PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000221972	[[42381189, 42381453], [42383059, 42383359], [42383604, 42383723], [42384736, 42384805], [42384933, 42385439]]	[[42381374, 42381453], [42383059, 42383359], [42383604, 42383723], [42384736, 42384805], [42384933, 42385047]]
ENST00000597454	[[42381349, 42381453], [42383059, 42383723], [42384736, 42384769]]	[[42381374, 42381453], [42383059, 42383723], [42384736, 42384769]]
ENST00000444740	[[42381374, 42381453], [42383059, 42383245], [42383604, 42383723], [42384736, 42384805], [42384933, 42385047]]	[[42381374, 42381453], [42383059, 42383245], [42383604, 42383723], [42384736, 42384805], [42384933, 42385047]]
NM_021601	[[42381189, 42381453], [42383059, 42383245], [42383604, 42383723], [42384736, 42384805], [42384933, 42385439]]	[[42381374, 42381453], [42383059, 42383245], [42383604, 42383723], [42384736, 42384805], [42384933, 42385047]]
NM_001783	[[42381189, 42381453], [42383059, 42383359], [42383604, 42383723], [42384736, 42384805], [42384933, 42385439]]	[[42381374, 42381453], [42383059, 42383359], [42383604, 42383723], [42384736, 42384805], [42384933, 42385047]]

Promoter

Chrom	Start	End	Description
chr19	42381173	42381198	CAGE_peak_2_at_CD79A_5end
chr19	42381337	42381360	CAGE_peak_1_at_CD79A_5end
chr19	42384711	42384739	CAGE_peak_3_at_CD79A_5end
chr19	42384740	42384753	CAGE_peak_5_at_CD79A_5end
chr19	42384975	42384986	CAGE_peak_4_at_CD79A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I041867	41867766	41880062	2.18	[{'connected_gene': 'CD79A', 'score': 567.72}, {'connected_gene': 'ARHGEF1', 'score': 24.51}, {'connected_gene': 'ZNF526', 'score': 22.27}, {'connected_gene': 'HNRNPUL1', 'score': 18.27}, {'connected_gene': 'CCDC97', 'score': 14.25}, {'connected_gene': 'RABAC1', 'score': 13.3}, {'connected_gene': 'ZNF574', 'score': 10.73}, {'connected_gene': 'POU2F2', 'score': 5.49}, {'connected_gene': 'DEDD2', 'score': 3.47}, {'connected_gene': 'CEACAM4', 'score': 2.44}, {'connected_gene': 'CEACAM21', 'score': 1.72}, {'connected_gene': 'CEACAM3', 'score': 1.54}, {'connected_gene': 'MIR6797', 'score': 0.77}, {'connected_gene': 'RPS19', 'score': 0.39}]
chr19	GH19I042301	42301536	42303848	2.08	[{'connected_gene': 'PAFAH1B3', 'score': 550.77}, {'connected_gene': 'PRR19', 'score': 550.77}, {'connected_gene': 'ZNF526', 'score': 70.81}, {'connected_gene': 'CCDC97', 'score': 36.85}, {'connected_gene': 'ZNF574', 'score': 22.61}, {'connected_gene': 'RPS19', 'score': 18.83}, {'connected_gene': 'ERF', 'score': 10.53}, {'connected_gene': 'MEGF8', 'score': 4.94}, {'connected_gene': 'CD79A', 'score': 4.92}]
chr19	GH19I041951	41951600	41952001	1.15	[{'connected_gene': 'ZNF526', 'score': 12.82}, {'connected_gene': 'HNRNPUL1', 'score': 12.79}, {'connected_gene': 'CD79A', 'score': 12.23}, {'connected_gene': 'RPS19', 'score': 11.98}, {'connected_gene': 'ATP1A3', 'score': 11.26}, {'connected_gene': 'RABAC1', 'score': 9.76}, {'connected_gene': 'LOC100505585', 'score': 0.34}]
chr19	GH19I041937	41937573	41941866	1.4	[{'connected_gene': 'RABAC1', 'score': 31.76}, {'connected_gene': 'CD79A', 'score': 13.6}, {'connected_gene': 'ARHGEF1', 'score': 3.87}, {'connected_gene': 'POU2F2', 'score': 2.99}, {'connected_gene': 'LOC100505585', 'score': 0.39}]
chr19	GH19I041957	41957194	41960075	2.27	[{'connected_gene': 'RABAC1', 'score': 581.59}, {'connected_gene': 'ZNF526', 'score': 76.06}, {'connected_gene': 'HNRNPUL1', 'score': 54.68}, {'connected_gene': 'CCDC97', 'score': 35.89}, {'connected_gene': 'ZNF574', 'score': 32.05}, {'connected_gene': 'RPS19', 'score': 21.65}, {'connected_gene': 'MEGF8', 'score': 14.39}, {'connected_gene': 'CD79A', 'score': 12.22}, {'connected_gene': 'ATP1A3', 'score': 11.29}, {'connected_gene': 'ERF', 'score': 10.34}, {'connected_gene': 'TMEM145', 'score': 9.91}, {'connected_gene': 'LOC100505585', 'score': 0.31}]
chr19	GH19I041545	41545276	41547353	1.24	[{'connected_gene': 'GC19M041536', 'score': 550.77}, {'connected_gene': 'ENSG00000268027', 'score': 550.77}, {'connected_gene': 'DMAC2', 'score': 11.91}, {'connected_gene': 'ERICH4', 'score': 11.91}, {'connected_gene': 'LINC01480', 'score': 7.93}, {'connected_gene': 'ENSG00000268355', 'score': 7.66}, {'connected_gene': 'EXOSC5', 'score': 4.96}, {'connected_gene': 'PCAT19', 'score': 4.9}, {'connected_gene': 'CEACAM21', 'score': 2.75}, {'connected_gene': 'ARHGEF1', 'score': 2.14}, {'connected_gene': 'CD79A', 'score': 1.89}, {'connected_gene': 'B9D2', 'score': 1.86}, {'connected_gene': 'HNRNPUL1', 'score': 1.5}, {'connected_gene': 'CCDC97', 'score': 1.27}]