PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000182527	[[52362199, 52368068], [52369388, 52369552], [52370396, 52370540], [52370829, 52370934], [52372350, 52372421], [52373031, 52373116], [52374325, 52374384], [52380803, 52380920], [52381425, 52381535], [52400580, 52400644], [52441593, 52441713]]	[[52367994, 52368068], [52369388, 52369552], [52370396, 52370540], [52370829, 52370934], [52372350, 52372421], [52373031, 52373116], [52374325, 52374384], [52380803, 52380920], [52381425, 52381535], [52400580, 52400644], [52441593, 52441713]]
NM_012288	[[52362199, 52368068], [52369388, 52369552], [52370396, 52370540], [52370829, 52370934], [52372350, 52372421], [52373031, 52373116], [52374325, 52374384], [52380803, 52380920], [52381425, 52381535], [52400580, 52400644], [52441593, 52441862]]	[[52367994, 52368068], [52369388, 52369552], [52370396, 52370540], [52370829, 52370934], [52372350, 52372421], [52373031, 52373116], [52374325, 52374384], [52380803, 52380920], [52381425, 52381535], [52400580, 52400644], [52441593, 52441713]]

Promoter

Chrom	Start	End	Description
chr6	52441770	52441784	CAGE_peak_2_at_TRAM2_5end
chr6	52441791	52441804	CAGE_peak_3_at_TRAM2_5end
chr6	52441810	52441865	CAGE_peak_1_at_TRAM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I052422	52422908	52425971	1.04	[{'connected_gene': 'TRAM2', 'score': 10.79}, {'connected_gene': 'TRAM2-AS1', 'score': 10.79}, {'connected_gene': 'SLC25A20P1', 'score': 9.02}, {'connected_gene': 'IL17F', 'score': 9.02}, {'connected_gene': 'EFHC1', 'score': 7.57}, {'connected_gene': 'PAQR8', 'score': 5.8}, {'connected_gene': 'PIR61259', 'score': 0.37}, {'connected_gene': 'PIR35463', 'score': 0.31}]
chr6	GH06I052407	52407523	52407672	0.63	[{'connected_gene': 'TRAM2', 'score': 10.3}, {'connected_gene': 'TRAM2-AS1', 'score': 10.3}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PAQR8', 'score': 4.27}, {'connected_gene': 'PIR61259', 'score': 0.77}, {'connected_gene': 'EFHC1', 'score': 0.25}, {'connected_gene': 'PIR35463', 'score': 0.25}]
chr6	GH06I052410	52410552	52411597	0.4	[{'connected_gene': 'TRAM2', 'score': 10.3}, {'connected_gene': 'TRAM2-AS1', 'score': 10.3}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PAQR8', 'score': 4.92}, {'connected_gene': 'PIR61259', 'score': 0.44}, {'connected_gene': 'PIR35463', 'score': 0.26}, {'connected_gene': 'EFHC1', 'score': 0.25}]
chr6	GH06I052609	52609615	52613127	1.2	[{'connected_gene': 'TRAM2', 'score': 11.63}, {'connected_gene': 'TRAM2-AS1', 'score': 11.63}, {'connected_gene': 'EFHC1', 'score': 10.67}, {'connected_gene': 'LOC730101', 'score': 8.62}, {'connected_gene': 'PIR56752', 'score': 0.44}, {'connected_gene': 'LOC724104', 'score': 0.25}]
chr6	GH06I052616	52616274	52617595	0.6	[{'connected_gene': 'TRAM2', 'score': 11.29}, {'connected_gene': 'TRAM2-AS1', 'score': 11.29}, {'connected_gene': 'EFHC1', 'score': 10.56}, {'connected_gene': 'PIR56752', 'score': 0.39}, {'connected_gene': 'LOC724104', 'score': 0.26}]
chr6	GH06I052563	52563993	52578444	2.75	[{'connected_gene': 'TRAM2', 'score': 553.57}, {'connected_gene': 'EFHC1', 'score': 21.25}, {'connected_gene': 'MCM3', 'score': 20.38}, {'connected_gene': 'TRAM2-AS1', 'score': 11.6}, {'connected_gene': 'PAQR8', 'score': 5.78}, {'connected_gene': 'LOC730101', 'score': 4.4}, {'connected_gene': 'GC06P052544', 'score': 0.31}]
chr6	GH06I052564	52563023	52563172	0.58	[{'connected_gene': 'TRAM2', 'score': 0.39}, {'connected_gene': 'GC06P052544', 'score': 0.37}]
chr6	GH06I052325	52325383	52332294	1.34	[{'connected_gene': 'PAQR8', 'score': 12.39}, {'connected_gene': 'MCM3', 'score': 10.84}, {'connected_gene': 'TRAM2', 'score': 5.06}, {'connected_gene': 'LOC730101', 'score': 4.33}, {'connected_gene': 'GC06M052308', 'score': 0.37}]
chr6	GH06I052587	52587812	52591680	1.38	[{'connected_gene': 'LOC730101', 'score': 8.55}, {'connected_gene': 'TRAM2', 'score': 5.25}, {'connected_gene': 'TRAM2-AS1', 'score': 0.39}, {'connected_gene': 'PIR56752', 'score': 0.37}]
chr6	GH06I052663	52663164	52665624	1.53	[{'connected_gene': 'LOC730101', 'score': 573.2}, {'connected_gene': 'MCM3', 'score': 19.25}, {'connected_gene': 'EFHC1', 'score': 12.51}, {'connected_gene': 'TRAM2', 'score': 11.59}, {'connected_gene': 'TRAM2-AS1', 'score': 11.59}, {'connected_gene': 'ICK', 'score': 9.97}, {'connected_gene': 'TMEM14A', 'score': 7.14}, {'connected_gene': 'GC06P052657', 'score': 0.44}]
chr6	GH06I052412	52412408	52414439	0.46	[{'connected_gene': 'MCM3', 'score': 18.28}, {'connected_gene': 'PAQR8', 'score': 16.21}, {'connected_gene': 'TRAM2', 'score': 11.21}, {'connected_gene': 'TRAM2-AS1', 'score': 11.21}, {'connected_gene': 'TMEM14A', 'score': 10.67}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PIR61259', 'score': 0.44}, {'connected_gene': 'PIR35463', 'score': 0.28}, {'connected_gene': 'EFHC1', 'score': 0.23}]
chr6	GH06I052549	52549455	52554424	1.5	[{'connected_gene': 'TRAM2-AS1', 'score': 17.93}, {'connected_gene': 'TRAM2', 'score': 11.67}, {'connected_gene': 'EFHC1', 'score': 10.47}, {'connected_gene': 'PAQR8', 'score': 6.24}, {'connected_gene': 'GSTA5', 'score': 2.9}, {'connected_gene': 'GC06P052544', 'score': 0.44}]
chr6	GH06I052554	52554601	52556800	0.6	[{'connected_gene': 'TRAM2-AS1', 'score': 6.51}, {'connected_gene': 'GC06P052544', 'score': 0.39}, {'connected_gene': 'TRAM2', 'score': 0.34}]
chr6	GH06I052560	52560016	52561264	0.56	[{'connected_gene': 'TRAM2-AS1', 'score': 5.51}, {'connected_gene': 'TRAM2', 'score': 0.37}, {'connected_gene': 'GC06P052544', 'score': 0.37}]
chr6	GH06I052557	52557401	52559601	0.99	[{'connected_gene': 'TRAM2-AS1', 'score': 6.54}, {'connected_gene': 'GC06P052544', 'score': 0.39}, {'connected_gene': 'TRAM2', 'score': 0.37}]
chr6	GH06I052670	52670436	52672203	2.02	[{'connected_gene': 'TMEM14A', 'score': 550.77}, {'connected_gene': 'LOC730101', 'score': 23.25}, {'connected_gene': 'MCM3', 'score': 16.78}, {'connected_gene': 'TRAM2', 'score': 10.26}, {'connected_gene': 'ENSG00000271227', 'score': 0.37}]
chr6	GH06I053054	53054035	53063285	2.27	[{'connected_gene': 'ICK', 'score': 550.77}, {'connected_gene': 'MCM3', 'score': 15.89}, {'connected_gene': 'TRAM2', 'score': 10.66}, {'connected_gene': 'GSTA3', 'score': 9.76}, {'connected_gene': 'FBXO9', 'score': 0.44}]
chr6	GH06I052593	52593476	52599524	1.72	[{'connected_gene': 'EFHC1', 'score': 11.38}, {'connected_gene': 'LOC730101', 'score': 7.52}, {'connected_gene': 'TRAM2', 'score': 5.28}, {'connected_gene': 'PIR56752', 'score': 0.44}, {'connected_gene': 'TRAM2-AS1', 'score': 0.37}]
chr6	GH06I052482	52482486	52483916	1.01	[{'connected_gene': 'EFHC1', 'score': 38.58}, {'connected_gene': 'MCM3', 'score': 8.69}, {'connected_gene': 'TRAM2', 'score': 4.53}, {'connected_gene': 'GC06P052479', 'score': 0.77}, {'connected_gene': 'PIR60379', 'score': 0.39}]
chr6	GH06I052508	52508209	52520570	1.75	[{'connected_gene': 'EFHC1', 'score': 14.29}, {'connected_gene': 'MCM3', 'score': 9.83}, {'connected_gene': 'PAQR8', 'score': 7.27}, {'connected_gene': 'TRAM2', 'score': 6.18}, {'connected_gene': 'TRAM2-AS1', 'score': 5.93}, {'connected_gene': 'GSTA5', 'score': 3.28}, {'connected_gene': 'PIR40531', 'score': 0.44}, {'connected_gene': 'PIR31355', 'score': 0.37}]
chr6	GH06I052415	52415619	52422430	2.32	[{'connected_gene': 'EFHC1', 'score': 579.11}, {'connected_gene': 'MCM3', 'score': 45.21}, {'connected_gene': 'PAQR8', 'score': 5.98}, {'connected_gene': 'TRAM2', 'score': 4.25}, {'connected_gene': 'PIR61259', 'score': 0.39}, {'connected_gene': 'PIR35463', 'score': 0.29}]
chr6	GH06I052652	52652001	52652401	1.11	[{'connected_gene': 'EFHC1', 'score': 11.52}, {'connected_gene': 'TRAM2-AS1', 'score': 10.94}, {'connected_gene': 'TRAM2', 'score': 10.93}, {'connected_gene': 'LOC730101', 'score': 6.21}, {'connected_gene': 'LOC724104', 'score': 0.44}, {'connected_gene': 'PIR56752', 'score': 0.25}]
chr6	GH06I052535	52535735	52549070	1.4	[{'connected_gene': 'EFHC1', 'score': 21.03}, {'connected_gene': 'TRAM2-AS1', 'score': 18.01}, {'connected_gene': 'TRAM2', 'score': 11.82}, {'connected_gene': 'MCM3', 'score': 11.11}, {'connected_gene': 'SLC25A20P1', 'score': 9.6}, {'connected_gene': 'IL17F', 'score': 9.6}, {'connected_gene': 'PAQR8', 'score': 6.37}, {'connected_gene': 'LOC730101', 'score': 5.25}, {'connected_gene': 'GC06P052544', 'score': 0.77}, {'connected_gene': 'PIR31355', 'score': 0.39}]
chr6	GH06I052525	52525865	52527209	0.46	[{'connected_gene': 'EFHC1', 'score': 10.66}, {'connected_gene': 'TRAM2-AS1', 'score': 6.7}, {'connected_gene': 'PAQR8', 'score': 6.42}, {'connected_gene': 'PIR31355', 'score': 0.77}, {'connected_gene': 'PIR40531', 'score': 0.37}, {'connected_gene': 'TRAM2', 'score': 0.23}]
chr6	GH06I052521	52521402	52524275	1.16	[{'connected_gene': 'EFHC1', 'score': 11.18}, {'connected_gene': 'TRAM2-AS1', 'score': 6.67}, {'connected_gene': 'PAQR8', 'score': 5.18}, {'connected_gene': 'PIR31355', 'score': 0.44}, {'connected_gene': 'PIR40531', 'score': 0.39}, {'connected_gene': 'TRAM2', 'score': 0.23}]
chr6	GH06I052509	52508003	52508192	0.95	[{'connected_gene': 'PIR40531', 'score': 550.77}, {'connected_gene': 'PIR31355', 'score': 0.34}, {'connected_gene': 'TRAM2', 'score': 0.2}, {'connected_gene': 'EFHC1', 'score': 0.11}]
chr6	GH06I052502	52502711	52506345	1.44	[{'connected_gene': 'PIR49179', 'score': 550.77}, {'connected_gene': 'PIR39650', 'score': 550.77}, {'connected_gene': 'GC06P052504', 'score': 550.77}, {'connected_gene': 'PIR56640', 'score': 550.77}, {'connected_gene': 'MCM3', 'score': 18.72}, {'connected_gene': 'EFHC1', 'score': 8.26}, {'connected_gene': 'PAQR8', 'score': 5.81}, {'connected_gene': 'PIR40531', 'score': 0.77}, {'connected_gene': 'TRAM2', 'score': 0.19}]
chr6	GH06I052527	52527505	52533946	0.46	[{'connected_gene': 'PIR31355', 'score': 550.77}, {'connected_gene': 'TRAM2-AS1', 'score': 17.81}, {'connected_gene': 'TRAM2', 'score': 11.66}, {'connected_gene': 'EFHC1', 'score': 10.78}, {'connected_gene': 'PAQR8', 'score': 6.59}, {'connected_gene': 'GC06P052544', 'score': 0.39}]
chr6	GH06I052496	52496312	52500750	1.3	[{'connected_gene': 'PIR52747', 'score': 550.77}, {'connected_gene': 'PIR60436', 'score': 550.77}, {'connected_gene': 'PIR60551', 'score': 550.77}, {'connected_gene': 'GC06M052528', 'score': 550.77}, {'connected_gene': 'EFHC1', 'score': 8.18}, {'connected_gene': 'TRAM2-AS1', 'score': 5.6}, {'connected_gene': 'MCM3', 'score': 5.5}, {'connected_gene': 'PAQR8', 'score': 5.47}, {'connected_gene': 'PIR34965', 'score': 0.77}, {'connected_gene': 'PIR60379', 'score': 0.77}, {'connected_gene': 'TRAM2', 'score': 0.18}]