PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000587885	[[13261228, 13261366], [13263910, 13265063]]	[[13264000, 13264672]]
ENST00000292433	[[13261246, 13261366], [13263757, 13265722]]	[[13264000, 13264672]]
ENST00000588173	[[13262788, 13265722]]	[[13264000, 13264672]]
NM_004907	[[13261281, 13261366], [13263757, 13265722]]	[[13264000, 13264672]]

Promoter

Chrom	Start	End	Description
chr19	13261216	13261320	CAGE_peak_1_at_IER2_5end
chr19	13261328	13261359	CAGE_peak_2_at_IER2_5end
chr19	13264446	13264492	CAGE_peak_3_at_IER2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I013148	13148606	13158783	2.9	[{'connected_gene': 'STX10', 'score': 559.97}, {'connected_gene': 'IER2', 'score': 550.77}, {'connected_gene': 'ENSG00000267598', 'score': 550.77}, {'connected_gene': 'CCDC130', 'score': 84.1}, {'connected_gene': 'ZNF136', 'score': 78.31}, {'connected_gene': 'ZNF44', 'score': 63.56}, {'connected_gene': 'TRMT1', 'score': 62.77}, {'connected_gene': 'ZNF709', 'score': 62.28}, {'connected_gene': 'ZNF564', 'score': 61.78}, {'connected_gene': 'ZNF791', 'score': 55.5}, {'connected_gene': 'WDR83OS', 'score': 52.02}, {'connected_gene': 'TRIR', 'score': 51.9}, {'connected_gene': 'DCAF15', 'score': 48.04}, {'connected_gene': 'RFX1', 'score': 38.27}, {'connected_gene': 'ZNF442', 'score': 37.74}, {'connected_gene': 'ZNF799', 'score': 36.36}, {'connected_gene': 'WDR83', 'score': 29.16}, {'connected_gene': 'TNPO2', 'score': 28.48}, {'connected_gene': 'MRI1', 'score': 28.05}, {'connected_gene': 'RPS6P25', 'score': 27.7}, {'connected_gene': 'ZNF625', 'score': 27.61}, {'connected_gene': 'DHPS', 'score': 24.05}, {'connected_gene': 'ZNF563', 'score': 22.86}, {'connected_gene': 'ENSG00000268945', 'score': 21.0}, {'connected_gene': 'MAN2B1', 'score': 20.43}, {'connected_gene': 'LOC105372278', 'score': 18.59}, {'connected_gene': 'RNASEH2A', 'score': 18.13}, {'connected_gene': 'ZNF490', 'score': 12.35}, {'connected_gene': 'FBXW9', 'score': 11.63}, {'connected_gene': 'RPL28P5', 'score': 10.46}, {'connected_gene': 'ENSG00000248406', 'score': 10.3}, {'connected_gene': 'LOC100289333', 'score': 10.19}, {'connected_gene': 'SYCE2', 'score': 9.74}, {'connected_gene': 'JUNB', 'score': 9.73}, {'connected_gene': 'LYL1', 'score': 1.87}, {'connected_gene': 'DNASE2', 'score': 1.17}, {'connected_gene': 'GC19M013150', 'score': 0.77}, {'connected_gene': 'RPL12P42', 'score': 0.44}]
chr19	GH19I013176	13176133	13177483	0.49	[{'connected_gene': 'STX10', 'score': 12.62}, {'connected_gene': 'IER2', 'score': 12.62}, {'connected_gene': 'LOC100507373', 'score': 5.62}, {'connected_gene': 'RPL12P42', 'score': 0.37}, {'connected_gene': 'GC19P013200', 'score': 0.34}]
chr19	GH19I013180	13180769	13181424	0.2	[{'connected_gene': 'STX10', 'score': 12.62}, {'connected_gene': 'IER2', 'score': 12.6}, {'connected_gene': 'GC19P013200', 'score': 0.37}, {'connected_gene': 'RPL12P42', 'score': 0.34}]
chr19	GH19I013181	13181543	13182576	1.15	[{'connected_gene': 'STX10', 'score': 12.6}, {'connected_gene': 'IER2', 'score': 12.6}, {'connected_gene': 'GC19P013200', 'score': 0.37}, {'connected_gene': 'RPL12P42', 'score': 0.34}]
chr19	GH19I013146	13146732	13147516	0.98	[{'connected_gene': 'STX10', 'score': 0.77}, {'connected_gene': 'IER2', 'score': 0.77}, {'connected_gene': 'ENSG00000267512', 'score': 0.44}]
chr19	GH19I013142	13142640	13144411	1.15	[{'connected_gene': 'STX10', 'score': 6.46}, {'connected_gene': 'ENSG00000267512', 'score': 0.77}, {'connected_gene': 'IER2', 'score': 0.44}]
chr19	GH19I013030	13030322	13038529	1.66	[{'connected_gene': 'TRMT1', 'score': 41.48}, {'connected_gene': 'ZNF844', 'score': 36.77}, {'connected_gene': 'ZNF791', 'score': 36.65}, {'connected_gene': 'ZNF442', 'score': 34.85}, {'connected_gene': 'ZNF136', 'score': 34.51}, {'connected_gene': 'ZNF625', 'score': 23.24}, {'connected_gene': 'MRI1', 'score': 22.85}, {'connected_gene': 'RPS6P25', 'score': 22.43}, {'connected_gene': 'STX10', 'score': 17.13}, {'connected_gene': 'ZNF433', 'score': 13.91}, {'connected_gene': 'NFIX', 'score': 13.09}, {'connected_gene': 'DAND5', 'score': 13.02}, {'connected_gene': 'GADD45GIP1', 'score': 13.0}, {'connected_gene': 'CCDC130', 'score': 12.45}, {'connected_gene': 'ZNF564', 'score': 12.03}, {'connected_gene': 'LYL1', 'score': 12.0}, {'connected_gene': 'NACC1', 'score': 11.97}, {'connected_gene': 'IER2', 'score': 11.44}, {'connected_gene': 'ZNF44', 'score': 10.39}, {'connected_gene': 'ZNF563', 'score': 9.86}, {'connected_gene': 'ENSG00000242615', 'score': 9.73}, {'connected_gene': 'GCDH', 'score': 6.13}, {'connected_gene': 'TNPO2', 'score': 3.91}, {'connected_gene': 'FBXW9', 'score': 2.14}, {'connected_gene': 'WDR83', 'score': 1.96}, {'connected_gene': 'PIR45233', 'score': 0.39}, {'connected_gene': 'ENSG00000267610', 'score': 0.28}]
chr19	GH19I013042	13042471	13045474	1.18	[{'connected_gene': 'TRMT1', 'score': 22.22}, {'connected_gene': 'ZNF20', 'score': 21.95}, {'connected_gene': 'ZNF490', 'score': 16.0}, {'connected_gene': 'LYL1', 'score': 12.4}, {'connected_gene': 'NACC1', 'score': 12.37}, {'connected_gene': 'RNASEH2A', 'score': 12.05}, {'connected_gene': 'NFIX', 'score': 12.01}, {'connected_gene': 'DAND5', 'score': 11.95}, {'connected_gene': 'GADD45GIP1', 'score': 11.93}, {'connected_gene': 'DCAF15', 'score': 11.88}, {'connected_gene': 'ZNF44', 'score': 11.4}, {'connected_gene': 'STX10', 'score': 11.21}, {'connected_gene': 'IER2', 'score': 11.21}, {'connected_gene': 'SYCE2', 'score': 11.04}, {'connected_gene': 'CCDC130', 'score': 11.04}, {'connected_gene': 'RPL28P5', 'score': 10.69}, {'connected_gene': 'ZNF136', 'score': 10.59}, {'connected_gene': 'FBXW9', 'score': 10.47}, {'connected_gene': 'ZNF799', 'score': 9.99}, {'connected_gene': 'RFX1', 'score': 9.72}, {'connected_gene': 'JUNB', 'score': 3.62}, {'connected_gene': 'ZNF791', 'score': 3.23}, {'connected_gene': 'WDR83', 'score': 1.68}, {'connected_gene': 'ZNF564', 'score': 1.26}, {'connected_gene': 'PIR45233', 'score': 0.34}, {'connected_gene': 'ENSG00000267610', 'score': 0.31}]
chr19	GH19I013039	13039221	13041494	0.43	[{'connected_gene': 'LYL1', 'score': 12.36}, {'connected_gene': 'NFIX', 'score': 12.35}, {'connected_gene': 'NACC1', 'score': 12.33}, {'connected_gene': 'TRMT1', 'score': 12.33}, {'connected_gene': 'DAND5', 'score': 12.27}, {'connected_gene': 'GADD45GIP1', 'score': 12.26}, {'connected_gene': 'STX10', 'score': 11.44}, {'connected_gene': 'IER2', 'score': 11.44}, {'connected_gene': 'SYCE2', 'score': 10.65}, {'connected_gene': 'GCDH', 'score': 6.29}, {'connected_gene': 'PIR45233', 'score': 0.37}, {'connected_gene': 'ENSG00000267610', 'score': 0.29}]
chr19	GH19I013038	13038824	13039138	0.31	[{'connected_gene': 'LYL1', 'score': 11.84}, {'connected_gene': 'NACC1', 'score': 11.81}, {'connected_gene': 'TRMT1', 'score': 11.81}, {'connected_gene': 'STX10', 'score': 11.44}, {'connected_gene': 'IER2', 'score': 11.44}, {'connected_gene': 'CALR', 'score': 4.44}, {'connected_gene': 'PIR45233', 'score': 0.37}, {'connected_gene': 'ENSG00000267610', 'score': 0.29}, {'connected_gene': 'NFIX', 'score': 0.26}]
chr19	GH19I013067	13067547	13067696	0.51	[{'connected_gene': 'LYL1', 'score': 12.31}, {'connected_gene': 'NACC1', 'score': 12.28}, {'connected_gene': 'TRMT1', 'score': 12.28}, {'connected_gene': 'STX10', 'score': 11.15}, {'connected_gene': 'IER2', 'score': 11.15}, {'connected_gene': 'ENSG00000267610', 'score': 0.77}, {'connected_gene': 'PIR45233', 'score': 0.26}, {'connected_gene': 'NFIX', 'score': 0.19}]
chr19	GH19I013065	13065577	13067398	0.38	[{'connected_gene': 'LYL1', 'score': 12.34}, {'connected_gene': 'NACC1', 'score': 12.29}, {'connected_gene': 'TRMT1', 'score': 12.29}, {'connected_gene': 'STX10', 'score': 11.15}, {'connected_gene': 'IER2', 'score': 11.15}, {'connected_gene': 'ENSG00000267610', 'score': 0.77}, {'connected_gene': 'PIR45233', 'score': 0.26}, {'connected_gene': 'NFIX', 'score': 0.19}]
chr19	GH19I013045	13045489	13048689	0.31	[{'connected_gene': 'LYL1', 'score': 12.74}, {'connected_gene': 'NACC1', 'score': 12.72}, {'connected_gene': 'TRMT1', 'score': 12.71}, {'connected_gene': 'STX10', 'score': 11.22}, {'connected_gene': 'IER2', 'score': 11.22}, {'connected_gene': 'PIR45233', 'score': 0.34}, {'connected_gene': 'ENSG00000267610', 'score': 0.34}, {'connected_gene': 'NFIX', 'score': 0.23}]
chr19	GH19I013247	13247427	13248201	0.85	[{'connected_gene': 'GC19P013250', 'score': 550.77}, {'connected_gene': 'GC19P013252', 'score': 550.77}, {'connected_gene': 'GC19P013251', 'score': 550.77}, {'connected_gene': 'STX10', 'score': 11.9}, {'connected_gene': 'IER2', 'score': 11.9}, {'connected_gene': 'CACNA1A', 'score': 5.46}, {'connected_gene': 'GC19M013244', 'score': 0.77}]
chr19	GH19I013071	13071673	13072450	0.4	[{'connected_gene': 'ENSG00000267610', 'score': 550.77}, {'connected_gene': 'STX10', 'score': 11.3}, {'connected_gene': 'IER2', 'score': 11.3}, {'connected_gene': 'ENSG00000279044', 'score': 0.44}, {'connected_gene': 'NFIX', 'score': 0.18}]
chr19	GH19I013068	13068167	13071508	1.17	[{'connected_gene': 'ENSG00000267610', 'score': 550.77}, {'connected_gene': 'LYL1', 'score': 13.29}, {'connected_gene': 'NACC1', 'score': 13.24}, {'connected_gene': 'TRMT1', 'score': 13.24}, {'connected_gene': 'STX10', 'score': 11.29}, {'connected_gene': 'IER2', 'score': 11.29}, {'connected_gene': 'RNASEH2A', 'score': 10.64}, {'connected_gene': 'PIR45233', 'score': 0.25}, {'connected_gene': 'NFIX', 'score': 0.19}]