': 14.29}, {'connected_gene': 'ZNF37BP', 'score': 11.42}, {'connected_gene': 'ZNF239', 'score': 9.93}, {'connected_gene': 'ENSG00000259869', 'score': 8.88}, {'connected_gene': 'BMS1', 'score': 6.25}, {'connected_gene': 'LOC441666', 'score': 5.69}, {'connected_gene': 'ZNF33B', 'score': 5.1}, {'connected_gene': 'LOC101929445', 'score': 0.77}]
chr10	GH10I043384	43384879	43389493	0.81	[{'connected_gene': 'PIR56810', 'score': 550.77}, {'connected_gene': 'LOC105378272', 'score': 28.85}, {'connected_gene': 'HNRNPF', 'score': 22.88}, {'connected_gene': 'HNRNPA3P1', 'score': 20.46}, {'connected_gene': 'EIF3LP2', 'score': 20.04}, {'connected_gene': 'SNORD3J', 'score': 12.86}, {'connected_gene': 'ZNF487', 'score': 12.81}, {'connected_gene': 'RNU7-193P', 'score': 12.01}, {'connected_gene': 'RASGEF1A', 'score': 11.21}, {'connected_gene': 'BMS1', 'score': 9.65}, {'connected_gene': 'ZNF239', 'score': 4.67}, {'connected_gene': 'FXYD4', 'score': 0.37}]