PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371347	[[46620677, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46645930]]	[[46620929, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46644191]]
ENST00000411689	[[46620678, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46644383, 46644750]]	[[46620929, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46644383, 46644417]]
ENST00000452689	[[46620721, 46621035], [46623579, 46623767], [46626161, 46626265], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46644513]]	[[46626225, 46626265], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46644191]]
ENST00000603486	[[46626399, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636484]]	[[46626610, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636484]]
ENST00000604908	[[46626489, 46626783], [46630112, 46630235], [46636445, 46636530], [46637871, 46637945]]	None
ENST00000604217	[[46630196, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965]]	[[46630196, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965]]
ENST00000604127	[[46630196, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46644480], [46645347, 46645654]]	[[46630196, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46644386]]
ENST00000604616	[[46632611, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46644740]]	[[46632611, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46644386]]
ENST00000603501	[[46644249, 46644480], [46645347, 46645471]]	None
NM_001204052	[[46620651, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46644383, 46645927]]	[[46620929, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46644383, 46644417]]
NM_001204051	[[46620651, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46645927]]	[[46620929, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644383, 46644386]]
NM_004277	[[46620651, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46645927]]	[[46620929, 46621035], [46623579, 46623771], [46626698, 46626783], [46630112, 46630235], [46632510, 46632623], [46636445, 46636530], [46637871, 46637964], [46638862, 46638965], [46644119, 46644191]]

Promoter

Chrom	Start	End	Description
chr6	46620651	46620660	CAGE_peak_4_at_SLC25A27_5end
chr6	46620676	46620696	CAGE_peak_3_at_SLC25A27_5end
chr6	46620705	46620732	CAGE_peak_1_at_SLC25A27_5end
chr6	46620738	46620755	CAGE_peak_2_at_SLC25A27_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I046893	46893153	46894957	0.72	[{'connected_gene': 'SLC25A27', 'score': 18.52}, {'connected_gene': 'PLA2G7', 'score': 10.09}, {'connected_gene': 'TDRD6', 'score': 9.81}, {'connected_gene': 'LOC101926962', 'score': 0.44}, {'connected_gene': 'GC06P046865', 'score': 0.31}, {'connected_gene': 'ADGRF5', 'score': 0.21}]
chr6	GH06I046651	46651209	46653853	1.96	[{'connected_gene': 'SLC25A27', 'score': 579.04}, {'connected_gene': 'CYP39A1', 'score': 550.77}, {'connected_gene': 'TDRD6', 'score': 34.43}, {'connected_gene': 'PLA2G7', 'score': 10.34}, {'connected_gene': 'RCAN2', 'score': 0.1}]
chr6	GH06I046465	46465987	46467501	0.38	[{'connected_gene': 'SLC25A27', 'score': 19.06}, {'connected_gene': 'CYP39A1', 'score': 13.17}, {'connected_gene': 'LOC101926898', 'score': 12.03}, {'connected_gene': 'RCAN2', 'score': 12.03}, {'connected_gene': 'PLA2G7', 'score': 9.66}, {'connected_gene': 'TDRD6', 'score': 4.47}, {'connected_gene': 'RPL36P10', 'score': 0.31}]
chr6	GH06I046291	46291432	46291655	0.42	[{'connected_gene': 'SLC25A27', 'score': 3.03}, {'connected_gene': 'ENPP4', 'score': 2.28}, {'connected_gene': 'LOC101926915', 'score': 0.37}, {'connected_gene': 'RPL36P10', 'score': 0.11}, {'connected_gene': 'RCAN2', 'score': 0.08}]
chr6	GH06I047167	47167234	47171274	1.36	[{'connected_gene': 'SLC25A27', 'score': 11.99}, {'connected_gene': 'TDRD6', 'score': 11.53}, {'connected_gene': 'PTCHD4', 'score': 11.0}, {'connected_gene': 'LOC105375081', 'score': 0.29}, {'connected_gene': 'TNFRSF21', 'score': 0.11}]
chr6	GH06I046982	46982678	46984508	0.94	[{'connected_gene': 'SLC25A27', 'score': 12.02}, {'connected_gene': 'TDRD6', 'score': 11.54}, {'connected_gene': 'ADGRF5', 'score': 11.45}, {'connected_gene': 'PLA2G7', 'score': 10.74}, {'connected_gene': 'ADGRF1', 'score': 0.22}]
chr6	GH06I046502	46502212	46503281	0.38	[{'connected_gene': 'SLC25A27', 'score': 7.18}, {'connected_gene': 'TDRD6', 'score': 6.2}, {'connected_gene': 'LOC101926898', 'score': 0.39}, {'connected_gene': 'RCAN2', 'score': 0.39}, {'connected_gene': 'CYP39A1', 'score': 0.1}]
chr6	GH06I046848	46848351	46849624	1.14	[{'connected_gene': 'SLC25A27', 'score': 18.04}, {'connected_gene': 'TDRD6', 'score': 11.58}, {'connected_gene': 'GC06M046858', 'score': 0.39}, {'connected_gene': 'GC06M046859', 'score': 0.39}, {'connected_gene': 'GC06P046830', 'score': 0.37}]
chr6	GH06I047125	47125749	47128051	1.01	[{'connected_gene': 'SLC25A27', 'score': 11.24}, {'connected_gene': 'LOC105375081', 'score': 0.39}, {'connected_gene': 'ADGRF1', 'score': 0.18}]
chr6	GH06I046504	46504571	46506933	0.2	[{'connected_gene': 'SLC25A27', 'score': 6.86}, {'connected_gene': 'RCAN2', 'score': 6.12}, {'connected_gene': 'LOC101926898', 'score': 0.39}, {'connected_gene': 'CYP39A1', 'score': 0.11}]
chr6	GH06I046530	46530155	46531081	0.2	[{'connected_gene': 'SLC25A27', 'score': 5.03}, {'connected_gene': 'LOC101926898', 'score': 0.28}, {'connected_gene': 'RCAN2', 'score': 0.28}, {'connected_gene': 'CYP39A1', 'score': 0.13}]
chr6	GH06I046203	46203053	46204027	0.2	[{'connected_gene': 'ACTG1P9', 'score': 550.77}, {'connected_gene': 'ENPP5', 'score': 11.19}, {'connected_gene': 'SLC25A27', 'score': 4.94}]
chr6	GH06I046734	46733980	46735826	1.86	[{'connected_gene': 'PLA2G7', 'score': 550.77}, {'connected_gene': 'SLC25A27', 'score': 64.67}, {'connected_gene': 'TDRD6', 'score': 32.17}, {'connected_gene': 'CYP39A1', 'score': 20.99}, {'connected_gene': 'CD2AP', 'score': 17.99}, {'connected_gene': 'GC06P046731', 'score': 0.77}]
chr6	GH06I046500	46500408	46501013	0.38	[{'connected_gene': 'PLA2G7', 'score': 9.61}, {'connected_gene': 'SLC25A27', 'score': 4.92}, {'connected_gene': 'LOC101926898', 'score': 0.44}, {'connected_gene': 'RCAN2', 'score': 0.44}, {'connected_gene': 'CYP39A1', 'score': 0.1}]
chr6	GH06I046501	46501097	46502140	0.38	[{'connected_gene': 'PLA2G7', 'score': 9.61}, {'connected_gene': 'SLC25A27', 'score': 7.27}, {'connected_gene': 'LOC101926898', 'score': 0.44}, {'connected_gene': 'RCAN2', 'score': 0.44}, {'connected_gene': 'CYP39A1', 'score': 0.1}]
chr6	GH06I046820	46820978	46823070	0.71	[{'connected_gene': 'PLA2G7', 'score': 10.47}, {'connected_gene': 'TDRD6', 'score': 10.15}, {'connected_gene': 'SLC25A27', 'score': 4.52}, {'connected_gene': 'GC06P046830', 'score': 0.44}, {'connected_gene': 'MEP1A', 'score': 0.31}]
chr6	GH06I046807	46807721	46809360	0.43	[{'connected_gene': 'PLA2G7', 'score': 10.61}, {'connected_gene': 'TDRD6', 'score': 9.87}, {'connected_gene': 'ADGRF5', 'score': 9.47}, {'connected_gene': 'SLC25A27', 'score': 6.62}, {'connected_gene': 'MEP1A', 'score': 4.77}, {'connected_gene': 'GC06P046792', 'score': 0.37}, {'connected_gene': 'GC06P046830', 'score': 0.34}]
chr6	GH06I046814	46814752	46817543	0.45	[{'connected_gene': 'PLA2G7', 'score': 10.56}, {'connected_gene': 'LOC101926962', 'score': 9.95}, {'connected_gene': 'SLC25A27', 'score': 7.18}, {'connected_gene': 'MEP1A', 'score': 6.46}, {'connected_gene': 'ADGRF4', 'score': 4.12}, {'connected_gene': 'GC06P046830', 'score': 0.39}]
chr6	GH06I047307	47307632	47310574	2.06	[{'connected_gene': 'TNFRSF21', 'score': 550.77}, {'connected_gene': 'SLC25A27', 'score': 11.99}, {'connected_gene': 'TDRD6', 'score': 11.51}, {'connected_gene': 'LOC105375081', 'score': 0.09}]
chr6	GH06I046507	46507282	46509600	0.46	[{'connected_gene': 'TDRD6', 'score': 7.48}, {'connected_gene': 'SLC25A27', 'score': 7.1}, {'connected_gene': 'LOC101926898', 'score': 0.37}, {'connected_gene': 'RCAN2', 'score': 0.37}, {'connected_gene': 'CYP39A1', 'score': 0.11}]
chr6	GH06I046787	46787835	46791736	0.6	[{'connected_gene': 'TDRD6', 'score': 14.64}, {'connected_gene': 'PLA2G7', 'score': 10.4}, {'connected_gene': 'SLC25A27', 'score': 5.9}, {'connected_gene': 'GC06P046792', 'score': 0.77}, {'connected_gene': 'ENSG00000236164', 'score': 0.31}]
chr6	GH06I046486	46486712	46488520	0.2	[{'connected_gene': 'TDRD6', 'score': 6.14}, {'connected_gene': 'RCAN2', 'score': 5.35}, {'connected_gene': 'SLC25A27', 'score': 4.72}, {'connected_gene': 'LOC101926898', 'score': 0.77}, {'connected_gene': 'RPL36P10', 'score': 0.25}]
chr6	GH06I046921	46921801	46922000	1.01	[{'connected_gene': 'ADGRF5', 'score': 561.82}, {'connected_gene': 'SLC25A27', 'score': 4.51}, {'connected_gene': 'LOC105375080', 'score': 0.44}, {'connected_gene': 'LOC101926962', 'score': 0.37}]
chr6	GH06I046908	46908264	46909391	0.2	[{'connected_gene': 'ADGRF5', 'score': 10.43}, {'connected_gene': 'SLC25A27', 'score': 4.63}, {'connected_gene': 'LOC101926962', 'score': 0.44}, {'connected_gene': 'LOC105375080', 'score': 0.34}]
chr6	GH06I046932	46932314	46934340	0.71	[{'connected_gene': 'LOC105375080', 'score': 550.77}, {'connected_gene': 'ADGRF5', 'score': 12.27}, {'connected_gene': 'LOC101926962', 'score': 11.38}, {'connected_gene': 'SLC25A27', 'score': 5.73}, {'connected_gene': 'TDRD6', 'score': 5.31}]
chr6	GH06I046322	46322979	46324151	0.67	[{'connected_gene': 'RCAN2', 'score': 7.23}, {'connected_gene': 'SLC25A27', 'score': 3.17}, {'connected_gene': 'ENPP4', 'score': 2.65}, {'connected_gene': 'ENPP5', 'score': 1.55}, {'connected_gene': 'CLIC5', 'score': 1.28}, {'connected_gene': 'LOC101926915', 'score': 0.25}, {'connected_gene': 'RPL36P10', 'score': 0.14}]
chr6	GH06I046512	46512161	46512690	0.2	[{'connected_gene': 'RCAN2', 'score': 17.46}, {'connected_gene': 'LOC101926898', 'score': 12.44}, {'connected_gene': 'SLC25A27', 'score': 8.34}, {'connected_gene': 'CYP39A1', 'score': 0.11}]
chr6	GH06I046518	46518163	46518769	0.2	[{'connected_gene': 'RCAN2', 'score': 17.0}, {'connected_gene': 'LOC101926898', 'score': 11.16}, {'connected_gene': 'SLC25A27', 'score': 4.62}, {'connected_gene': 'CYP39A1', 'score': 0.12}]
chr6	GH06I046900	46900863	46904465	0.54	[{'connected_gene': 'LOC101926962', 'score': 550.77}, {'connected_gene': 'ADGRF5', 'score': 10.7}, {'connected_gene': 'MEP1A', 'score': 9.73}, {'connected_gene': 'SLC25A27', 'score': 6.22}, {'connected_gene': 'GC06P046865', 'score': 0.28}]