PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377403	[[9294833, 9295125], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9331396]]	[[9304993, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9324928]]
ENST00000602477	[[9299902, 9300077], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9327957]]	[[9300054, 9300077], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9324928]]
ENST00000495451	[[9325588, 9328096], [9331203, 9331396]]	None
NM_004285	[[9294862, 9295125], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9331396]]	[[9304993, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9324928]]
NM_001282587	[[9299902, 9300077], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9331396]]	[[9300054, 9300077], [9304983, 9305620], [9307024, 9307142], [9322117, 9322387], [9323567, 9324928]]

Promoter

Chrom	Start	End	Description
chr1	9294807	9294818	CAGE_peak_3_at_H6PD_5end
chr1	9294822	9294889	CAGE_peak_1_at_H6PD_5end
chr1	9294967	9294991	CAGE_peak_4_at_H6PD_5end
chr1	9299767	9299791	CAGE_peak_9_at_H6PD_5end
chr1	9299811	9299818	CAGE_peak_15_at_H6PD_5end
chr1	9299865	9299874	CAGE_peak_10_at_H6PD_5end
chr1	9299895	9299913	CAGE_peak_2_at_H6PD_5end
chr1	9299914	9299919	CAGE_peak_13_at_H6PD_5end
chr1	9299927	9299954	CAGE_peak_6_at_H6PD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I009232	9232812	9236150	2.51	[{'connected_gene': 'H6PD', 'score': 569.94}, {'connected_gene': 'GC01M009234', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 11.32}, {'connected_gene': 'SLC2A5', 'score': 7.34}, {'connected_gene': 'GC01P009203', 'score': 0.29}]
chr1	GH01I009237	9237717	9245937	2.09	[{'connected_gene': 'H6PD', 'score': 567.73}, {'connected_gene': 'GPR157', 'score': 11.44}, {'connected_gene': 'MIR34A', 'score': 11.11}, {'connected_gene': 'PIR53045', 'score': 0.34}]
chr1	GH01I009210	9210570	9212155	1.07	[{'connected_gene': 'H6PD', 'score': 16.87}, {'connected_gene': 'MIR34A', 'score': 11.65}, {'connected_gene': 'GPR157', 'score': 11.33}, {'connected_gene': 'LINC01759', 'score': 5.19}, {'connected_gene': 'GC01P009203', 'score': 0.44}, {'connected_gene': 'GC01M009234', 'score': 0.34}]
chr1	GH01I009207	9207100	9208252	0.85	[{'connected_gene': 'H6PD', 'score': 12.18}, {'connected_gene': 'MIR34A', 'score': 11.65}, {'connected_gene': 'GPR157', 'score': 11.34}, {'connected_gene': 'LINC01759', 'score': 5.19}, {'connected_gene': 'GC01P009203', 'score': 0.77}, {'connected_gene': 'GC01M009234', 'score': 0.31}]
chr1	GH01I009231	9231202	9232470	1.27	[{'connected_gene': 'H6PD', 'score': 18.27}, {'connected_gene': 'MIR34A', 'score': 11.45}, {'connected_gene': 'GPR157', 'score': 11.33}, {'connected_gene': 'GC01M009234', 'score': 0.77}, {'connected_gene': 'GC01P009203', 'score': 0.31}]
chr1	GH01I009257	9257073	9261027	0.66	[{'connected_gene': 'H6PD', 'score': 13.99}, {'connected_gene': 'MIR34A', 'score': 11.24}, {'connected_gene': 'GPR157', 'score': 11.0}, {'connected_gene': 'PIR53045', 'score': 0.44}]
chr1	GH01I009246	9246887	9252151	1.26	[{'connected_gene': 'H6PD', 'score': 18.48}, {'connected_gene': 'PIR53045', 'score': 0.37}]
chr1	GH01I009236	9236737	9237218	0.31	[{'connected_gene': 'H6PD', 'score': 0.77}, {'connected_gene': 'PIR53045', 'score': 0.31}]
chr1	GH01I009274	9274996	9276331	1.54	[{'connected_gene': 'SPSB1', 'score': 9.25}, {'connected_gene': 'H6PD', 'score': 6.64}, {'connected_gene': 'SLC25A33', 'score': 1.23}, {'connected_gene': 'PIR55180', 'score': 0.44}]
chr1	GH01I009278	9278402	9282232	1.2	[{'connected_gene': 'SPSB1', 'score': 6.92}, {'connected_gene': 'SLC2A5', 'score': 5.68}, {'connected_gene': 'H6PD', 'score': 5.27}, {'connected_gene': 'PIK3CD', 'score': 5.01}, {'connected_gene': 'PIR55180', 'score': 0.39}]
chr1	GH01I009153	9153596	9154970	0.31	[{'connected_gene': 'GPR157', 'score': 12.17}, {'connected_gene': 'H6PD', 'score': 10.96}, {'connected_gene': 'SLC2A5', 'score': 9.53}, {'connected_gene': 'MIR34A', 'score': 0.77}, {'connected_gene': 'GC01P009164', 'score': 0.44}, {'connected_gene': 'MIR34AHG', 'score': 0.26}]
chr1	GH01I009268	9268662	9270855	0.6	[{'connected_gene': 'GPR157', 'score': 10.9}, {'connected_gene': 'SPSB1', 'score': 6.88}, {'connected_gene': 'H6PD', 'score': 4.54}, {'connected_gene': 'PIR55180', 'score': 0.77}]
chr1	GH01I009225	9225061	9226126	0.43	[{'connected_gene': 'GPR157', 'score': 11.61}, {'connected_gene': 'MIR34A', 'score': 11.34}, {'connected_gene': 'H6PD', 'score': 8.12}, {'connected_gene': 'LINC01759', 'score': 4.62}, {'connected_gene': 'GC01M009234', 'score': 0.44}, {'connected_gene': 'GC01P009203', 'score': 0.34}]
chr1	GH01I009252	9252730	9254017	1.03	[{'connected_gene': 'MIR34A', 'score': 10.8}, {'connected_gene': 'PIR53045', 'score': 0.39}, {'connected_gene': 'H6PD', 'score': 0.37}]
chr1	GH01I009255	9255560	9256947	0.2	[{'connected_gene': 'MIR34A', 'score': 11.25}, {'connected_gene': 'GPR157', 'score': 11.0}, {'connected_gene': 'PIR53045', 'score': 0.44}, {'connected_gene': 'H6PD', 'score': 0.34}]
chr1	GH01I008869	8869872	8881708	2.65	[{'connected_gene': 'ENO1', 'score': 571.67}, {'connected_gene': 'LOC102724552', 'score': 36.56}, {'connected_gene': 'MIR34AHG', 'score': 19.43}, {'connected_gene': 'RERE', 'score': 14.91}, {'connected_gene': 'GPR157', 'score': 14.47}, {'connected_gene': 'CLSTN1', 'score': 12.12}, {'connected_gene': 'PIK3CD-AS2', 'score': 11.57}, {'connected_gene': 'SLC45A1', 'score': 9.89}, {'connected_gene': 'H6PD', 'score': 4.57}, {'connected_gene': 'ENO1-AS1', 'score': 0.77}, {'connected_gene': 'ENO1-IT1', 'score': 0.77}, {'connected_gene': 'MIR6728', 'score': 0.44}]
chr1	GH01I009262	9262792	9264965	0.38	[{'connected_gene': 'PIR53045', 'score': 550.77}, {'connected_gene': 'SPSB1', 'score': 12.54}, {'connected_gene': 'H6PD', 'score': 0.31}]
chr1	GH01I009266	9266843	9267402	1.06	[{'connected_gene': 'PIR55180', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 10.91}, {'connected_gene': 'H6PD', 'score': 7.07}, {'connected_gene': 'SPSB1', 'score': 0.31}]
chr1	GH01I009267	9266164	9266366	0.31	[{'connected_gene': 'PIR53045', 'score': 550.77}, {'connected_gene': 'PIR55180', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 10.91}, {'connected_gene': 'H6PD', 'score': 0.29}]
chr1	GH01I009200	9200300	9202805	1.15	[{'connected_gene': 'GC01P009203', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 11.26}, {'connected_gene': 'LZIC', 'score': 9.68}, {'connected_gene': 'H6PD', 'score': 4.72}, {'connected_gene': 'ENSG00000281937', 'score': 0.77}]
chr1	GH01I009162	9162041	9167156	1.72	[{'connected_gene': 'GC01M009163', 'score': 550.77}, {'connected_gene': 'GC01P009164', 'score': 550.77}, {'connected_gene': 'GPR157', 'score': 12.03}, {'connected_gene': 'SLC45A1', 'score': 11.34}, {'connected_gene': 'H6PD', 'score': 5.03}, {'connected_gene': 'LINC01759', 'score': 4.85}, {'connected_gene': 'SLC2A5', 'score': 4.48}, {'connected_gene': 'SPSB1', 'score': 1.99}, {'connected_gene': 'GC01M009171', 'score': 0.44}, {'connected_gene': 'MIR34AHG', 'score': 0.29}]