PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000257287	[[56815146, 56815225], [56818251, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56825932], [56830439, 56830568], [56831809, 56832025], [56835228, 56835294], [56837435, 56837574], [56840911, 56841135], [56846308, 56846461], [56847392, 56847545], [56851446, 56851524], [56858099, 56858251], [56865467, 56865583], [56865656, 56865811], [56874492, 56874548], [56875900, 56876069], [56877577, 56877688], [56877965, 56878151], [56883813, 56884023], [56885518, 56885721], [56886841, 56886946], [56890666, 56890780], [56897525, 56899529]]	[[56818296, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56825932], [56830439, 56830568], [56831809, 56832025], [56835228, 56835294], [56837435, 56837574], [56840911, 56841135], [56846308, 56846461], [56847392, 56847545], [56851446, 56851524], [56858099, 56858251], [56865467, 56865583], [56865656, 56865811], [56874492, 56874548], [56875900, 56876069], [56877577, 56877688], [56877965, 56878151], [56883813, 56884023], [56885518, 56885721], [56886841, 56886946], [56890666, 56890769]]
ENST00000506202	[[56831031, 56832025], [56835228, 56835294], [56837435, 56837574], [56840911, 56841135], [56846308, 56846461], [56847392, 56847545], [56851446, 56851524], [56858099, 56858251], [56865467, 56865583], [56865656, 56865811], [56874492, 56874548], [56875900, 56876069], [56877577, 56877688], [56877965, 56878151], [56883813, 56884023], [56885518, 56885721], [56886841, 56886946], [56890666, 56890780], [56897525, 56899270]]	None
ENST00000422247	[[56815036, 56815225], [56818251, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56827091]]	[[56818296, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56825983]]
ENST00000506809	[[56815110, 56815225], [56818251, 56818719]]	None
ENST00000515081	[[56820443, 56820549], [56823388, 56823530], [56825847, 56825932], [56830439, 56830568], [56831809, 56832746]]	None
NM_025009	[[56814973, 56815225], [56818251, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56825932], [56830439, 56830568], [56831809, 56832025], [56835228, 56835294], [56837435, 56837574], [56840911, 56841135], [56846308, 56846461], [56847392, 56847545], [56851446, 56851524], [56858099, 56858251], [56865467, 56865583], [56865656, 56865811], [56874492, 56874548], [56875900, 56876069], [56877577, 56877688], [56877965, 56878151], [56883813, 56884023], [56885518, 56885721], [56886841, 56886946], [56890666, 56890780], [56897525, 56899529]]	[[56818296, 56818409], [56819250, 56819441], [56820381, 56820549], [56823388, 56823530], [56825847, 56825932], [56830439, 56830568], [56831809, 56832025], [56835228, 56835294], [56837435, 56837574], [56840911, 56841135], [56846308, 56846461], [56847392, 56847545], [56851446, 56851524], [56858099, 56858251], [56865467, 56865583], [56865656, 56865811], [56874492, 56874548], [56875900, 56876069], [56877577, 56877688], [56877965, 56878151], [56883813, 56884023], [56885518, 56885721], [56886841, 56886946], [56890666, 56890769]]

Promoter

Chrom	Start	End	Description
chr4	56814968	56815018	CAGE_peak_1_at_CEP135_5end
chr4	56815072	56815097	CAGE_peak_3_at_CEP135_5end
chr4	56815102	56815127	CAGE_peak_2_at_CEP135_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I055946	55946152	55950874	2.27	[{'connected_gene': 'CEP135', 'score': 567.57}, {'connected_gene': 'LOC105377663', 'score': 550.77}, {'connected_gene': 'RN7SKP30', 'score': 11.89}, {'connected_gene': 'EXOC1', 'score': 6.18}, {'connected_gene': 'GC04P055928', 'score': 0.37}]
chr4	GH04I055543	55543989	55548764	2.06	[{'connected_gene': 'CLOCK', 'score': 559.76}, {'connected_gene': 'ENSG00000272969', 'score': 558.14}, {'connected_gene': 'RN7SKP30', 'score': 46.4}, {'connected_gene': 'TMEM165', 'score': 28.16}, {'connected_gene': 'CEP135', 'score': 14.64}, {'connected_gene': 'AASDH', 'score': 13.03}, {'connected_gene': 'SRP72', 'score': 12.42}, {'connected_gene': 'NMU', 'score': 10.55}, {'connected_gene': 'SRD5A3', 'score': 7.48}]
chr4	GH04I056652	56652118	56657466	1.97	[{'connected_gene': 'HOPX', 'score': 576.01}, {'connected_gene': 'LOC101928815', 'score': 550.77}, {'connected_gene': 'AASDH', 'score': 18.21}, {'connected_gene': 'SRP72', 'score': 15.45}, {'connected_gene': 'CEP135', 'score': 13.64}, {'connected_gene': 'POLR2B', 'score': 12.59}, {'connected_gene': 'SPINK2', 'score': 10.9}, {'connected_gene': 'ENSG00000251799', 'score': 10.89}, {'connected_gene': 'ENSG00000280285', 'score': 0.39}]
chr4	GH04I056906	56906678	56911262	1.99	[{'connected_gene': 'REST', 'score': 550.77}, {'connected_gene': 'NOA1', 'score': 24.01}, {'connected_gene': 'POLR2B', 'score': 23.59}, {'connected_gene': 'AASDH', 'score': 18.18}, {'connected_gene': 'SRP72', 'score': 15.4}, {'connected_gene': 'CEP135', 'score': 13.63}, {'connected_gene': 'ENSG00000269949', 'score': 11.71}, {'connected_gene': 'SPINK2', 'score': 10.65}, {'connected_gene': 'ENSG00000251799', 'score': 10.64}, {'connected_gene': 'RNU6-998P', 'score': 9.76}, {'connected_gene': 'GC04P056945', 'score': 0.28}]
chr4	GH04I055394	55394962	55399618	2.27	[{'connected_gene': 'TMEM165', 'score': 567.86}, {'connected_gene': 'GC04P055398', 'score': 550.77}, {'connected_gene': 'SRD5A3-AS1', 'score': 550.77}, {'connected_gene': 'CEP135', 'score': 20.49}, {'connected_gene': 'RN7SKP30', 'score': 16.57}, {'connected_gene': 'CLOCK', 'score': 15.14}, {'connected_gene': 'AASDH', 'score': 12.28}, {'connected_gene': 'SRD5A3', 'score': 11.84}, {'connected_gene': 'NMU', 'score': 9.93}, {'connected_gene': 'ENSG00000272969', 'score': 7.53}]
chr4	GH04I056385	56385965	56390223	2.31	[{'connected_gene': 'AASDH', 'score': 580.6}, {'connected_gene': 'GC04P056388', 'score': 550.77}, {'connected_gene': 'ENSG00000269921', 'score': 550.77}, {'connected_gene': 'SRP72', 'score': 44.41}, {'connected_gene': 'CEP135', 'score': 12.6}, {'connected_gene': 'ENSG00000251799', 'score': 8.95}, {'connected_gene': 'SPINK2', 'score': 8.95}]
chr4	GH04I056700	56700708	56701844	0.75	[{'connected_gene': 'AASDH', 'score': 16.5}, {'connected_gene': 'SRP72', 'score': 15.43}, {'connected_gene': 'CEP135', 'score': 11.61}, {'connected_gene': 'POLR2B', 'score': 10.48}, {'connected_gene': 'HOPX', 'score': 6.74}, {'connected_gene': 'LOC105377667', 'score': 0.77}, {'connected_gene': 'LOC105377666', 'score': 0.37}]
chr4	GH04I055635	55635801	55637000	1.57	[{'connected_gene': 'NMU', 'score': 550.77}, {'connected_gene': 'SRP72', 'score': 14.75}, {'connected_gene': 'CEP135', 'score': 12.53}, {'connected_gene': 'SRD5A3', 'score': 9.04}, {'connected_gene': 'PDCL2', 'score': 0.26}]
chr4	GH04I056433	56433450	56438274	2.1	[{'connected_gene': 'PAICS', 'score': 550.77}, {'connected_gene': 'GC04P056437', 'score': 550.77}, {'connected_gene': 'GC04P056436', 'score': 550.77}, {'connected_gene': 'PPAT', 'score': 550.77}, {'connected_gene': 'SRP72', 'score': 50.26}, {'connected_gene': 'CEP135', 'score': 35.93}, {'connected_gene': 'AASDH', 'score': 33.8}, {'connected_gene': 'POLR2B', 'score': 32.68}, {'connected_gene': 'RN7SKP30', 'score': 31.62}, {'connected_gene': 'ENSG00000269921', 'score': 14.66}, {'connected_gene': 'ARL9', 'score': 7.67}]
chr4	GH04I055929	55929108	55929442	0.28	[{'connected_gene': 'GC04P055928', 'score': 550.77}, {'connected_gene': 'CEP135', 'score': 5.45}, {'connected_gene': 'EXOC1', 'score': 1.56}, {'connected_gene': 'LOC105377663', 'score': 0.37}]
chr4	GH04I056026	56026715	56026864	0.43	[{'connected_gene': 'GC04P056007', 'score': 0.37}, {'connected_gene': 'KIAA1211', 'score': 0.34}, {'connected_gene': 'CEP135', 'score': 0.18}]