PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394877	[[100467865, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480507], [100485069, 100485174]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
ENST00000273962	[[100467883, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480507], [100484524, 100484825]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
ENST00000394876	[[100469769, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480518], [100485069, 100485189]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
ENST00000455368	[[100474969, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480507], [100484714, 100484887]]	[[100474969, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
ENST00000514547	[[100474987, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480518], [100484714, 100484880]]	[[100474987, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
ENST00000515831	[[100477302, 100477377], [100478501, 100478687]]	None
ENST00000507394	[[100478845, 100479368], [100480310, 100480518], [100484714, 100484829]]	None
NM_152292	[[100467863, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480507], [100484524, 100484825]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
NM_001134665	[[100467863, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480518], [100485069, 100485214]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]
NM_001134666	[[100467863, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480507], [100485069, 100485214]]	[[100470244, 100470513], [100472041, 100472147], [100474941, 100475091], [100477302, 100477377], [100478501, 100478573], [100479205, 100479368], [100480310, 100480495]]

Promoter

Chrom	Start	End	Description
chr4	100484667	100484671	CAGE_peak_8_at_RG9MTD2_5end
chr4	100484757	100484772	CAGE_peak_4_at_RG9MTD2_5end
chr4	100484838	100484901	CAGE_peak_1_at_RG9MTD2_5end
chr4	100485143	100485182	CAGE_peak_2_at_RG9MTD2_5end
chr4	100485183	100485202	CAGE_peak_3_at_RG9MTD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I100348	100348082	100349563	1.07	[{'connected_gene': 'TRMT10A', 'score': 4.88}, {'connected_gene': 'LAMTOR3', 'score': 3.76}, {'connected_gene': 'GC04M100396', 'score': 0.25}, {'connected_gene': 'GC04P100245', 'score': 0.15}, {'connected_gene': 'PIR53160', 'score': 0.15}]
chr4	GH04I099825	99824306	99824333	0.4	[{'connected_gene': 'TRMT10A', 'score': 11.03}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'LOC285556', 'score': 0.77}, {'connected_gene': 'DAPP1', 'score': 0.44}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099610	99610674	99611400	0.38	[{'connected_gene': 'TRMT10A', 'score': 23.55}, {'connected_gene': 'MTTP', 'score': 20.76}, {'connected_gene': 'LOC285556', 'score': 11.28}, {'connected_gene': 'ADH1B', 'score': 4.09}, {'connected_gene': 'ENSG00000248676', 'score': 0.39}]
chr4	GH04I099686	99686580	99687870	0.2	[{'connected_gene': 'TRMT10A', 'score': 16.2}, {'connected_gene': 'MTTP', 'score': 10.68}, {'connected_gene': 'ENSG00000248676', 'score': 0.21}, {'connected_gene': 'DAPP1', 'score': 0.13}, {'connected_gene': 'LOC285556', 'score': 0.12}]
chr4	GH04I099808	99808384	99808533	0.63	[{'connected_gene': 'TRMT10A', 'score': 11.43}, {'connected_gene': 'MTTP', 'score': 11.43}, {'connected_gene': 'DAPP1', 'score': 0.44}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099580	99580732	99581223	0.4	[{'connected_gene': 'TRMT10A', 'score': 13.27}, {'connected_gene': 'MTTP', 'score': 0.37}, {'connected_gene': 'ENSG00000248676', 'score': 0.26}]
chr4	GH04I099645	99645204	99645353	0.51	[{'connected_gene': 'TRMT10A', 'score': 5.73}, {'connected_gene': 'ENSG00000248676', 'score': 0.37}, {'connected_gene': 'LOC285556', 'score': 0.1}, {'connected_gene': 'DAPP1', 'score': 0.09}]
chr4	GH04I099642	99642442	99644196	0.69	[{'connected_gene': 'TRMT10A', 'score': 7.59}, {'connected_gene': 'ENSG00000248676', 'score': 0.37}, {'connected_gene': 'LOC285556', 'score': 0.1}, {'connected_gene': 'DAPP1', 'score': 0.09}]
chr4	GH04I099710	99710299	99712116	0.59	[{'connected_gene': 'TRMT10A', 'score': 5.66}, {'connected_gene': 'ENSG00000248676', 'score': 0.17}, {'connected_gene': 'DAPP1', 'score': 0.14}, {'connected_gene': 'LOC285556', 'score': 0.14}]
chr4	GH04I099657	99657884	99657993	0.69	[{'connected_gene': 'TRMT10A', 'score': 6.44}, {'connected_gene': 'ENSG00000248676', 'score': 0.29}, {'connected_gene': 'DAPP1', 'score': 0.1}, {'connected_gene': 'LOC285556', 'score': 0.1}]
chr4	GH04I099457	99457189	99460316	0.76	[{'connected_gene': 'TRMT10A', 'score': 4.46}, {'connected_gene': 'LOC100507053', 'score': 4.38}, {'connected_gene': 'ADH7', 'score': 0.34}, {'connected_gene': 'ENSG00000250300', 'score': 0.28}]
chr4	GH04I099829	99829998	99837548	0.46	[{'connected_gene': 'LAMTOR3', 'score': 10.57}, {'connected_gene': 'TRMT10A', 'score': 10.5}, {'connected_gene': 'MTTP', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.18}, {'connected_gene': 'DNAJB14', 'score': 7.22}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LOC285556', 'score': 0.39}]
chr4	GH04I099893	99893122	99895379	1.96	[{'connected_gene': 'LAMTOR3', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 23.39}, {'connected_gene': 'LOC256880', 'score': 12.13}, {'connected_gene': 'H2AFZ', 'score': 12.13}, {'connected_gene': 'MTTP', 'score': 9.98}, {'connected_gene': 'TRMT10A', 'score': 9.98}, {'connected_gene': 'DAPP1', 'score': 4.18}, {'connected_gene': 'ENSG00000279913', 'score': 0.23}]
chr4	GH04I099870	99870296	99872782	0.31	[{'connected_gene': 'LAMTOR3', 'score': 22.02}, {'connected_gene': 'DAPP1', 'score': 19.55}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'DNAJB14', 'score': 9.1}, {'connected_gene': 'ENSG00000279913', 'score': 0.31}]
chr4	GH04I099827	99827064	99828974	0.77	[{'connected_gene': 'DNAJB14', 'score': 10.68}, {'connected_gene': 'LOC256880', 'score': 10.68}, {'connected_gene': 'H2AFZ', 'score': 10.68}, {'connected_gene': 'MTTP', 'score': 10.28}, {'connected_gene': 'TRMT10A', 'score': 10.28}, {'connected_gene': 'LAMTOR3', 'score': 9.71}, {'connected_gene': 'DAPP1', 'score': 8.89}, {'connected_gene': 'LOC100507053', 'score': 5.45}, {'connected_gene': 'LOC285556', 'score': 0.44}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099539	99539292	99541131	0.2	[{'connected_gene': 'MTTP', 'score': 28.91}, {'connected_gene': 'TRMT10A', 'score': 11.78}, {'connected_gene': 'C4orf17', 'score': 10.77}, {'connected_gene': 'ADH1B', 'score': 4.1}]
chr4	GH04I099714	99714821	99717715	0.46	[{'connected_gene': 'MTTP', 'score': 18.55}, {'connected_gene': 'TRMT10A', 'score': 16.62}, {'connected_gene': 'ENSG00000248676', 'score': 0.16}, {'connected_gene': 'DAPP1', 'score': 0.15}, {'connected_gene': 'LOC285556', 'score': 0.14}]
chr4	GH04I099721	99721969	99724584	1.03	[{'connected_gene': 'MTTP', 'score': 14.24}, {'connected_gene': 'TRMT10A', 'score': 10.2}, {'connected_gene': 'DAPP1', 'score': 0.16}, {'connected_gene': 'ENSG00000248676', 'score': 0.15}, {'connected_gene': 'LOC285556', 'score': 0.15}]
chr4	GH04I099810	99810416	99810693	0.22	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099811	99811904	99812013	0.59	[{'connected_gene': 'MTTP', 'score': 10.88}, {'connected_gene': 'TRMT10A', 'score': 10.88}, {'connected_gene': 'LOC256880', 'score': 10.5}, {'connected_gene': 'H2AFZ', 'score': 10.5}, {'connected_gene': 'DNAJB14', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 0.77}, {'connected_gene': 'LOC285556', 'score': 0.39}, {'connected_gene': 'ENSG00000248676', 'score': 0.09}]
chr4	GH04I099571	99571429	99580447	1.58	[{'connected_gene': 'MTTP', 'score': 570.7}, {'connected_gene': 'TRMT10A', 'score': 8.18}, {'connected_gene': 'LOC100507053', 'score': 4.38}, {'connected_gene': 'ADH1B', 'score': 4.1}, {'connected_gene': 'ENSG00000248676', 'score': 0.25}]
chr4	GH04I099582	99582000	99588698	0.83	[{'connected_gene': 'MTTP', 'score': 17.47}, {'connected_gene': 'TRMT10A', 'score': 12.01}, {'connected_gene': 'LOC100507053', 'score': 4.38}, {'connected_gene': 'ADH1B', 'score': 4.1}, {'connected_gene': 'ENSG00000248676', 'score': 0.26}]
chr4	GH04I099562	99562319	99565734	2.07	[{'connected_gene': 'MTTP', 'score': 573.3}, {'connected_gene': 'TRMT10A', 'score': 563.67}]
chr4	GH04I099561	99561001	99561600	1.03	[{'connected_gene': 'MTTP', 'score': 17.9}, {'connected_gene': 'LOC100507053', 'score': 4.38}, {'connected_gene': 'TRMT10A', 'score': 0.77}, {'connected_gene': 'C4orf17', 'score': 0.23}]
chr4	GH04I099824	99824442	99826151	0.58	[{'connected_gene': 'H2AFZ', 'score': 11.29}, {'connected_gene': 'LOC256880', 'score': 11.28}, {'connected_gene': 'DNAJB14', 'score': 11.28}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'TRMT10A', 'score': 11.03}, {'connected_gene': 'LAMTOR3', 'score': 9.2}, {'connected_gene': 'DAPP1', 'score': 8.93}, {'connected_gene': 'LOC285556', 'score': 0.77}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099819	99819836	99823026	1.3	[{'connected_gene': 'LOC285556', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 17.2}, {'connected_gene': 'TRMT10A', 'score': 13.12}, {'connected_gene': 'DAPP1', 'score': 12.77}, {'connected_gene': 'H2AFZ', 'score': 12.4}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'LOC256880', 'score': 10.59}, {'connected_gene': 'LAMTOR3', 'score': 10.53}, {'connected_gene': 'DDIT4L', 'score': 2.39}]
chr4	GH04I099845	99845009	99848258	1.49	[{'connected_gene': 'DAPP1', 'score': 22.91}, {'connected_gene': 'TRMT10A', 'score': 12.23}, {'connected_gene': 'MTTP', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 10.0}, {'connected_gene': 'DNAJB14', 'score': 8.06}, {'connected_gene': 'ENSG00000279913', 'score': 0.77}]
chr4	GH04I099841	99841284	99841580	0.65	[{'connected_gene': 'DAPP1', 'score': 32.52}, {'connected_gene': 'TRMT10A', 'score': 11.75}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'LAMTOR3', 'score': 2.64}, {'connected_gene': 'ENSG00000279913', 'score': 0.77}, {'connected_gene': 'LOC285556', 'score': 0.37}]
chr4	GH04I099860	99860583	99860891	0.6	[{'connected_gene': 'DAPP1', 'score': 15.82}, {'connected_gene': 'TRMT10A', 'score': 12.8}, {'connected_gene': 'MTTP', 'score': 10.94}, {'connected_gene': 'LAMTOR3', 'score': 9.88}, {'connected_gene': 'ADH7', 'score': 5.31}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099814	99814898	99818958	2.23	[{'connected_gene': 'DAPP1', 'score': 564.34}, {'connected_gene': 'TRMT10A', 'score': 12.27}, {'connected_gene': 'MTTP', 'score': 10.72}, {'connected_gene': 'DNAJB14', 'score': 10.59}, {'connected_gene': 'LOC256880', 'score': 10.58}, {'connected_gene': 'H2AFZ', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 6.71}, {'connected_gene': 'LOC285556', 'score': 0.44}]
chr4	GH04I099838	99838291	99839489	0.2	[{'connected_gene': 'DAPP1', 'score': 11.65}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'LAMTOR3', 'score': 10.04}, {'connected_gene': 'DNAJB14', 'score': 9.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.44}, {'connected_gene': 'LOC285556', 'score': 0.37}]
chr4	GH04I099648	99648227	99656543	0.97	[{'connected_gene': 'ENSG00000248676', 'score': 10.73}, {'connected_gene': 'TRMT10A', 'score': 9.8}, {'connected_gene': 'MTTP', 'score': 6.98}, {'connected_gene': 'LOC285556', 'score': 0.1}, {'connected_gene': 'DAPP1', 'score': 0.1}]
chr4	GH04I099842	99842034	99843311	1.18	[{'connected_gene': 'ENSG00000279913', 'score': 550.77}, {'connected_gene': 'DAPP1', 'score': 11.68}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'DNAJB14', 'score': 9.29}, {'connected_gene': 'LOC285556', 'score': 0.34}]