PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000241014	[[45907201, 45907472], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45928016]]	[[45907371, 45907472], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45927272]]
ENST00000395629	[[45918100, 45918501], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45928016]]	[[45918430, 45918501], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45927272]]
ENST00000497090	[[45923483, 45923612], [45923922, 45924294]]	None
NM_005456	[[45907046, 45907472], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45928016]]	[[45907371, 45907472], [45919635, 45919741], [45921688, 45922003], [45923530, 45923612], [45923922, 45924735], [45924915, 45924991], [45925539, 45925712], [45926005, 45926115], [45926268, 45926385], [45926521, 45926592], [45926701, 45926800], [45927199, 45927272]]

Promoter

Chrom	Start	End	Description
chr11	45907143	45907152	CAGE_peak_13_at_MAPK8IP1_5end
chr11	45907154	45907165	CAGE_peak_6_at_MAPK8IP1_5end
chr11	45907177	45907233	CAGE_peak_2_at_MAPK8IP1_5end
chr11	45907236	45907257	CAGE_peak_3_at_MAPK8IP1_5end
chr11	45907316	45907323	CAGE_peak_16_at_MAPK8IP1_5end
chr11	45907328	45907337	CAGE_peak_7_at_MAPK8IP1_5end
chr11	45907351	45907360	CAGE_peak_12_at_MAPK8IP1_5end
chr11	45918092	45918107	CAGE_peak_10_at_MAPK8IP1_5end
chr11	45918158	45918189	CAGE_peak_8_at_MAPK8IP1_5end
chr11	45921467	45921491	CAGE_peak_4_at_MAPK8IP1_5end
chr11	45921498	45921525	CAGE_peak_5_at_MAPK8IP1_5end
chr11	45921544	45921554	CAGE_peak_9_at_MAPK8IP1_5end
chr11	45921651	45921708	CAGE_peak_1_at_MAPK8IP1_5end
chr11	45923497	45923522	CAGE_peak_11_at_MAPK8IP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I045875	45875057	45877516	0.2	[{'connected_gene': 'MAPK8IP1', 'score': 16.35}, {'connected_gene': 'DKFZp779M0652', 'score': 6.4}, {'connected_gene': 'CRY2', 'score': 0.31}]
chr11	GH11I045861	45861618	45862451	0.38	[{'connected_gene': 'MAPK8IP1', 'score': 17.45}, {'connected_gene': 'ENSG00000255498', 'score': 11.42}, {'connected_gene': 'C11orf94', 'score': 11.4}, {'connected_gene': 'LARGE2', 'score': 11.38}, {'connected_gene': 'PEX16', 'score': 11.38}, {'connected_gene': 'SLC35C1', 'score': 7.57}, {'connected_gene': 'CRY2', 'score': 0.39}]
chr11	GH11I045854	45854992	45861211	1.14	[{'connected_gene': 'MAPK8IP1', 'score': 29.27}, {'connected_gene': 'ENSG00000255498', 'score': 11.57}, {'connected_gene': 'C11orf94', 'score': 11.57}, {'connected_gene': 'LARGE2', 'score': 11.54}, {'connected_gene': 'PEX16', 'score': 11.54}, {'connected_gene': 'DKFZp779M0652', 'score': 11.47}, {'connected_gene': 'SLC35C1', 'score': 7.83}, {'connected_gene': 'CRY2', 'score': 0.39}]
chr11	GH11I045868	45868892	45869957	0.2	[{'connected_gene': 'MAPK8IP1', 'score': 15.68}, {'connected_gene': 'CRY2', 'score': 11.78}, {'connected_gene': 'SLC35C1', 'score': 8.09}]
chr11	GH11I045872	45872059	45873781	1.03	[{'connected_gene': 'MAPK8IP1', 'score': 19.03}, {'connected_gene': 'CRY2', 'score': 12.18}, {'connected_gene': 'SLC35C1', 'score': 5.03}]
chr11	GH11I045821	45821683	45824983	0.86	[{'connected_gene': 'MAPK8IP1', 'score': 15.89}, {'connected_gene': 'CRY2', 'score': 11.72}, {'connected_gene': 'DKFZp779M0652', 'score': 7.1}, {'connected_gene': 'ENSG00000255447', 'score': 0.39}]
chr11	GH11I045842	45842750	45844319	1.36	[{'connected_gene': 'MAPK8IP1', 'score': 17.62}, {'connected_gene': 'CRY2', 'score': 0.77}, {'connected_gene': 'ENSG00000255447', 'score': 0.29}]
chr11	GH11I045851	45851610	45853059	1.09	[{'connected_gene': 'MAPK8IP1', 'score': 29.26}, {'connected_gene': 'CRY2', 'score': 0.44}]
chr11	GH11I045885	45885201	45886459	1.84	[{'connected_gene': 'MAPK8IP1', 'score': 550.77}, {'connected_gene': 'ENSG00000255498', 'score': 0.34}]
chr11	GH11I046246	46246573	46251418	1.63	[{'connected_gene': 'CREB3L1', 'score': 14.47}, {'connected_gene': 'LINC02489', 'score': 12.52}, {'connected_gene': 'LARGE2', 'score': 6.75}, {'connected_gene': 'MAPK8IP1', 'score': 4.3}, {'connected_gene': 'GC11P046245', 'score': 0.77}]
chr11	GH11I045498	45498436	45498853	0.22	[{'connected_gene': 'CHST1', 'score': 10.2}, {'connected_gene': 'LOC101928812', 'score': 4.74}, {'connected_gene': 'MAPK8IP1', 'score': 1.38}, {'connected_gene': 'ENSG00000255041', 'score': 0.37}, {'connected_gene': 'LOC105376654', 'score': 0.26}, {'connected_gene': 'ENSG00000254651', 'score': 0.15}]
chr11	GH11I045895	45895757	45897671	0.87	[{'connected_gene': 'SLC35C1', 'score': 5.58}, {'connected_gene': 'ENSG00000255498', 'score': 0.44}, {'connected_gene': 'MAPK8IP1', 'score': 0.39}]
chr11	GH11I046699	46699600	46702201	2.32	[{'connected_gene': 'ZNF408', 'score': 585.02}, {'connected_gene': 'ARHGAP1', 'score': 564.25}, {'connected_gene': 'ENSG00000270060', 'score': 38.0}, {'connected_gene': 'AMBRA1', 'score': 34.74}, {'connected_gene': 'DDB2', 'score': 29.45}, {'connected_gene': 'CELF1', 'score': 21.25}, {'connected_gene': 'KBTBD4', 'score': 19.97}, {'connected_gene': 'ARFGAP2', 'score': 19.38}, {'connected_gene': 'C1QTNF4', 'score': 12.92}, {'connected_gene': 'C11orf49', 'score': 10.92}, {'connected_gene': 'MAPK8IP1', 'score': 10.34}, {'connected_gene': 'PACSIN3', 'score': 9.43}, {'connected_gene': 'MDK', 'score': 6.24}, {'connected_gene': 'LRP4', 'score': 5.84}, {'connected_gene': 'ATG13', 'score': 5.41}, {'connected_gene': 'F2', 'score': 0.37}]
chr11	GH11I045846	45846163	45849359	2.26	[{'connected_gene': 'CRY2', 'score': 550.77}, {'connected_gene': 'MAPK8IP1', 'score': 17.41}, {'connected_gene': 'SLC35C1', 'score': 5.86}]
chr11	GH11I044976	44976293	44981685	1.53	[{'connected_gene': 'LOC101928812', 'score': 21.41}, {'connected_gene': 'EXT2', 'score': 11.58}, {'connected_gene': 'MAPK8IP1', 'score': 10.34}, {'connected_gene': 'SYT13', 'score': 1.59}, {'connected_gene': 'TSPAN18', 'score': 1.24}, {'connected_gene': 'GC11P044981', 'score': 0.77}, {'connected_gene': 'LOC221122', 'score': 0.44}]
chr11	GH11I045898	45898799	45901474	1.6	[{'connected_gene': 'RPS10P19', 'score': 13.13}, {'connected_gene': 'MAPK8IP1', 'score': 3.46}, {'connected_gene': 'DGKZ', 'score': 2.2}, {'connected_gene': 'ENSG00000255498', 'score': 0.44}]
chr11	GH11I045904	45904321	45905257	0.96	[{'connected_gene': 'ENSG00000255498', 'score': 550.77}, {'connected_gene': 'MAPK8IP1', 'score': 0.37}]
chr11	GH11I045662	45662601	45663968	1.05	[{'connected_gene': 'PIR58767', 'score': 550.77}, {'connected_gene': 'CHST1', 'score': 9.44}, {'connected_gene': 'LARGE2', 'score': 4.54}, {'connected_gene': 'MAPK8IP1', 'score': 2.64}, {'connected_gene': 'CRY2', 'score': 1.69}, {'connected_gene': 'SYT13', 'score': 1.63}, {'connected_gene': 'GC11M045649', 'score': 0.77}, {'connected_gene': 'PIRC51', 'score': 0.77}]
chr11	GH11I046241	46241106	46245001	1.82	[{'connected_gene': 'GC11P046245', 'score': 550.77}, {'connected_gene': 'ENSG00000270060', 'score': 62.82}, {'connected_gene': 'DDB2', 'score': 51.43}, {'connected_gene': 'ZNF408', 'score': 41.17}, {'connected_gene': 'RPS10P19', 'score': 31.29}, {'connected_gene': 'AMBRA1', 'score': 29.42}, {'connected_gene': 'LOC101928812', 'score': 29.05}, {'connected_gene': 'MDK', 'score': 20.97}, {'connected_gene': 'CREB3L1', 'score': 12.3}, {'connected_gene': 'LINC02489', 'score': 12.3}, {'connected_gene': 'MAPK8IP1', 'score': 10.88}, {'connected_gene': 'ARFGAP2', 'score': 10.32}, {'connected_gene': 'LRP4-AS1', 'score': 9.76}, {'connected_gene': 'ATG13', 'score': 4.91}, {'connected_gene': 'SLC35C1', 'score': 4.35}, {'connected_gene': 'LRP4', 'score': 3.66}, {'connected_gene': 'ENSG00000254639', 'score': 0.77}]
chr11	GH11I045905	45905710	45908581	1.19	[{'connected_gene': 'ENSG00000255498', 'score': 550.77}, {'connected_gene': 'C11orf94', 'score': 550.77}, {'connected_gene': 'SLC35C1', 'score': 4.3}, {'connected_gene': 'MAPK8IP1', 'score': 0.34}]
chr11	GH11I045879	45879600	45882667	1.11	[{'connected_gene': 'ENSG00000255498', 'score': 12.99}, {'connected_gene': 'C11orf94', 'score': 12.99}, {'connected_gene': 'LARGE2', 'score': 12.95}, {'connected_gene': 'PEX16', 'score': 12.95}, {'connected_gene': 'MAPK8IP1', 'score': 10.52}, {'connected_gene': 'DKFZp779M0652', 'score': 6.39}, {'connected_gene': 'CRY2', 'score': 0.29}]
chr11	GH11I045865	45865616	45866813	0.2	[{'connected_gene': 'ENSG00000255498', 'score': 11.42}, {'connected_gene': 'C11orf94', 'score': 11.42}, {'connected_gene': 'LARGE2', 'score': 11.39}, {'connected_gene': 'PEX16', 'score': 11.39}, {'connected_gene': 'DKFZp779M0652', 'score': 7.49}, {'connected_gene': 'CRY2', 'score': 0.37}, {'connected_gene': 'MAPK8IP1', 'score': 0.37}]
chr11	GH11I045862	45862904	45863978	0.43	[{'connected_gene': 'ENSG00000255498', 'score': 11.42}, {'connected_gene': 'C11orf94', 'score': 11.42}, {'connected_gene': 'LARGE2', 'score': 11.38}, {'connected_gene': 'PEX16', 'score': 11.38}, {'connected_gene': 'CRY2', 'score': 0.37}, {'connected_gene': 'MAPK8IP1', 'score': 0.34}]
chr11	GH11I045524	45524387	45528794	0.6	[{'connected_gene': 'GC11M045526', 'score': 550.77}, {'connected_gene': 'LOC105376654', 'score': 6.9}, {'connected_gene': 'MAPK8IP1', 'score': 5.86}, {'connected_gene': 'CHST1', 'score': 5.61}, {'connected_gene': 'HMGN2P37', 'score': 0.39}]