PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368130	[[159032273, 159032508], [159033275, 159033464], [159035699, 159036119], [159038357, 159038491], [159043027, 159043309], [159046422, 159046691]]	[[159032481, 159032508], [159033275, 159033464], [159035699, 159036119], [159038357, 159038491], [159043027, 159043289]]
ENST00000481829	[[159033321, 159033464], [159035699, 159035784], [159036001, 159036119], [159038357, 159038491], [159043027, 159043055]]	None
ENST00000368129	[[159033368, 159033464], [159035699, 159036119], [159110220, 159110298]]	[[159033368, 159033464], [159035699, 159036104]]
ENST00000411768	[[159036105, 159036119], [159038357, 159038491], [159043027, 159043309], [159092028, 159092167], [159093309, 159093371], [159102032, 159102146], [159116799, 159116886]]	None
NM_004833	[[159032274, 159032508], [159033275, 159033464], [159035699, 159036119], [159038357, 159038491], [159043027, 159043309], [159046422, 159046647]]	[[159032481, 159032508], [159033275, 159033464], [159035699, 159036119], [159038357, 159038491], [159043027, 159043289]]

Promoter

Chrom	Start	End	Description
chr1	159046480	159046489	CAGE_peak_3_at_AIM2_5end
chr1	159046532	159046595	CAGE_peak_1_at_AIM2_5end
chr1	159046617	159046630	CAGE_peak_2_at_AIM2_5end
chr1	159116850	159116858	CAGE_peak_10_at_AIM2_5end
chr1	159116897	159116903	CAGE_peak_12_at_AIM2_5end
chr1	159116916	159116923	CAGE_peak_13_at_AIM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I159160	159160931	159162079	0.96	[{'connected_gene': 'AIM2', 'score': 5.03}, {'connected_gene': 'CADM3', 'score': 0.39}]
chr1	GH01I159031	159031940	159033928	0.2	[{'connected_gene': 'AIM2', 'score': 6.06}, {'connected_gene': 'ACKR1', 'score': 5.64}, {'connected_gene': 'GC01M159011', 'score': 0.37}, {'connected_gene': 'LOC105371461', 'score': 0.34}, {'connected_gene': 'IFI16', 'score': 0.29}]
chr1	GH01I159046	159046567	159049886	0.2	[{'connected_gene': 'AIM2', 'score': 8.21}, {'connected_gene': 'LOC105371461', 'score': 0.44}, {'connected_gene': 'GC01M159011', 'score': 0.29}, {'connected_gene': 'IFI16', 'score': 0.25}]
chr1	GH01I159050	159050196	159051735	0.2	[{'connected_gene': 'AIM2', 'score': 6.79}, {'connected_gene': 'LOC105371461', 'score': 0.44}, {'connected_gene': 'GC01M159011', 'score': 0.28}, {'connected_gene': 'IFI16', 'score': 0.23}]
chr1	GH01I159042	159042279	159045751	0.2	[{'connected_gene': 'AIM2', 'score': 8.71}, {'connected_gene': 'LOC105371461', 'score': 0.39}, {'connected_gene': 'GC01M159011', 'score': 0.31}, {'connected_gene': 'IFI16', 'score': 0.26}]
chr1	GH01I159078	159078740	159080523	0.52	[{'connected_gene': 'AIM2', 'score': 8.04}, {'connected_gene': 'RAD1P2', 'score': 0.77}, {'connected_gene': 'LOC105371461', 'score': 0.34}]
chr1	GH01I159075	159075705	159078434	1.89	[{'connected_gene': 'AIM2', 'score': 558.02}, {'connected_gene': 'RAD1P2', 'score': 0.77}, {'connected_gene': 'LOC105371461', 'score': 0.37}]
chr1	GH01I159094	159094691	159097127	0.2	[{'connected_gene': 'AIM2', 'score': 8.02}, {'connected_gene': 'RAD1P2', 'score': 0.39}, {'connected_gene': 'GC01M159143', 'score': 0.25}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.25}]
chr1	GH01I159054	159054014	159056205	0.63	[{'connected_gene': 'OR6K2', 'score': 9.1}, {'connected_gene': 'AIM2', 'score': 7.2}, {'connected_gene': 'LOC105371461', 'score': 0.77}, {'connected_gene': 'GC01M159011', 'score': 0.26}, {'connected_gene': 'IFI16', 'score': 0.22}]
chr1	GH01I159067	159067081	159070204	1.23	[{'connected_gene': 'OR6K2', 'score': 9.81}, {'connected_gene': 'AIM2', 'score': 6.42}, {'connected_gene': 'LOC105371461', 'score': 0.39}, {'connected_gene': 'RAD1P2', 'score': 0.39}]
chr1	GH01I159039	159039194	159041487	0.63	[{'connected_gene': 'OR6N2', 'score': 9.39}, {'connected_gene': 'AIM2', 'score': 7.27}, {'connected_gene': 'LOC105371461', 'score': 0.37}, {'connected_gene': 'GC01M159011', 'score': 0.31}, {'connected_gene': 'IFI16', 'score': 0.26}]
chr1	GH01I159211	159211201	159211600	0.67	[{'connected_gene': 'CADM3', 'score': 11.29}, {'connected_gene': 'AIM2', 'score': 11.08}, {'connected_gene': 'OR10J2P', 'score': 9.78}, {'connected_gene': 'FCER1A', 'score': 9.77}, {'connected_gene': 'OR10J3', 'score': 9.19}, {'connected_gene': 'DUSP23', 'score': 9.15}, {'connected_gene': 'ACKR1', 'score': 8.02}, {'connected_gene': 'CADM3-AS1', 'score': 0.77}, {'connected_gene': 'MPTX1', 'score': 0.2}]
chr1	GH01I159171	159171311	159171460	0.46	[{'connected_gene': 'CADM3', 'score': 550.77}, {'connected_gene': 'AIM2', 'score': 0.34}]
chr1	GH01I159174	159171491	159171640	0.93	[{'connected_gene': 'CADM3', 'score': 550.77}, {'connected_gene': 'AIM2', 'score': 0.34}]
chr1	GH01I159172	159172567	159173600	0.93	[{'connected_gene': 'CADM3', 'score': 556.75}, {'connected_gene': 'ACKR1', 'score': 17.61}, {'connected_gene': 'CADM3-AS1', 'score': 11.16}, {'connected_gene': 'AIM2', 'score': 11.15}, {'connected_gene': 'ENSG00000212161', 'score': 9.16}, {'connected_gene': 'OR10J3', 'score': 9.01}, {'connected_gene': 'OR6N1', 'score': 3.76}, {'connected_gene': 'OR6K3', 'score': 3.7}, {'connected_gene': 'FCER1A', 'score': 3.43}, {'connected_gene': 'OR6N2', 'score': 2.9}, {'connected_gene': 'OR10J5', 'score': 1.24}, {'connected_gene': 'RNA5SP60', 'score': 0.44}]
chr1	GH01I159084	159084401	159085290	0.79	[{'connected_gene': 'MNDA', 'score': 24.13}, {'connected_gene': 'AIM2', 'score': 8.13}, {'connected_gene': 'IFI16', 'score': 2.69}, {'connected_gene': 'RAD1P2', 'score': 0.77}, {'connected_gene': 'GC01M159143', 'score': 0.22}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.22}]
chr1	GH01I158998	158998771	159001259	1.73	[{'connected_gene': 'IFI16', 'score': 564.71}, {'connected_gene': 'AIM2', 'score': 1.45}, {'connected_gene': 'GC01M159011', 'score': 0.39}]
chr1	GH01I159004	159004768	159017376	2.67	[{'connected_gene': 'IFI16', 'score': 569.21}, {'connected_gene': 'OR6N2', 'score': 10.04}, {'connected_gene': 'CADM3-AS1', 'score': 9.97}, {'connected_gene': 'RAD1P2', 'score': 9.97}, {'connected_gene': 'ACKR1', 'score': 6.26}, {'connected_gene': 'AIM2', 'score': 2.44}, {'connected_gene': 'PYHIN1', 'score': 1.42}, {'connected_gene': 'GC01M159011', 'score': 0.77}]
chr1	GH01I159751	159751038	159754188	0.98	[{'connected_gene': 'CRP', 'score': 10.89}, {'connected_gene': 'FCRL6', 'score': 10.43}, {'connected_gene': 'DUSP23', 'score': 10.11}, {'connected_gene': 'ENSG00000212161', 'score': 9.86}, {'connected_gene': 'AIM2', 'score': 4.54}, {'connected_gene': 'RPL27P2', 'score': 0.44}]
chr1	GH01I159090	159089911	159093035	1.06	[{'connected_gene': 'RAD1P2', 'score': 12.11}, {'connected_gene': 'SLAMF8', 'score': 11.14}, {'connected_gene': 'SNHG28', 'score': 10.54}, {'connected_gene': 'AIM2', 'score': 6.36}, {'connected_gene': 'GC01M159143', 'score': 0.23}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.23}]
chr1	GH01I159072	159072111	159072260	0.8	[{'connected_gene': 'RAD1P2', 'score': 0.44}, {'connected_gene': 'LOC105371461', 'score': 0.39}, {'connected_gene': 'AIM2', 'score': 0.19}]
chr1	GH01I159087	159087908	159089194	1.02	[{'connected_gene': 'RAD1P2', 'score': 0.44}, {'connected_gene': 'GC01M159143', 'score': 0.23}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.23}, {'connected_gene': 'AIM2', 'score': 0.22}]
chr1	GH01I159103	159103165	159104344	0.2	[{'connected_gene': 'RAD1P2', 'score': 0.34}, {'connected_gene': 'GC01M159143', 'score': 0.28}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.28}, {'connected_gene': 'AIM2', 'score': 0.26}]
chr1	GH01I159089	159089331	159089480	0.72	[{'connected_gene': 'RAD1P2', 'score': 0.44}, {'connected_gene': 'GC01M159143', 'score': 0.23}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.23}, {'connected_gene': 'AIM2', 'score': 0.22}]
chr1	GH01I159118	159118398	159118580	0.22	[{'connected_gene': 'GC01M159143', 'score': 0.34}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.34}, {'connected_gene': 'AIM2', 'score': 0.31}, {'connected_gene': 'RAD1P2', 'score': 0.28}]
chr1	GH01I159113	159113689	159114462	0.2	[{'connected_gene': 'GC01M159143', 'score': 0.31}, {'connected_gene': 'TRR-TCT4-1', 'score': 0.31}, {'connected_gene': 'AIM2', 'score': 0.29}, {'connected_gene': 'RAD1P2', 'score': 0.29}]
chr1	GH01I159141	159141577	159142400	0.84	[{'connected_gene': 'GC01M159143', 'score': 550.77}, {'connected_gene': 'TRR-TCT4-1', 'score': 550.77}, {'connected_gene': 'OR6K3', 'score': 18.3}, {'connected_gene': 'OR6N1', 'score': 15.86}, {'connected_gene': 'FCER1A', 'score': 14.8}, {'connected_gene': 'CADM3', 'score': 12.17}, {'connected_gene': 'ACKR1', 'score': 11.31}, {'connected_gene': 'CADM3-AS1', 'score': 11.3}, {'connected_gene': 'OR6N2', 'score': 10.15}, {'connected_gene': 'OR10J5', 'score': 7.95}, {'connected_gene': 'AIM2', 'score': 6.7}, {'connected_gene': 'OR10J1', 'score': 3.04}]