PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000397292	[[26904080, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947461]]	[[26905508, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947043]]
ENST00000517642	[[26905880, 26906074], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923231]]	[[26905880, 26906074], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923231]]
ENST00000487173	[[26907607, 26907996], [26910335, 26910437], [26913876, 26913945], [26919307, 26919372]]	[[26907823, 26907996], [26910335, 26910437], [26913876, 26913945], [26919307, 26919372]]
ENST00000520884	[[26907800, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947231]]	[[26907823, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947043]]
ENST00000520641	[[26916453, 26916703], [26917094, 26917163], [26919307, 26919459]]	None
ENST00000521968	[[26919190, 26919527], [26920224, 26920344]]	None
ENST00000523212	[[26925890, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935195], [26946894, 26946981]]	[[26925890, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935195], [26946894, 26946981]]
NM_001031689	[[26903367, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947468]]	[[26905508, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26917094, 26917163], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947043]]
NM_001321546	[[26903447, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947471]]	[[26905508, 26906074], [26907831, 26907996], [26910335, 26910437], [26913876, 26913945], [26919307, 26919527], [26920224, 26920382], [26923175, 26923345], [26925822, 26925958], [26926390, 26926558], [26928097, 26928218], [26928305, 26928406], [26935010, 26935204], [26946894, 26947043]]

Promoter

Chrom	Start	End	Description
chr9	26947101	26947112	CAGE_peak_7_at_PLAA_5end
chr9	26947129	26947212	CAGE_peak_1_at_PLAA_5end
chr9	26947220	26947270	CAGE_peak_2_at_PLAA_5end
chr9	26947285	26947296	CAGE_peak_6_at_PLAA_5end
chr9	26947453	26947473	CAGE_peak_3_at_PLAA_5end
chr9	26947482	26947493	CAGE_peak_4_at_PLAA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I027433	27433223	27435008	0.76	[{'connected_gene': 'PLAA', 'score': 4.92}, {'connected_gene': 'ENSG00000237734', 'score': 0.26}, {'connected_gene': 'LOC105376001', 'score': 0.21}, {'connected_gene': 'MOB3B', 'score': 0.15}]
chr9	GH09I026945	26945346	26948319	2.29	[{'connected_gene': 'IFT74', 'score': 565.34}, {'connected_gene': 'PLAA', 'score': 552.26}, {'connected_gene': 'CAAP1', 'score': 27.44}, {'connected_gene': 'RN7SL100P', 'score': 0.23}]
chr9	GH09I027351	27351130	27352775	1.32	[{'connected_gene': 'IFT74', 'score': 23.72}, {'connected_gene': 'MOB3B', 'score': 11.44}, {'connected_gene': 'IFNK', 'score': 10.66}, {'connected_gene': 'C9orf72', 'score': 10.5}, {'connected_gene': 'PLAA', 'score': 1.23}, {'connected_gene': 'GC09M027375', 'score': 0.31}, {'connected_gene': 'EQTN', 'score': 0.23}]
chr9	GH09I026974	26974695	26977659	0.79	[{'connected_gene': 'IFT74', 'score': 37.5}, {'connected_gene': 'LRRC19', 'score': 20.63}, {'connected_gene': 'CAAP1', 'score': 14.99}, {'connected_gene': 'PLAA', 'score': 10.95}, {'connected_gene': 'IFT74-AS1', 'score': 0.37}]
chr9	GH09I026953	26953839	26957699	2.29	[{'connected_gene': 'IFT74', 'score': 585.17}, {'connected_gene': 'IFT74-AS1', 'score': 550.77}, {'connected_gene': 'CAAP1', 'score': 27.07}, {'connected_gene': 'LRRC19', 'score': 18.85}, {'connected_gene': 'PLAA', 'score': 0.44}]
chr9	GH09I026949	26949469	26950558	0.69	[{'connected_gene': 'CAAP1', 'score': 27.6}, {'connected_gene': 'IFT74', 'score': 26.72}, {'connected_gene': 'LRRC19', 'score': 8.75}, {'connected_gene': 'PLAA', 'score': 0.77}, {'connected_gene': 'IFT74-AS1', 'score': 0.44}]
chr9	GH09I027365	27365018	27373527	1.48	[{'connected_gene': 'MOB3B', 'score': 19.35}, {'connected_gene': 'IFT74', 'score': 15.44}, {'connected_gene': 'ENSG00000237734', 'score': 11.35}, {'connected_gene': 'EQTN', 'score': 10.29}, {'connected_gene': 'IFNK', 'score': 9.85}, {'connected_gene': 'C9orf72', 'score': 7.34}, {'connected_gene': 'PLAA', 'score': 1.22}, {'connected_gene': 'GC09M027375', 'score': 0.44}]
chr9	GH09I026889	26889997	26893840	2.08	[{'connected_gene': 'GC09P026892', 'score': 550.77}, {'connected_gene': 'CAAP1', 'score': 550.77}, {'connected_gene': 'IFT74', 'score': 45.52}, {'connected_gene': 'LRRC19', 'score': 19.28}, {'connected_gene': 'PLAA', 'score': 11.48}, {'connected_gene': 'ENSG00000232466', 'score': 0.39}]
chr9	GH09I026894	26894103	26894252	0.2	[{'connected_gene': 'GC09P026892', 'score': 550.77}, {'connected_gene': 'RN7SL100P', 'score': 550.77}, {'connected_gene': 'CAAP1', 'score': 550.77}, {'connected_gene': 'PLAA', 'score': 11.2}, {'connected_gene': 'IFT74', 'score': 11.2}, {'connected_gene': 'IFT74-AS1', 'score': 10.55}]